BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11030.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478448 jgi|Araly1|478448|fgenesh2_kg.3__1149__AT3G11030.1 2163 0.0
Ahg359609 jgi|Araly1|359609|fgenesh1_pg.C_scaffold_467000002 422 5e-117
Ahg483086 jgi|Araly1|483086|fgenesh2_kg.4__2146__AT2G40320.1 392 4e-108
> Ahg478448 jgi|Araly1|478448|fgenesh2_kg.3__1149__AT3G11030.1
Length=1407
Score = 2163 bits (1171), Expect = 0.0
Identities = 1345/1426 (94%), Gaps = 23/1426 (2%)
Strand=Plus/Plus
Query 69 aaa-aaaaaaaaTATGACAACGGCGTTGTTTTCACCGTCTAACCGTAGAAAACGCCGTCT 127
||| |||||||| |||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1 AAAGAAAAAAAA-ATGACATCGGCGTTGTTATCACCGTCGCACCGTAGAAAACGCCGTCT 59
Query 128 CACACACTTCTTCTTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGCCA 187
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CACTCATTTCTTCTTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGTCA 119
Query 188 -CGATTTCATCTCTTTCTCTCGTCGATCTCTTCACTCTCCGACGATCGTCCACCAATCCG 246
| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TC-ATTTCATCTCTTTCTCCCGTCGATCTCTTCACTCTCCGACAATCGTCCACCAATCCG 178
Query 247 CAATCGTCGTTGTAGTTGACGAacctcctccgcctccaccaacatctcctcctccgcctt 306
|||||||||||||||| ||||||||||||||||||||| | || ||| |
Sbjct 179 CAATCGTCGTTGTAGTGGACGAACCTCCTCCGCCTCCA-C--CA---------CCG---T 223
Query 307 ctcctccaccaccgtctcctccaccaccatctcctccaccgccatctcctccgccacctG 366
|||||||||| ||||||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 224 CTCCTCCACCTCCGTCTCCTCCACCACCGTCTCCTCCTCCGCCATCTCCACCACCACCTG 283
Query 367 CTTTTGCAG-TAGGTAAAACGCCGGAAGGATGCGATGTCTTCAAAGGGAATTGGGTCAAA 425
||||||| | | || || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 284 CTTTTGC-GTTGGGGAAGACGCCGGAAGGATGCGATGTGTTCAAAGGGAATTGGGTCAAA 342
Query 426 GACTGGTCAACGCGTCCACTTTACAGAGAATCCGAGTGTCCGTACATTCAGCCGCAGCTC 485
|||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 343 GACTGGTCAACGCGGCCGTTTTACAGAGAATCTGAGTGTCCGTACATTCAGCCGCAGCTC 402
Query 486 ACTTGCCGCACGCATGGCCGTCCCGATAGTGATTATCAGTCATGGAGATGGCGACCTGAT 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 403 ACTTGCCGCACGCATGGCCGTCCCGATAGTGATTATCAGTCATGGAGATGGCAACCTGAA 462
Query 546 TCCTGCTCACTTCCTTCGTTTAATGCGACGGTGATGTTGGAGAGCTTAAGAGGGAAGAAG 605
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 TCCTGCTCACTTCCTTCGTTTAACGCGACGGTGATGTTGGAGAGCTTAAGAGGGAAGAAG 522
Query 606 ATGATGTTCGTTGGAGATTCGTTGAACAGAGGAATGTATGTTTCTCTCATCTGTCTTCTT 665
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ATGATGTTTGTGGGGGATTCGTTGAACAGAGGAATGTATGTTTCTCTCATCTGTCTTCTT 582
Query 666 CATTCACAAATCCCAGAGAACTCCAAATCCATGGATACTTTCGGATCACTCACCGTCTTC 725
||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 583 CATTCACAAATCCCAGAAAATTCTAAATCTATGGATACTTTCGGATCACTCACCGTCTTC 642
Query 726 TCTCTCAAGGATTACAATGCAACGATTGAGTTCTATTGGGCACCGTTTCTTCTAGAATCG 785
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 643 TCTCTCAAGGACTACAATGCAACGATTGAGTTCTATTGGGCACCATTTCTTCTTGAATCG 702
Query 786 AATTCAGATAACGCAACAGTTCATAGAGTATCAGATCGAATTGTGAGGAAAGGATCGATC 845
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 703 AATTCAGATAACGCTACAGTTCATAGAGTATCAGATCGGATTGTGAGGAAAGGATCGATC 762
Query 846 AACAAACACGGTAGGCATTGGCGAGGGGCTGATATAGTTGTGTTCAACACATACTTGTGG 905
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 763 AACAAACACGGTAGGCATTGGCGAGGCGCTGATATAGTCGTGTTCAACACATACTTGTGG 822
Query 906 TGGAGGACTGGCTTCAAAATGAAGATCTTGGAAGGTTCTTTCAAGGATGAGAAGAAGAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 823 TGGAGGACTGGCTTCAAAATGAAGATCTTGGAAGGTTCTTTCAAGGATGAGAACAAGAGA 882
Query 966 ATCGTTGAGATGGAGAGTGAAGATGCTTATAGAATGGCG-TTGAAGACTATGGTTAAATG 1024
||||||||||||||||| || ||||| ||| |||||||| || |||||||||||||||||
Sbjct 883 ATCGTTGAGATGGAGAGCGAGGATGCATATCGAATGGCGCTT-AAGACTATGGTTAAATG 941
Query 1025 GGTGAAGAAGAATATGGATCCATTGAAGACGAGGGTTTTCTTTGCTACCATGTCTCCTAC 1084
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 942 GGTGAAGAAGAATATGGATCCATTGAAGACAAGGGTTTTCTTTGCTACCATGTCTCCTAC 1001
Query 1085 TCATTACAAGGGCGAGGATTGGGGAGGCGAACAAGGAAAAAATTGTTACAATCAAACGAC 1144
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1002 TCACTACAAGAGCGAGGATTGGGGAGGCGAACAAGGAAAGAATTGTTACAATCAAACGAC 1061
Query 1145 ACCGATCCAAGACATGAACCATTGGCCATCAGACTGCAGCAAAACCTTAATGAAAGTGAT 1204
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ACCGAACCAAGACATGAACCATTGGCCATCAGACTGCAGCAAAACCTTAATGAAAGTGAT 1121
Query 1205 AGGAGAGGAATTAGACCAAAGAGCAGAGTTTCCGGTGACGGTACTTAACATTACACAACT 1264
||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1122 AGGGGAGGAATTAGACCAAAGAGCGGATTTTCCGGTGACAGTACTTAACATTACACAACT 1181
Query 1265 CTCTGGCTATCGGAAAGACGCGCACACGTCAATCTACAAGAAGCAATGGAGCCCATTGAC 1324
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1182 CTCAGGCTATCGGAAAGACGCGCACACGTCAATTTACAAGAAGCAATGGAGCCCATTGAC 1241
Query 1325 GAAGGAGCAGCTAGCAAATCCGGCTAGCTACTCAGACTGTATACATTGGTGCTTGCCTGG 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GAAGGAGCAGCTAGCAAATCCGGCTAGCTACTCAGACTGTATACATTGGTGCTTGCCTGG 1301
Query 1385 TCTTCAAGATACTTGGAACGAGCTTTTCTTTGCCAAGTTATTTTATCCATGATTCTTTTC 1444
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TCTTCAAGATATTTGGAACGAGCTTTTCTTTGCCAAGTTATTTTATCCATGATTCTTTTC 1361
Query 1445 TCTAAATTCAAGAtttttttAGAACTGTAATTGTAAATTATGGTTA 1490
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCTAAAGTCAAGATTTTTTTAGAACTGTAATTGTAAATTATGGTTA 1407
> Ahg359609 jgi|Araly1|359609|fgenesh1_pg.C_scaffold_467000002
Length=335
Score = 422 bits (228), Expect = 5e-117
Identities = 314/352 (89%), Gaps = 19/352 (5%)
Strand=Plus/Plus
Query 81 ATGACAACGGCGTTGTTTTCACCGTCTAACCGTAGAAAACGCCGTCTCACACACTTCTTC 140
|||||| |||||||||| |||||||| |||||||||||||||||||||| || ||||||
Sbjct 1 ATGACATCGGCGTTGTTATCACCGTCGCACCGTAGAAAACGCCGTCTCACTCATTTCTTC 60
Query 141 TTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGCCA-CGATTTCATCTC 199
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 61 TTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGTCATC-ATTTCATCTC 119
Query 200 TTTCTCTCGTCGATCTCTTCACTCTCCGACGATCGTCCACCAATCCGCAATCGTCGTTGT 259
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TTTCTCCCGTCGATCTCTTCACTCTCCGACAATCGTCCACCAATCCGCAATCGTCGTTGT 179
Query 260 AGTTGACGAacctcctccgcctccaccaacatctcctcctccgccttctcctccaccacc 319
||| |||||||||||||||||||||||| | | | | |||||||||| ||
Sbjct 180 AGTGGACGAACCTCCTCCGCCTCCACCA-C--C---------G--T-CTCCTCCACCTCC 224
Query 320 gtctcctccaccaccatctcctccaccgccatctcctccgccacctGCTTTTGCAGTAGG 379
||||||||||||||| |||||||| ||||||||||| || |||||||||||||| || ||
Sbjct 225 GTCTCCTCCACCACCGTCTCCTCCTCCGCCATCTCCACCACCACCTGCTTTTGC-GTTGG 283
Query 380 TAAA-ACGCCGGAAGGATGCGATGTCTTCAAAGGGAATTGGGTCAAAGACTG 430
|| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 284 GGAAGACGCCGGAAGGATGCGATGTGTTCAAAGGGAATTGGGTCAAAGACTG 335
> Ahg483086 jgi|Araly1|483086|fgenesh2_kg.4__2146__AT2G40320.1
Length=1552
Score = 392 bits (212), Expect = 4e-108
Identities = 762/1019 (75%), Gaps = 71/1019 (7%)
Strand=Plus/Plus
Query 452 AGAATCCGAGTGTCCGTACATTCAGCCGCAGCTCACTTGCCGCACG--CATGGCCGTCCC 509
||||| ||||||||||||||||| || ||||| || || || | || |||||||||
Sbjct 484 AGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACGTG--TCAAGAACACGGCCGTCCC 541
Query 510 GATAGTGATTATC-AGTCATGGAGATGGCGACCTGATTC-CTGCTCA-CTTCCTTCGTTT 566
|| | ||||| | | || ||| | |||| ||| | || ||| | ||||| |||||
Sbjct 542 GACAAAGATTACCAATTC-TGGCGGTGGCAACC-CAATCATTGC-GATCTTCCCTCGTTC 598
Query 567 AATGCGACGGTGATGTTGGAGAGC-TTAAGAGGGAAGAAGATGATGT-TCGTTGGAGATT 624
|| ||| || ||||| |||||| | || |||||||||| |||||||| | || ||||| |
Sbjct 599 AACGCGTCGCTGATGCTGGAGA-CATTGAGAGGGAAGAGGATGATGTAT-GTAGGAGACT 656
Query 625 CGTTGAACAGAGGAATGTATGTTTCTCTCATCTGTCTTCTTCATTC-ACAAATCCCAG-A 682
| || ||| | ||||||| ||| || | || ||||||||||| || | ||||| | |
Sbjct 657 CATTAAACCGTGGAATGTTTGTATCGATGATTTGTCTTCTTCA-TCGTCTTATCCCTGAA 715
Query 683 GAACTC-CAAATCCATGGATA-CTTTCGGATCACTCACCGTCTTCTCT-CTCAAGGATTA 739
| | || ||||| || | | | | || || ||||| |||||| || | |||||| ||
Sbjct 716 G-A-TCAGAAATCAATCAAAACCAAT-GGTTCCCTCACTGTCTTCACTGC-CAAGGAGTA 771
Query 740 CAATGCAACGATTGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGATAACGC 799
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 772 TAACGCGACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGC 831
Query 800 AACAGTTCATAGAGTATCAGATCGAATTGTGAGGAAAGGATCGATCAACAAACACGGTA- 858
|| || |||||| |||| ||| | ||||||| |||||||| || |||||||| || |
Sbjct 832 AATTGTCCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGG-AC 890
Query 859 GGCATTGGCGAGGGG-CTGATATAGTTGTGTTCAACACATA-CTTGTGGTGGAGGACTGG 916
|||| ||| ||| | | |||||| | || |||||||| || || ||||||| ||||||
Sbjct 891 GGCACTGGAAAGGCGTC-GATATAATCGTATTCAACACTTATCTA-TGGTGGATGACTGG 948
Query 917 CTTCAAAATGAAGATCTTGGAAGGTTC-TTT-CAAGGATGA-GAAGAAGAGA-ATCGTTG 972
|| || ||||| |||||| |||| || ||| | | || | || ||||| | ||||| |
Sbjct 949 ATTGAAGATGAACATCTTGCAAGGATCGTTTGCC-G-ATAAAGA-GAAGA-ATATCGTGG 1004
Query 973 AGATGGAGAGTGAAGATGCTTATAGAATGGCGT-TGAAGACTATGGTTAA-ATGGGTGAA 1030
|| | || ||||||||| || | |||| || |||||| |||| || | |||||||||
Sbjct 1005 AGGTTTCGACTGAAGATGCATACCGGATGG-GTATGAAGAGTATG-TTGAGATGGGTGAA 1062
Query 1031 GAAGAATATGGATCC-ATTGAAGACGAGGGTTTTCTTTGCTACCATGTCTCCTACTCATT 1089
||| |||||||||| | ||| || ||||||||||| | | ||||||||||||||||
Sbjct 1063 GAACAATATGGATCGTAA-GAAAACTAGGGTTTTCTTCACAAGCATGTCTCCTACTCATG 1121
Query 1090 ACAAGGGCG-AGGATTGGGGAGGCGAACAAGGAAAAAATTGTTACAATCAAACGACACCG 1148
||||||| || |||||||||| | || || | ||||| || ||||| || ||||
Sbjct 1122 CCAAGGGCATAG-ATTGGGGAGGTGGACCGGGTCAGAATTGCTATAATCAGACAACACTA 1180
Query 1149 ATCCAAGA-CATGAACCATTGGCCATCAGACTG-CAGCAAAACCT-TAATGAAAGTGATA 1205
|| |||| | || | ||||| |||||| || | | |||| | |||||||||||||
Sbjct 1181 ATAGAAGATCC-GAGCTATTGGGGATCAGATTGTCGG-AAAAG-TATAATGAAAGTGATT 1237
Query 1206 GGAGAGGAATTAGACCAAAGAGC-AGAGTTTCCGGTGACGGTACTTAACATTACACA-AC 1263
||||| | || | || || | | | || | ||| |||| ||||| || || |
Sbjct 1238 GGAGAAGTGTTTGG--AA-GATCGAAAACA-CCAATAACGTTACTGAACATAACGCAGA- 1292
Query 1264 TCTCTGGCT-ATCGGAAAGACGCGCACACGTCAATCTACAAGAAGCAATGGAGCCCA-TT 1321
| || | | || ||||||| || || ||||| || ||||||||||| ||||| ||| ||
Sbjct 1293 TGTC-GAATTATAGGAAAGATGCTCATACGTCGATATACAAGAAGCAGTGGAGTCCACTT 1351
Query 1322 GAC-GAAGGAGCAGCTAGCA-AATCCGGCTAGCTACT-CAGACTGTATACATTGGTGCTT 1378
|| | ||||||||| | | ||||| | ||||| | | || ||| |||| ||||||||
Sbjct 1352 -ACAGC-GGAGCAGCTGG-AGAATCCAACGAGCTA-TGCGGATTGTGTACACTGGTGCTT 1407
Query 1379 GCCTGGTCTTCAAGATACTTGGAACGAGCTTTTCTTTGCCAAGTTATTT-TATCCATGA 1436
|||||| ||||||||||||||||| |||||| ||||||| || | ||| ||||| |||
Sbjct 1408 GCCTGGCCTTCAAGATACTTGGAATGAGCTTCTCTTTGCTAAACT-TTTCTATCCTTGA 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5