BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11060.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904278 jgi|Araly1|904278|Al_scaffold_0003_1406 852 0.0
> Ahg904278 jgi|Araly1|904278|Al_scaffold_0003_1406
Length=1020
Score = 852 bits (461), Expect = 0.0
Identities = 582/637 (91%), Gaps = 21/637 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAGATGAAGAGTAAAAGAGATGTGATTGTATGCAGAGGATTATGGTATGCAATG 60
|||||||| || ||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 334 ATGGAGAACATAAAGAGTAAAAGAGATGTTATTGTATGCAGAGGAATATGGTATGCCATG 393
Query 61 ACTCTACTCTC-CATCTTTGGCCTCTCCATATCCCTCAACCTTCTCTTGCCATCTGGTGA 119
||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 394 ACTCTACTCTCGC-TCTTTGGCCTCTCCATATCCCTCAACCTTCTCTGGCCACCTGGTGA 452
Query 120 CTC--C-T---CGTCTCGGTTCCTAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGC 173
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CTCGTCATCGACGTCTCGGTTCCTAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGC 512
Query 174 AGTGACGATACTCAGATATCT-TTTCTTCACCGATCCTCCCTCCACTTGCTACACGGAGT 232
||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 513 AGTGACGCTACTCAGATATCTCTTT-TTCACCCATCCTCCCTCCACTTGCTACACGGAGT 571
Query 233 TTACTACACCTAAAAAGAGGATTCCTCAGGTTGTGTTCTCGGAGCTTGCCTTGTACCTAG 292
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTACTGCACCTAAAGAGAGGATTCCTCAGGTTGTGTTCTCGGAGCTTGCCTTGTACCTAG 631
Query 293 TGTTCATAACGCCGCTAGCT-TGTTCACTCGTGTTTACGGAGAACGTGTTGTCTTTGTTA 351
|||||| |||||||||| | ||||||||| |||||||| | ||||||||||||||||||
Sbjct 632 TGTTCACAACGCCGCTA-CAATGTTCACTCTTGTTTACGAACAACGTGTTGTCTTTGTTA 690
Query 352 TACATATCGTTATTCACCATATCGTTGTTCACCGGAGGGATAGGGCTTATTCAGCTAACG 411
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
Sbjct 691 TACATATCGTTATTCATCATATCATTGTTCACCGGAGGGATAGGGCTTATTCAGCTATCA 750
Query 412 GAAAAGTGTAGGATGGAGACGAGACATGCTTTGATCACGCTTTTCTTCGGTTGGTTGTTT 471
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 751 GAAAAGTGTAGGATGGAGACGAGACATGCTTTGATCACACTTTTCTTCGGTTGGTTGTTT 810
Query 472 GGTCTTTTTGGCATCTTTGAAGCTTTATACT-CTAAGGACTATAACGGAGTGGCATTGTT 530
||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct 811 GGTCTTTTTGGCATCTTTGAAGCTTTATACTGC-AACGACTATAACGGAGTGGCGTTGTT 869
Query 531 CGTTACCAGTCTTTATGTATTGGTTTCCTTTGGGCTCTTTGCGTATAATTTCCCCTCGGA 590
| || ||| |||||||||| || ||||| ||||||||||| |||||||||||||| | |
Sbjct 870 CCTTGCCAATCTTTATGTAATGTTTTCCCTTGGGCTCTTTTTGTATAATTTCCCCTTG-A 928
Query 591 GAAGGAGAAGGACTTGCATACTTTGACTGCATCTCCC 627
|||||| ||||||||||||| |||| ||||||
Sbjct 929 GAAGGA------CTTGCATACTTTGCCTGCTTCTCCC 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5