BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10990.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478445 jgi|Araly1|478445|fgenesh2_kg.3__1146__AT3G10990.1         340    5e-93


> Ahg478445 jgi|Araly1|478445|fgenesh2_kg.3__1146__AT3G10990.1
Length=549

 Score =  340 bits (184),  Expect = 5e-93
 Identities = 241/267 (90%), Gaps = 9/267 (3%)
 Strand=Plus/Plus

Query  267  AAG-TTTCGAGTTGCGGGTCCTAGAAGACGCTGAAAAACATGATTGGTCGAA-GCATGTA  324
            ||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||  ||||||
Sbjct  233  AAGATTTCGAGTTGCGGGTCCTAGAAGACGCTGGAAAACATGAATGGTC-AACACATGTA  291

Query  325  TACATGTTGCCTCCTCTGTGGAAGAATGTAGTTGGAGAAGAGACCAAGCTACGACTTCTT  384
            ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||  |||||
Sbjct  292  TACATGTTGCCTCCTTTGTGGAAGAATCTAGTTGGAGAAGAGACCAACCTACGGTTTCTT  351

Query  385  GGAATGGTTGGCAGTTGCACCAATGAAATTGTGTTTTCGTACAAGTACCCATCTACATTT  444
            || |   |||  ||  ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct  352  GG-A---TTGAAAG--GCACCAATGAAATTGTGTTGTCGTGCAAGTACCCATCTACATTT  405

Query  445  ATGCCTTCCTACGTCTTCTACTACAATATCGAGAGGAACACGATCATAAGACTTGAAATC  504
            |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||
Sbjct  406  ATGCCTTCCTACGTCTTCTACTACAACATCGAGAGAAACACGATCAGAAGACTTCAAATC  465

Query  505  CAAGGAATGGAAGAGCTTAACGGTAAG  531
            ||||||||||||||| |||||||||||
Sbjct  466  CAAGGAATGGAAGAGTTTAACGGTAAG  492


 Score =  326 bits (176),  Expect = 1e-88
 Identities = 216/236 (92%), Gaps = 0/236 (0%)
 Strand=Plus/Plus

Query  1    ATGATTGAATGTTGCAAACCCCATGTTCCTCGTGGTACTGAAATATGCATTAACAGTGTT  60
            |||||| |||| ||||||||||||||||||| ||||| |||||||||||| ||| |||||
Sbjct  1    ATGATTCAATGCTGCAAACCCCATGTTCCTCATGGTAGTGAAATATGCATCAACGGTGTT  60

Query  61   TTGTATTATACTGCCGTCGAAAAAGGGTCTTTAATGGTTACTATAGTAGTTTGCTTCGAT  120
            |||||||||||||| |||||||||| |||||||||||| ||||  ||||||||||| |||
Sbjct  61   TTGTATTATACTGCGGTCGAAAAAGAGTCTTTAATGGTAACTACGGTAGTTTGCTTTGAT  120

Query  121  ATTAGCTCGGAGAAGTTCAGCTTTATGAAAGTCATGGAAACTTTCGATAGAGATTTGCCT  180
            |||||||| || |||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct  121  ATTAGCTCTGAAAAGTTCAGCTTTATGAAAGTCACGGAAACTTTCAATAGAGATCTGCCT  180

Query  181  AGTTCAACAACTATGATAAACTACAATGGCAAATTAGGTTTGTTGATGACGGAAGA  236
            || ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  181  AGGTCAACAACTATGATAAACTACAATGGCAAATTAGGTTTGTTGATGGCTGAAGA  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5