BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11060.1 Length=642 Score E Sequences producing significant alignments: (Bits) Value Ahg904278 jgi|Araly1|904278|Al_scaffold_0003_1406 852 0.0 > Ahg904278 jgi|Araly1|904278|Al_scaffold_0003_1406 Length=1020 Score = 852 bits (461), Expect = 0.0 Identities = 582/637 (91%), Gaps = 21/637 (3%) Strand=Plus/Plus Query 1 ATGGAGAAGATGAAGAGTAAAAGAGATGTGATTGTATGCAGAGGATTATGGTATGCAATG 60 |||||||| || ||||||||||||||||| ||||||||||||||| |||||||||| ||| Sbjct 334 ATGGAGAACATAAAGAGTAAAAGAGATGTTATTGTATGCAGAGGAATATGGTATGCCATG 393 Query 61 ACTCTACTCTC-CATCTTTGGCCTCTCCATATCCCTCAACCTTCTCTTGCCATCTGGTGA 119 ||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 394 ACTCTACTCTCGC-TCTTTGGCCTCTCCATATCCCTCAACCTTCTCTGGCCACCTGGTGA 452 Query 120 CTC--C-T---CGTCTCGGTTCCTAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGC 173 ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 CTCGTCATCGACGTCTCGGTTCCTAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGC 512 Query 174 AGTGACGATACTCAGATATCT-TTTCTTCACCGATCCTCCCTCCACTTGCTACACGGAGT 232 ||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||| Sbjct 513 AGTGACGCTACTCAGATATCTCTTT-TTCACCCATCCTCCCTCCACTTGCTACACGGAGT 571 Query 233 TTACTACACCTAAAAAGAGGATTCCTCAGGTTGTGTTCTCGGAGCTTGCCTTGTACCTAG 292 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 572 TTACTGCACCTAAAGAGAGGATTCCTCAGGTTGTGTTCTCGGAGCTTGCCTTGTACCTAG 631 Query 293 TGTTCATAACGCCGCTAGCT-TGTTCACTCGTGTTTACGGAGAACGTGTTGTCTTTGTTA 351 |||||| |||||||||| | ||||||||| |||||||| | |||||||||||||||||| Sbjct 632 TGTTCACAACGCCGCTA-CAATGTTCACTCTTGTTTACGAACAACGTGTTGTCTTTGTTA 690 Query 352 TACATATCGTTATTCACCATATCGTTGTTCACCGGAGGGATAGGGCTTATTCAGCTAACG 411 |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | Sbjct 691 TACATATCGTTATTCATCATATCATTGTTCACCGGAGGGATAGGGCTTATTCAGCTATCA 750 Query 412 GAAAAGTGTAGGATGGAGACGAGACATGCTTTGATCACGCTTTTCTTCGGTTGGTTGTTT 471 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 751 GAAAAGTGTAGGATGGAGACGAGACATGCTTTGATCACACTTTTCTTCGGTTGGTTGTTT 810 Query 472 GGTCTTTTTGGCATCTTTGAAGCTTTATACT-CTAAGGACTATAACGGAGTGGCATTGTT 530 ||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||| Sbjct 811 GGTCTTTTTGGCATCTTTGAAGCTTTATACTGC-AACGACTATAACGGAGTGGCGTTGTT 869 Query 531 CGTTACCAGTCTTTATGTATTGGTTTCCTTTGGGCTCTTTGCGTATAATTTCCCCTCGGA 590 | || ||| |||||||||| || ||||| ||||||||||| |||||||||||||| | | Sbjct 870 CCTTGCCAATCTTTATGTAATGTTTTCCCTTGGGCTCTTTTTGTATAATTTCCCCTTG-A 928 Query 591 GAAGGAGAAGGACTTGCATACTTTGACTGCATCTCCC 627 |||||| ||||||||||||| |||| |||||| Sbjct 929 GAAGGA------CTTGCATACTTTGCCTGCTTCTCCC 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23521839789 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5