BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10986.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317898 jgi|Araly1|317898|fgenesh1_pm.C_scaffold_3000914           937    0.0  


> Ahg317898 jgi|Araly1|317898|fgenesh1_pm.C_scaffold_3000914
Length=594

 Score =  937 bits (507),  Expect = 0.0
 Identities = 567/596 (95%), Gaps = 4/596 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGAGTGTTGTGGGAGAGATGTTTTGTAATCCGTACACGACGGAGCTGGTGGTGAGA  60
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAGTGTTGTGGGAGAAATGTTCTGTAATCCGTACACGACGGAGCTGGTGGTGAGA  60

Query  61   AGGCGGCGTGAGAGCCTGAAAAGGGAACGCTACGACGTTTTCGATCTTTCTAACAATCTC  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  61   AGGCGGCGTGAGAGCCTGAAAAGGGAACGCTACGACGTTTTCGATCTCTCTGACAATCTC  120

Query  121  ATCTTCACCGTGGACGGTGGCATTTGGAACATCCGCCGTAAACGTGTCCTCCGTGACGCC  180
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  ATCTTCACCGTGGAAGGTGGCATTTGGAACATCCGCCGAAAACGTGTCCTCCGTGACGCC  180

Query  181  GCCGGAATTCCTCTTCTCTCCATGCGTACTAAGGGACTAGTACCAATGCGATACAATTGG  240
             |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||
Sbjct  181  ACCGGAATTCCTCTTCTCTCCATGCGTACCAAGGGACTTGTAACAATGCGATACAAATGG  240

Query  241  GAAGTATACAAAGGAGATAGCACAGAATCTGATA-ATCTTCTTTTCTCAGCAAGGGAACC  299
            ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct  241  GAAGTATACAAAGGAGAAAGCACAGAATCTGA-AGATCTTCTTTTCTCAGCAAGGGAACC  299

Query  300  AAATCTATTATCCTTCAAAACATCACTTGATGTCACTTTACCGCCAGACCAATCTTCAAC  359
            ||||||||||||||| ||| ||||||||||||||||||||||||||  ||||  ||||||
Sbjct  300  AAATCTATTATCCTTTAAACCATCACTTGATGTCACTTTACCGCCACCCCAAAATTCAAC  359

Query  360  GGACATAAGTAGTGTCGAGCCAGATTTTCAAACATTTGGTCGTTATATCGGCTCTTCTTT  419
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GGACATAAGTAGTATCGCGCCAGATTTTCAAACATTTGGTCGTTATATCGGCTCTTCTTT  419

Query  420  CAAACTCTTCGAGCCAATTCACAATACTCTTCTTGCTGAGGTGGTTCATGATTTCACATG  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  420  CAAACTCTTCGAGCCAATTCACAATACTCTTCTTGCTGAGGTGGTTCATGATTTCTCATG  479

Query  480  GGGAGGAC-TCATAAAAGGGAGTTACAGCTTCAAAGTGAGAGTTAATCCATATGTGGATT  538
            |||||||| | |||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct  480  GGGAGGACCT-ATAAAAGGGAGTTACAGCTTCAAAGTGAGAGTGAATCCATATATCGATT  538

Query  539  TCGCATTTGTCGTGGCGTTACTTGTAATCACAGATGATACTTCCAATCTACGTTAG  594
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  TCGCATTTGTGGTGGCGTTACTTGTAATCACAGATGATACTTCCAATCTACGTTAG  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5