BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11000.2
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478446 jgi|Araly1|478446|fgenesh2_kg.3__1147__AT3G11000.1 2379 0.0
> Ahg478446 jgi|Araly1|478446|fgenesh2_kg.3__1147__AT3G11000.1
Length=1923
Score = 2379 bits (1288), Expect = 0.0
Identities = 1451/1531 (95%), Gaps = 5/1531 (0%)
Strand=Plus/Plus
Query 632 GAAATATGTGTGTGAGGAATCTGAAGAAGGGAGATCTTTGTGGGGTTATATTTGGATGCA 691
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GAAATATGTGTGTGAGAAATCTGAAGAAGGGAGATCTTTGTGGGGTTATATTTGGATGCA 388
Query 692 AGTTCAGCACTATCAAAGAGTGCTATGCTAAGAATTTGTTTGGCTTACCAGCCCCGCACA 751
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 389 AGTTCAGCACTATCAAAGAGTGCTATGCTAAGAATTTGTTTGGTTTACCAGCCCCACACA 448
Query 752 TGGCTTATATCAAGAACATTGATCCTGGTTTGACGCTGTTCCTGTTCAACTACAGTGACA 811
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 449 TGGCTTATATCAAGAACATTGATCCCGGCTTGACGCTGTTCCTATTCAACTACAGTGACA 508
Query 812 GAACACTTCACGGCATCTTTGAAGCTGCTAGTGAAGGAAAACTGAACATTGATTCCAAAG 871
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GAACACTTCACGGCATATTTGAAGCTGCTAGTGAAGGAAAACTGAACATTGATTCCAAAG 568
Query 872 CTTGGTCTCCAAATGGGACAGATCCAAGTCCATATCCTGCTCAGGTAAAGGTACGAGTCC 931
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 569 CTTGGTCTCCAAATGGGACAGATCCAACTCCATATCCTGCTCAGGTAAAGGTACGAGTCC 628
Query 932 GAGTGCGGTGTGAGCCCTTGCCTGAAGAAAAGTTCAGCCCAGTAATTGT-TGAGAATTAC 990
||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||
Sbjct 629 GAGTGCGGTGTGAGCCCTTACCTGAAGAAAAGTTCAGCCCCGTAATT-TCTGAGAATTAC 687
Query 991 AATGACGACAAGATGTTTTGGTTTGAACTAGATCGAGGTCAGACAAACAAGCTGCTCCGT 1050
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 688 AAGGACGAAAAGATGTTTTGGTTTGAACTAGACCGAGGTCAGACAAACAAGCTGCTCCGT 747
Query 1051 TTGTTTAAACCATCCCCATCTGTTA-GG--CCACCAACGATATCCAGAGATGCTGTACCA 1107
|||||||||||||| |||||||| | || |||||| ||||||| |||||||||||||||
Sbjct 748 TTGTTTAAACCATCACCATCTGTAAGGGCACCACCATCGATATCAAGAGATGCTGTACCA 807
Query 1108 CCACCCAGAAAGCCTATTCCGGCATCTTCTCTTGCACAGATAGGTGACTCGGGAGCAACG 1167
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 808 CCACCCAGAAAGCCTATTCCGACATCTTCTCTTGCACAGATAGGTGACTTGGGAGCAACA 867
Query 1168 CGTATTGATAAGTGGAGCAATCTGTTCAAATCTTCCGATGAGTCTACCAAAAACAAAGAG 1227
||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 868 CGTGTTGATAAGTGGAGCAGTCTGTTCAAATCTTCCGATGAGTCTACCGAAAACAAAGAA 927
Query 1228 AAAGACTCGAAAGAAGGTGCACTCGGAGCAGGTTCGAGATTAGTCAATCTTGGAAAAACT 1287
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 928 AAAGACTCAAAAGAAGGTGCACTCGGAGCAGGTTCAAGATTAGTCAATCTTGGAAAAACT 987
Query 1288 AAAGAATGGGAAACAGCTTCCAATAATGCAGATGAGCGAAGAACTCAACCATCAGTGTCA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AAAGAATGGGAAACAGCTTCCAATAATGCAGATGAGCGAAGAACTCAACCATCAGTGTCA 1047
Query 1348 CAGTCTGGTACATCTTACTCATCAGCTCTGAGTCACATGACCGCTTCTTCAACTCAGGAG 1407
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1048 CAGTCTGGTACATCTTACTCATCAGCTCTGAAAAACATGACCGCTTCTTCAACTCTGGAG 1107
Query 1408 AAGAAAAATTCTATAACAAATGAAGGTTCATCTCAAGCATGTAAAGGTGTTGAAAATCCT 1467
||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1108 AAGAAAACTTCTTTGACAAATGAAGTTTCATCTCAAGCATGTAAAGGTGTTGAAAATCAT 1167
Query 1468 TGGACATCTGCTGCTCGAGTTCCACCTATACACCAAGACAGTGGAGGATTCAGAAATGCT 1527
|||||||| ||| ||||||||||| || | | ||||||||||||| ||||||||||||
Sbjct 1168 TGGACATCGGCTTCTCGAGTTCCATCTTTCCGCCAAGACAGTGGAACTTTCAGAAATGCT 1227
Query 1528 GCAATGGAAGGTGAAGATGTCAAAGTGAATGCTTATCATCATCAGCAAAATCTCCATCCA 1587
||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1228 TCAAAGGAAGGTGACGATGTCAAAGTGAATGCTTATCATCATCAACAAAATCTCCATCCA 1287
Query 1588 ACACAAAAGGGAACCTCTACTACAGCTAACAATAGAATAGTACCTAGCATTAGCAAGGAA 1647
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1288 ACACAAAAGGGAACCTCTACTACAGCTAACAATAGAATAGGAACTAGCATTAGCAAGGAA 1347
Query 1648 GAGCCTGCTGAGGATACATATTCATTCATCGATTGGGATGCAACATCTTCCTTTCAAGTC 1707
|| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1348 GATCCTGCTGAGGATACATATTCAGTCATCGATTGGGATGCAGCATCTTCCTTTCAAGTC 1407
Query 1708 CATCTCGATGGACTGAACAAGATTTTGGAGGATCCTAAGGATAAGGAATGTTTCAAGAGC 1767
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1408 CATCTGGATGGATTGAACAAGATTTTGGAGGATCCTAAGGATAAGGACTGTTTCAAGAGC 1467
Query 1768 TTAGTGGGTAACACAGGACAAGCTTCTTCATCTATGGTGCCTAACAGTTGGGAGGATGAC 1827
|| | |||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 1468 TTTGCGGGTAACACAGGACAAGCTTCTTCATCTGTAGTGCCTAATTGTTGGGAGGATGAC 1527
Query 1828 TTTGAGGAAAGAAGTATAGCTAAATCGCCTTGTGGATCATCGTATGTTTCTGCCGGTACA 1887
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 1528 TTTGAGGAAAGAAGTATAGCTAAATCGCCTTGTGGATCTTCGTATGTTTCCGCCGCTACA 1587
Query 1888 GGAGACGTGGTTGATGACATCGGACGTATGGATAATTTCAAGATGGAAATTGGATCTCCC 1947
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1588 GGAGACGTGGTTGATGACATCGGCCGTATGGATAATTTCAAGATGGAAATTGGATCTCCC 1647
Query 1948 ACTGTTGTGGATATATTGACTGAGCTATTGGCGGAAGTCAAGGAGTTGAAGCATACTCAG 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 ACTGTTGTGGATATATTGACTGAGCTATTGGCGGAAGTCAAGGAGTTGAAGCATACTCAG 1707
Query 2008 CTGAAACAAGCTGAGAGGATGATTACTTTGGAGATGGAGCTGCTTGAAACAAGAAGGGAT 2067
|||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1708 ATGAAACAAGCCGAGAGGATGATTACTTTGGAGATGGAGCAGCTTGAATCAAGAAGGGAG 1767
Query 2068 ATACTTCGGCTAAAAGGGAGCAATGGAAGTTTTTAAGCATATGGTAACTAGCTACTTTCT 2127
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1768 ATACTTCGGCTAAAAGGGAGCAATGGAAGTCTTTAAGCATATGGTAACTAGCTACTTTTT 1827
Query 2128 TTCTTTTGAACAAATGCGCTAAAAGGAAGAA 2158
|||||||||||||||||| |||||||||||
Sbjct 1828 TTCTTTTGAACAAATGCGAAAAAAGGAAGAA 1858
Score = 82.4 bits (44), Expect = 1e-14
Identities = 71/82 (87%), Gaps = 9/82 (11%)
Strand=Plus/Plus
Query 305 AGCTCGGAAACCTTGAATCTCTCTTCGGT---------CGTCTCCTTAAACCTCAAGTAG 355
||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 171 AGCTCGGAAACCTTGAATCTCTCTTCGGTGAGTGAGATCGTCTCCTTCAACCTCAAGTAG 230
Query 356 CTGTGCGCTTAAGGAATCTGAG 377
|||| |||||||||||||||||
Sbjct 231 CTGTTCGCTTAAGGAATCTGAG 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90769053835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5