BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11020.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478447 jgi|Araly1|478447|fgenesh2_kg.3__1148__AT3G11020.1 1775 0.0
> Ahg478447 jgi|Araly1|478447|fgenesh2_kg.3__1148__AT3G11020.1
Length=1373
Score = 1775 bits (961), Expect = 0.0
Identities = 1276/1418 (90%), Gaps = 61/1418 (4%)
Strand=Plus/Plus
Query 1 GATTTCTGTAAAAAGTTTGTTGTCTTTACaaaaagaaaagaaaaaagagacgctagaaag 60
|||||||||||||||||| |||||||| | ||| |||| |||||| |||||||||||||
Sbjct 1 GATTTCTGTAAAAAGTTTTTTGTCTTT--AGAAA-AAAA-AAAAAA-AGACGCTAGAAAG 55
Query 61 aacgcgaaagct-tgcgaagaagaTTTGCTTTTGATCGACTTAACACGAACAACAAACAA 119
|||||||||||| | ||| ||||||||| |||||||||| ||||||||||| | ||||||
Sbjct 56 AACGCGAAAGCTCT-CGACGAAGATTTGATTTTGATCGATTTAACACGAACCA-AAACAA 113
Query 120 CATCTGCGTGATAAAGAAGAGATTTTTGCCTAAATAAAGAAGAGATTCGACTCTAATCCT 179
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 114 CATCTGCGTGATAAAGAATAGATTTTTGCC-CATTAAAGAAGAGATTCGACTCTAATCCT 172
Query 180 GGAGTTATCATTCACGATAGATTCTTAGATTGCGACTATAAAGAAGAAGATGGCTGTATA 239
||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 173 GGAGTTATCATTCACGATAGATTCTAAGATTGCGAC--TAAA-AAGAAGATGGCTGTATA 229
Query 240 TGAACAAACCGGAACCGA-GCAGCCGAAGAAAAGGAAATCTAGGGCTCGAGCAGGTGGTT 298
|||| |||| |||||||| || ||||||||||||||||| ||||||||||||| |||||
Sbjct 230 TGAAAAAACTGGAACCGATACA-CCGAAGAAAAGGAAATCGAGGGCTCGAGCAGATGGTT 288
Query 299 TAACGGTGGCTGATAGGCTAAAGAAGTGGAAAGAGTACAACGAGATTGTTGAAGCTTCGG 358
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CAACGGTGGCTGATAGGTTAAAGAAGTGGAAAGAGTACAACGAGATTGTTGAAGCTTCGG 348
Query 359 CTGTTAAAGAAGGAGAGAAACCGAAACGCAAAGTTCCTGCGAAAGGGTCGAAGAAAGGTT 418
|| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 349 CTATTAAAGATGGAGAGAAACCCAAACGCAAGGTTCCTGCGAAAGGGTCAAAGAAAGGTT 408
Query 419 GTATGAAGGGTAAAGGAGGACCAGATAATTCTCACTGTAGTTTTAGAGGAGTTAGACAAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTATGAAGGGTAAAGGAGGACCAGATAATTCTCACTGTAGTTTTAGAGGAGTTAGACAAA 468
Query 479 GGATTTGGGGTAAATGGGTTGCAGAGATTCGAGAACCGAAAATAGGAAC-TAGACTTTGG 537
|||||||||||||||||||||||||||| || |||||||| | ||| || |||||||||
Sbjct 469 GGATTTGGGGTAAATGGGTTGCAGAGATACGGGAACCGAATAGAGG-ACAAAGACTTTGG 527
Query 538 CTTGGTACTTTTCCTACCGCGGAAAAAGCTGCTTCCGCTTATGATGAAGCGGCTACCGCT 597
|||||||||||||||||||||||| |||||||| |||||||||||||||| |||| | |
Sbjct 528 CTTGGTACTTTTCCTACCGCGGAAGAAGCTGCTGCCGCTTATGATGAAGCCGCTAGGGTT 587
Query 598 ATGTACGGTTCATTGGCTCGTCTTAACTTCCCTCAGTCTGTTGGGTCTGAGTTTACTAGT 657
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 588 ATGTACGGTCCATTGGCTCGTCTTAACTTCCCTCAGTCTGTTGTGTCTGAGTTTACTAGT 647
Query 658 ACGTCTAGTCAATCTGAGGTGTGTACGGTTGAAAATAAGGCGGTTGTTTGTGGTGATGTT 717
|| || ||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 648 ACATCGAGTCAGTCTGAGGTGTGTACGGTTGAAAATAAGGCGGTTCTTCGTGGTGATGTT 707
Query 718 TGTGTGAAGCATGAAGATACTGATTGTGAATCTAATCCATTTAGTCAGATTTTAGATGTT 777
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 708 TGTGTGAAGCATGAGGATACTGATTGTGAATCTAAACCATTTAGTCAGATTTTAGATGTT 767
Query 778 AGAGAAGAGTCTTGTGGAACCAGGCCGGACAGTTGCACGGTTGGACATCAAGATATGAAT 837
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 768 AGGGAAGAGTCTTGTGGAACCAGGCCGGACAGTTGCACGGTTGGACATCAAGATACGAAT 827
Query 838 TCT-TCGCTGAATTACGATTTGCTGTTAGAGTTTGAGCAGCAGTATTGGGGCCAAGTTTT 896
||| | ||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 828 TCTGT-GCTGAATTACGATTTGCTGTTAGAGTTTGAGCAGCAGTATTGGAGCGAAGCTTT 886
Query 897 GCAGGAGAAAGAGAAACCGAAGCAGGAAGAAGAGGAGATACAGCA-ACAGCAACAGGAAC 955
||||||||||||||||||||||||||||||||| ||||||||||| | || || |||
Sbjct 887 GCAGGAGAAAGAGAAACCGAAGCAGGAAGAAGAAGAGATACAGCAGA-AG-AAGAGG--- 941
Query 956 AGCA-ACAGCAACAGCTGCAACCGGATTTGCTTACTGTTGCAGATTACGGTTGGCCTTGG 1014
|| | ||||||||| | ||| | | || || | ||| | ||| | |||
Sbjct 942 AG-ATACAGCAACA--T-CAA-C--A---GC-AACAGCAGCA-A--CCGGAT----TTGC 983
Query 1015 TCTAATGATATTGTAAATGATCAGACTTC-TTGGGATCCTAATGAGTGCTTTGATATTAA 1073
| || || ||| | || || || ||| ||||||||||||||||| |||||||||| |
Sbjct 984 T-TACTG---TTGCAGATTAT--GA-TTCTTTGGGATCCTAATGAGTTCTTTGATATTCA 1036
Query 1074 TGAACTCCTTGGAG--AT--TTG-A---ATG-AACCTGGTCCCCATCAGAGCCAAGACCA 1124
|||||||||||||| || || | ||| |||||||||| |||||||||| ||||
Sbjct 1037 TGAACTCCTTGGAGACATGAATGAAGGCATGTTACCTGGTCCCGATCAGAGCCAGGACCC 1096
Query 1125 AAACCACGTAAATTCTGGTAGTTATGATTTGCATCCGCTTCATCTCGAGCCACACGATGG 1184
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1097 AAACCATGTAAATTCTGGTAGTTATGATCTGCATCCGCTTCATCTCGAGCCACACGATGG 1156
Query 1185 TCACGAGTTCAATGGTTTGAGTTCTCTGGATATTTGAGAGTTCTGAGGCAATGGTCCTAC 1244
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1157 TCACGAGTTCGATGGTTTGAGTACTCTGGATCTTTGAGAGTTCTGAGGCAATGGT-CTAC 1215
Query 1245 AAGACTACAACATAATCTTTGGATTGATCATAGGAGAAACAAGAAATAGGTGTTAATGAT 1304
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1216 AATACTACAACATAATCTTCGGATTGATAATAGGAGAAACAAGAAATAGGTGTTAATGAT 1275
Query 1305 CTGATTCACAATGAAAAAATATTTAATAACTCTATAGTTTTTGTTCTTTCCTTGGATCAT 1364
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1276 CTGATTCACAATGAAAAAATATTGAATAACTCTATAGTCTTTGTTCTTTCCTTGGATCAT 1335
Query 1365 GAACTGTTGCTTCTCATCTATTGAGTTAATATAGCGAA 1402
|| ||||| |||||||||||||||||||||||| |||
Sbjct 1336 AAAGTGTTGATTCTCATCTATTGAGTTAATATAGAGAA 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5