BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11040.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903991 jgi|Araly1|903991|Al_scaffold_0003_1119 2915 0.0
Ahg497439 jgi|Araly1|497439|fgenesh2_kg.467__2__AT3G11040.1 1886 0.0
Ahg487338 jgi|Araly1|487338|fgenesh2_kg.6__472__AT5G05460.1 1020 0.0
> Ahg903991 jgi|Araly1|903991|Al_scaffold_0003_1119
Length=2118
Score = 2915 bits (1578), Expect = 0.0
Identities = 1941/2113 (92%), Gaps = 37/2113 (2%)
Strand=Plus/Plus
Query 1 ATGCCCAAATCCAACGATGACGACGTTGCACAATCTGAAGCCGTTCCGTTGCTTGATCTT 60
|||||||||||||| |||| ||| || ||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGCCCAAATCCAATGATGCCGATGTCGCAGAATCTGAAGCCGTTCCGTTGCTCGATCTT 60
Query 61 GTCAAGCCATCGTTACCTATATCTTTCCCGATCAAAGCTCTTCAAGACCTGAAATCTCGC 120
| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 GCCAAGCCGTCGTTACCTATATCTTTCCCGATCAAATCTCTTCAAGATCTGAAATCTCGT 120
Query 121 TCTTACTTTGATTCCTTTCATTTCCAGTTTAATCGCTCCACAGTACCTTTCCGCCGAAAC 180
|||||||| | ||||||||| |||||||||||||||||||| |||||| |||| ||| ||
Sbjct 121 TCTTACTTCGTTTCCTTTCACTTCCAGTTTAATCGCTCCACCGTACCTCTCCGGCGAGAC 180
Query 181 TCCGACTG-TTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTA 239
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCGA-TGACTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTA 239
Query 240 TGTAGATGACAAGTGGGTACAAGGGTGTGAAAACGAAGCCGGATTTGCGATTTGGCATTG 299
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 TGTAGATGACAAGTGGGTACAAGGATGTGAAAACGACGCCGGATTTGCGATTTGGCATTG 299
Query 300 GTACTTGATGGACATTTTTGTTTACTTCTCTCATTCTCTGGTCACTATTCCTCCTCCTTG 359
||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 300 GTATTTGATGGACATTTTTGTTTACTTCTCTCATTCTTTGGTCACTCTTCCTCCTCCTTG 359
Query 360 CTGGACCAATACTGCTCATAGGCATGGCGTTAAAGTATTGGGGACTTTCATCACAGAATG 419
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CTGGACTAACACTGCTCATAGGCATGGTGTTAAAGTATTGGGGACTTTCATCACAGAATG 419
Query 420 GGATGAAGGAAAAGCTACCTGCAAAGAGATGCTTGCCACAAAGGAGTCTGCTCAAATGTA 479
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 420 GGATGAAGGTAAAGCTACCTGCAAAGAGATGCTTGCCACAAAAGAGTCTGCTCAGATGTA 479
Query 480 TGCAGAGCGTTTGGCTGAACTTGCTACTGCTCTAGGCTTTGATGGGTGGCTGATAAATAT 539
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 480 TGCAGAGCGTTTGGCAGAACTTGCTACTGCTCTTGGCTTTGATGGGTGGCTGATTAATAT 539
Query 540 AGAGAATGATATAGATGAGGAACAGATTCCAAATATGAAGGAATTCGTCAG-C--C---- 592
||||||||||||||||||||| |||||||||||| |||||||||| || || | |
Sbjct 540 AGAGAATGATATAGATGAGGAGCAGATTCCAAATTTGAAGGAATTTGTAAGCCATCTAAA 599
Query 593 ---A-TC-T--aaaaaaaGTCTTGCATTTATCGACACCTGGGGCTTTAGTCATATGGTAT 645
| || | ||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 600 AAAAGTCTTGCAAAAAAAGTCTTGCATTTATCTACACCTGGGGC----G---T-TGGTAT 651
Query 646 GACAGTGTCACTGTTCGTGGTAATCTTCAGTGGCAAGATCAATTGACTGAGCTGAACAAA 705
|||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 652 GACAGTGTCACTATTCATGGTAATCTTCAATGGCAAGATCAATTGACTGAGCTGAACAAA 711
Query 706 CCTTTCTTTGACTTATGCGATGGAATATTCATGAACTACACATGGAAGGAGAGCTACCCA 765
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 712 CCTTTCTTTGACTTATGCGATGGAATATTCATGAACTATACATGGAAGGAGAGCTACCCA 771
Query 766 AACCTATCAGCTGAAGTTGCTGGGGACAGAAAATTCGATGTCTACATGGGAATTGATGTT 825
|| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 772 AAACTATCAGCTGAAGTTGCCGGGGACAGAAAGTTCGACATCTACATGGGAATTGATGTC 831
Query 826 TTTGGGCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTGGATTTGCTG 885
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 832 TTTGGCCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTTGATTTGCTG 891
Query 886 AAGAGAAACAATGTGTCAGCTGCCATATTTGCTCCTGGATGGGTTTATGAGACTGCACAA 945
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 892 AAGAGAAGCAATGTGTCAGCTGCCATGTTTGCTCCTGGATGGGTTTATGAGACTGCACAA 951
Query 946 CCCCCCAATTTTCACACAGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGTCATGGGGA 1005
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 952 CCCCCCAATTTTCATACAGCTCAGAATAAATGGTGGTCAATTGTCGAGAAGTCATGGGGA 1011
Query 1006 ATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCAGATTTCAATCAGGGCTTTGGT 1065
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 ATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCGGATTTCAATCAGGGCTTTGGT 1071
Query 1066 TACCATGTTTCACTCGAAGGTCGCCAACTGTCAGATTCTCCATGGTACAACATTTCTTGC 1125
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1072 TACCATGTTTCACTCGAAGGTCGCCAACTGTCAGATGCTCCATGGTACAACATATCTTGC 1131
Query 1126 CAAAGTCTTCAGCCTCTCCTAGAATTCAAT---GAAGACAACAAAGATATCATCCAGGTC 1182
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1132 CAAAGTCTTCAGCCTCTCTTAGAATTCAATGAAGAAGACAACAAAGATATCATCCACGTC 1191
Query 1183 ACTGTTGACCAAGAAGGGAAAAATGTTTTTGACTTTTCTGAGC-AACATTTAAACAATTA 1241
|||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1192 ACTGTTGA-CAAAAAGGGAAAAATGTTTTTGACAATTCTGAGCAAACATTTAAACAATTA 1250
Query 1242 CTATGAATATGATAGTGCTCGAGAGGCATCTTTTAACGGAGGAGGGAACATCGTTTTTAG 1301
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1251 CTATGAATTTGATAGTGCTCGAGAGGCATCTTTTAACGGAGGAGGGAACATCGCTTTTAG 1310
Query 1302 AGGAAAACTCAAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTTCAGCT 1361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGGAAAACTCAAGGGATATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTTCAGCT 1370
Query 1362 TTCATCTTCCCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAATCTTGG 1421
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1371 TTCATCTTCCCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAAACTTGG 1430
Query 1422 AATCCTGCTTTCTTTCTCGTCTCCATCACTAG-AGACTAAATCCATACTCGTGGCGCCAG 1480
|||||||||||||||||| |||||||||| || |||| |||||||| ||||| || |||
Sbjct 1431 AATCCTGCTTTCTTTCTCATCTCCATCAC-AGGAGACGAAATCCATTCTCGTTGCCCCAC 1489
Query 1481 AGGATCCCATCCGCAGATTTGACGACATGTCCTTACAGTGTCTCACCACATCAGTGCAGA 1540
| ||| ||||||| ||||| ||||||||| || |||||||||| ||||||||| |||||
Sbjct 1490 AAGATTCCATCCGTAGATTCAACGACATGTTCTCACAGTGTCTCGCCACATCAGCGCAGA 1549
Query 1541 CTGTATCCGAGTGGACGGTACACGAGGCAAGTCTTGTCATGGATGGTCACACACTGACTG 1600
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1550 CTGTATCCGAGTGGACGGTACACGAGACAAGCCTTGTCATGGATGGTCACACACTGACTG 1609
Query 1601 AAATCTCTGCCTTTTGCTACAGACCAGAGAATTCGACAAAGAGTGCAGAATTTGTTGCAT 1660
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1610 AAATCTCTGCCTTTTGCTACAGACCAGATAATTCGACAAAGAGTGCAGAATATGTTGCAT 1669
Query 1661 TGCTCGGACACATCTCAGTCAAAGATCATGTTCAAAACCAGCAGAACCCCGAGATTTTAC 1720
|||| |||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||
Sbjct 1670 TGCTGGGACACATATCAATCAAAGATCATGTTCAGTCCCAGCAGAAACCCGAGACTTTAC 1729
Query 1721 TTCCAGCTTCATCGTGGGTCATCGAGGCTCATAACGTAGAGCTTGTACCAGGC-AATTCC 1779
||||||| ||| ||||||||||||| ||||||||| |||||||||||| ||| |||||
Sbjct 1730 TTCCAGCATCACCGTGGGTCATCGAAGCTCATAACATAGAGCTTGTAC-AGGGTAATTCT 1788
Query 1780 AGTTCCAAGATCCTCAGGGTTAAGCTAGAATGGAGACAGAAAGACCTCGAAGATTCCGCA 1839
|||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1789 GGTTCTAAGAGCCTCAGGGTTAAGCTAGAATGGAGACAGAAAGACCTTGAAGATTCTGCA 1848
Query 1840 TTCACAAGGTACAATGTATATGCAGAGAATGTGAAGTCGACTGATCTAAGACCGAGGAAG 1899
||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1849 TTCCCAAAGTACAATGTGTATGCAGAGAATGTGAAGTCGACTGATCTAAGATCGAGGAAG 1908
Query 1900 GTTCTAGAGAAACCGAAAAGCGAGACAGTGCTCCTTGGAATTGCTCACGTACCAGCCTAT 1959
|| ||||||||||||| ||| ||||||||| |||||||| | ||||||||||||||||||
Sbjct 1909 GTGCTAGAGAAACCGATAAGTGAGACAGTGTTCCTTGGAGTCGCTCACGTACCAGCCTAT 1968
Query 1960 TATGTAGCGGAACTGGTGGTAGAATCAGACGTGAA-GGCAGTCCGTTTCATGGTTCAAGC 2018
|| |||| ||||||||||||||||||||||||||| || |||||| ||| | ||||||||
Sbjct 1969 TACGTAGGGGAACTGGTGGTAGAATCAGACGTGAAAGG-AGTCCGCTTCGTAGTTCAAGC 2027
Query 2019 TTGTGGCGAAGATGCTTCATTGGGG-AAGCTGGATGAAGCTCTTAACCTTCTTGTGGACC 2077
|||||| |||||| ||||| ||| ||| || || | | | ||| ||||| || || |
Sbjct 2028 CTGTGGCAAAGATGGTTCAT-GGGCCAAGTTGTATTATTCCCCTAAGCTTCTAGTTGAAC 2086
Query 2078 TAGAAGGTCTCTC 2090
| |||||||||||
Sbjct 2087 TGGAAGGTCTCTC 2099
> Ahg497439 jgi|Araly1|497439|fgenesh2_kg.467__2__AT3G11040.1
Length=1929
Score = 1886 bits (1021), Expect = 0.0
Identities = 1241/1345 (92%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 758 GCTACCCAAACCTATCAGCTGAAGTTGCTGGGGACAGAAAATTCGATGTCTACATGGGAA 817
|||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 593 GCTACCCAAAACTATCAGCTGAAGTTGCCGGGGACAGAAAGTTCGACGTCTACATGGGAA 652
Query 818 TTGATGTTTTTGGGCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTGG 877
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 653 TTGATGTCTTTGGTCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTTG 712
Query 878 ATTTGCTGAAGAGAAACAATGTGTCAGCTGCCATATTTGCTCCTGGATGGGTTTATGAGA 937
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 713 ATTTGCTGAAGAGAAACAATGTGTCAGCGGCCATATTTGCTCCTGGATGGGTTTATGAGA 772
Query 938 CTGCACAACCCCCCAATTTTCACACAGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGT 997
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 773 CTGCACAACCCCCCAATTTTCATACAGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGT 832
Query 998 CATGGGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCAGATTTCAATCAGG 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CATGGGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCAGATTTCAATCAGG 892
Query 1058 GCTTTGGTTACCATGTTTCACTCGAAGGTCGCCAACTGTCAGATTCTCCATGGTACAACA 1117
| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 893 GATTTGGTTACCATGTTTCACTTGAAGGTCGCCAACTGTCAGATGCTCCATGGTACAACA 952
Query 1118 TTTCTTGCCAAAGTCTTCAGCCTCTCCTAGAATTCAATGAAGACAACAAAGATATCATCC 1177
| |||||||||||||||||| | | | || | || ||||||||||||||||||||||
Sbjct 953 TATCTTGCCAAAGTCTTCAGAAT-T-C---AA-TGAA-GAAGACAACAAAGATATCATCC 1005
Query 1178 AGGTCACTGTTGACCAAGAAGGGAAAAATGTTTTTGACTTTTCTGAGC-AACATTTAAAC 1236
| ||||||||| | | || |||||||||||||| ||||||||| |||||||||||
Sbjct 1006 ACGTCACTGTT------G-A-GG-AAAATGTTTTTGACATTTCTGAGCAAACATTTAAAC 1056
Query 1237 AATTACTATGAATATGATAGTGCTCGAGAGGCATCTTTTAACGGAGGAGGGAACATCGTT 1296
||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| | |
Sbjct 1057 AATTACTATGAATTTGATAGTGCTCGAGAGGGATCTTTTAACAGAGGAGGGAACATTGCT 1116
Query 1297 TTTAGAGGAAAACTCAAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TTTAGAGGAAAACTCAAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTT 1176
Query 1357 CAGCTTTCATCTTCCCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAAT 1416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CAGCTTTCATCTTCCCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAAA 1236
Query 1417 CTTGGAATCCTGCTTTCTTTCTCGTCTCCATCACTAG-AGACTAAATCCAT-ACTCGTGG 1474
||||||||||||||||||||||| |||||||||| || |||| |||||||| | |||| |
Sbjct 1237 CTTGGAATCCTGCTTTCTTTCTCATCTCCATCAC-AGGAGACGAAATCCATTA-TCGTTG 1294
Query 1475 CGCCAGAGGA-TCCCATCCGCAGATTTGACGACATGTCCTTACAGTGTCTCACCACATCA 1533
|||| | || ||| ||||| ||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1295 CGCCCCAAGAATCC-ATCCGTAGATTCAACGACATGTTCTTACAGTGTCTCGCCACATCA 1353
Query 1534 GTGCAGACTGTATCCGAGTGGACGGTACACGAGGCAAGTCTTGTCATGGATGGTCACACA 1593
| |||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1354 GCGCAGACTGTATCTGAGTGGACGGTGCACGAGACAAGCCTTGTCATGGATGGTCACACA 1413
Query 1594 CTGACTGAAATCTCTGCCTTTTGCTACAGACCAGAGAATTCGACAAAGAGTGCAGAATTT 1653
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1414 CTGACTGAAATCTCTGCCTTTTGCTACAGACCAGAGAATTTGACAAAGAGTGTAGAATAT 1473
Query 1654 GTTGCATTGCTCGGACACATCTCAGTCAAAGATCATGTTCAAAACCAGCAGAACCCCGAG 1713
|||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||
Sbjct 1474 GTTGCATTGCTCGGACACATCTCAATCAAAGATCATGTTCAGTACCAGCAGAAATCCGAG 1533
Query 1714 ATTTTACTTCCAGCTTCATCGTGGGTCATCGAGGCTCATAACGTAGAGCTTGTACCAGGC 1773
| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1534 ACTTTACTTCCAGCTTCATCGTGGGTCATCAAGGCTGATAACGTAGAGCTTGTACCAGGA 1593
Query 1774 AATTCCAGTTCCAAGATCCTCAGGGTTAAGCTAGAATGGAGACAGAAAGACCTCGAAGAT 1833
|||||| |||||||||||||||||| |||||| ||||||||||| ||| |||| ||||||
Sbjct 1594 AATTCCGGTTCCAAGATCCTCAGGGCTAAGCTCGAATGGAGACAAAAACACCTAGAAGAT 1653
Query 1834 TCCGCATTCACAAGGTACAATGTATATGCAGAGAATGTGAAGTCGACTGATCTAAGACCG 1893
|| | || ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1654 TCTGTGCTCCCAAGGTACAATGTATATGCAGAGAATGTGAACTCCACTGATCTAAGACCG 1713
Query 1894 AGGAAGGTTCTAGAGAAACCGAAAAGCGAGACAGTGCTCCTTGGAATTGCTCACGTACCA 1953
||||| |||||||||||||||| ||| ||||||||| |||||||| ||| ||||||||||
Sbjct 1714 AGGAAAGTTCTAGAGAAACCGAGAAGTGAGACAGTGTTCCTTGGAGTTGTTCACGTACCA 1773
Query 1954 GCCTATTATGTAGCGGAACTGGTGGTAGAATCAGACGTGAAGGCAGTCCGTTTCATGGTT 2013
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1774 GCCTATTATGTAGCGGAACTGGTGGTAGAATCAGACGTGAAAGCAGTCCGTTTCGTGGTT 1833
Query 2014 CAAGCTTGTGGCGAAGATGCTTCATTGGGGAAGCTGGATGAAGCTCTTAACCTTCTTGTG 2073
||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1834 CAAGCATGTGCCGAAGATGGTTCATTAGGGAAGCTGGATGAAGCTCTTAACCTTCTTGTG 1893
Query 2074 GACCTAGAAGGTCTCTCAG-TAAAT 2097
|| ||||||||| ||||| |||||
Sbjct 1894 GAACTAGAAGGTATCTCATCTAAAT 1918
Score = 577 bits (312), Expect = 1e-163
Identities = 369/397 (93%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 1 ATGCCCAAATCCAACGATGACGACGTTGCACAATCTGAAGCCGTTCCGTTGCTTGATCTT 60
|||||||||||||| || | ||| || ||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGCCCAAATCCAATGACGGCGATGTCGCAGAATCTGAAGCCGTTCCGTTGCTCGATCTT 60
Query 61 GTCAAGCCATCGTTACCTATATCTTTCCCGATCAAAGCTCTTCAAGACCTGAAATCTCGC 120
| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 GCCAAGCCGTCGTTACCTATATCTTTCCCGATCAAATCTCTTCAAGATCTGAAATCTCGT 120
Query 121 TCTTACTTTGATTCCTTTCATTTCCAGTTTAATCGCTCCACAGTACCTTTCCGCCGAAAC 180
|||||||| | ||||||||| |||||||||||||||||||| |||||| |||| ||| ||
Sbjct 121 TCTTACTTCGTTTCCTTTCACTTCCAGTTTAATCGCTCCACCGTACCTCTCCGGCGAGAC 180
Query 181 TCCGACTG-TTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTA 239
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCGA-TGACTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTA 239
Query 240 TGTAGATGACAAGTGGGTACAAGGGTGTGAAAACGAAGCCGGATTTGCGATTTGGCATTG 299
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 TGTAGATGACAAGTGGGTACAAGGATGTGAAAACGACGCCGGATTTGCGATTTGGCATTG 299
Query 300 GTACTTGATGGACATTTTTGTTTACTTCTCTCATTCTCTGGTCACTATTCCTCCTCCTTG 359
||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 300 GTATTTGATGGACATTTTTGTTTACTTCTCTCATTCTTTGGTCACTCTTCCTCCTCCTTG 359
Query 360 CTGGACCAATACTGCTCATAGGCATGGCGTTAAAGTA 396
|||||| ||||||||||||||||||||||||||||||
Sbjct 360 CTGGACTAATACTGCTCATAGGCATGGCGTTAAAGTA 396
> Ahg487338 jgi|Araly1|487338|fgenesh2_kg.6__472__AT5G05460.1
Length=2223
Score = 1020 bits (552), Expect = 0.0
Identities = 955/1147 (83%), Gaps = 37/1147 (3%)
Strand=Plus/Plus
Query 64 AAGCCATCGTTACCTATATCTTTCCCGATCAAAGCTCTTCAAGACCTGAAATCTCGCTCT 123
|||||||| |||||| || ||||| |||||| ||||||||||| |||| |||||||||
Sbjct 129 AAGCCATCAACACCTATCTCCTTCCCTATCAAAACTCTTCAAGACTTGAAGTCTCGCTCT 188
Query 124 TACTTTGATTCCTTTCATT-TCCAGTTTAATCGCTCCACAGTACCTTTCCGCCGAAAC-T 181
||||| ||||||||||||| ||| ||||| |||||| | |||||| |||| || ||| |
Sbjct 189 TACTTCGATTCCTTTCATTATCC-CTTTAACCGCTCCTCCGTACCTCTCCGTCGGAACAT 247
Query 182 CCGACTG-TTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTAT 240
| | | || ||| |||| | ||| | || || || ||||||||||||||||| ||
Sbjct 248 -TGGC-GCCTTGCCGGATCGATCTAGGCTCTTGGTTTGTCATGACATGAAAGGAGGTTAC 305
Query 241 GTAGATGACAAGTGGGTACAAGGGTGTGAAAACGAA-GCCGGATT-TGCGATTTGGCATT 298
|| ||||| |||||||||||||| |||| |||| || ||||| || || || ||| |||
Sbjct 306 GTTGATGATAAGTGGGTACAAGGATGTGGAAAC-AACGCCGG-TTACGCCATCTGGGATT 363
Query 299 GGTACTTGATGGACATTTTTGTTTACTTCTCTCATTCTCTGGTCACTATTCCTCCTCCTT 358
|||| ||||||||| |||| ||||||||||| || || || || ||| | ||||||||||
Sbjct 364 GGTATTTGATGGACGTTTTCGTTTACTTCTCACACTCGCTTGTGACTCTGCCTCCTCCTT 423
Query 359 GCTGGACCAATACTGCTCATAGGCATGGCGTTAAAGTATTGGGGACTTTCATCACAGAAT 418
| |||||||| |||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 424 GTTGGACCAACACTGCTCACAGACATGGCGTCAAGGTATTGGGGACTTTCATCACAGAAT 483
Query 419 GGGATGAAGGAAAAGCTACCTGCAAAGAGATGCTT-GCCACAAAGGAGTCTGCTCAAATG 477
|||| |||||||||||||||||||||||| || || || |||||||||||||| || |||
Sbjct 484 GGGACGAAGGAAAAGCTACCTGCAAAGAGTTG-TTGGCGACAAAGGAGTCTGCACAGATG 542
Query 478 TATGCAGAGCGTTTGGCTGAACTTGCTACTGCTCTAGGCTTTGATGGGTGGCTGATAAAT 537
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 543 TATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGGTGGCTGATAAAT 602
Query 538 ATAGAGAATGATA-TAGATGAGGAACAGATTCCAAATATGAAGGAATTCGTCAGCCATCT 596
|||||||||| || ||||||| | || ||||||||| ||| || || || ||||||||
Sbjct 603 ATAGAGAATG-TAATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAAGCCATCT 661
Query 597 aaaaaaaGTCTTGCATTTATC-GACACCTGG-GGCTTTAGTCATATGGTATGACAGTGTC 654
|| ||||||| |||||| ||| | |||||| || |||||| |||||||| || ||||||
Sbjct 662 AACAAAAGTCATGCATTCATCTGT-ACCTGGAGG-TTTAGTTATATGGTACGATAGTGTC 719
Query 655 ACTGTTCG-TGGTAATCTT-CAGTGGCAAGATCAATTGACTGAGCTGAACAAACCTTTCT 712
|| ||| | |||| | ||| | ||||||||||| || |||||| ||| ||||||||||
Sbjct 720 ACGGTT-GATGGTCAGCTTGCT-TGGCAAGATCAGTTAACTGAGAAGAATAAACCTTTCT 777
Query 713 TTGACT-TATGCGATGGAATATTCATGAACTACACATGGAAGGAGAGCTACCC-AAACCT 770
|||| | ||||||||||||||||||||||||| ||||||||||||| |||||| ||| |
Sbjct 778 TTGA-TATATGCGATGGAATATTCATGAACTATACATGGAAGGAGAACTACCCCAAAGC- 835
Query 771 ATCAGCTGAAGTTGCTGGGGACAGAAAAT-TCGATGTCTACATGGGAATTGATGTTTTTG 829
|||||||||| || | || || ||||| | | ||||||||||||||||| ||||||||||
Sbjct 836 ATCAGCTGAAATTTCCGGTGATAGAAAGTAT-GATGTCTACATGGGAATAGATGTTTTTG 894
Query 830 GGCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTGGATTTGCTGAAGA 889
| ||||| ||| ||||||||| |||||||||| ||||| ||| || |||||||||||||
Sbjct 895 GTCGGGGAACTTATGGTGGTGGACAATGGACTGCAAATGTTGCCCTTGATTTGCTGAAGA 954
Query 890 GAAACAATGTGTCAGCTGCCATATTTGCTCCTGGATGGGTTTATGAGACTGCA-CAACCC 948
| | ||||| |||||||| |||||||||||||||||||| || || || | | |||||
Sbjct 955 GCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTCTACGAAACCG-AGCAACCA 1013
Query 949 CCCAATTTTCACACAGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGTCATGGGGAATA 1008
|| ||||| |||| || || |||||||||||||||||||| |||||||||||||| |||
Sbjct 1014 CCGGATTTTTACACGGCACAAAATAAATGGTGGTCACTTGTTGAGAAGTCATGGGGTATA 1073
Query 1009 GTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCAGATTTCAATCAGGGCTTTGGTTAC 1068
|| |||| ||||| |||||| | ||||| ||||||||||| ||||||||| | |||| |
Sbjct 1074 GTTCAAAAATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCTAGGTT-C 1132
Query 1069 -CATGTTTCACTCGAAGGTCGCCAACTGTCAGATTCTCCATGGTACAACATTTCTTGCCA 1127
||| | || || | |||||| || | ||||| |||| |||||||||||||| |||||
Sbjct 1133 TCATATCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATTTCATGCCA 1192
Query 1128 AAGTCTTCAGCCTCTCCTAGAATTCAATGAAG-ACAACAA---AGATATCATCCAGGTCA 1183
|||||| ||||| | ||||||||||||||||| | || || ||||||||| || ||||
Sbjct 1193 AAGTCTGCAGCCACACCTAGAATTCAATGAAGGA-AAGAATTCAGATATCATGCAAGTCA 1251
Query 1184 CTGTTGA 1190
|||||||
Sbjct 1252 CTGTTGA 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5