BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11070.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928820 jgi|Araly1|928820|scaffold_301277.1 2390 0.0
Ahg487345 jgi|Araly1|487345|fgenesh2_kg.6__479__AT5G05520.1 1066 0.0
> Ahg928820 jgi|Araly1|928820|scaffold_301277.1
Length=1589
Score = 2390 bits (1294), Expect = 0.0
Identities = 1499/1597 (94%), Gaps = 17/1597 (1%)
Strand=Plus/Plus
Query 33 CTATCTCTCTGTCTCATGGCGAATCCGACGGAGAACCTCGACGCGAATCCACAAATCCGA 92
||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 7 CTATCTCTCTGTCTCATGGCGAATCCGACGGAGAATCTCGACGCGAATCTACCAATCCGA 66
Query 93 GAACCAGAAGCTGAAGAAGAAGTTGAAGAACTGAACGGATACGAAGGTGACGATGGAGGA 152
||||||||||||||| |||||||||||||||| |||||| ||||| || | |||||
Sbjct 67 GAACCAGAAGCTGAAAAAGAAGTTGAAGAACTTAACGGAGACGAA---GA--A--GAGGA 119
Query 153 GAAGATGACGATGGAGAAGACGATGACACCGAGTCGAAATCTCAAACGCGCGAAAGCGGA 212
| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 G--GATTACGAAGGAGAAGACGATGACACCGAGTCGAAATCTCAAACGCGCGAAGGCGGA 177
Query 213 TCCAGTGTAGACAGAATCAAGGCGGAATCGCTATTCCGTCGGATGCGAGCTGCTCCTGTG 272
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCC------GACAGAATCAAGGCGGAATCGCTATTCCGTCGGATGCGAGCTGCTCCTGTG 231
Query 273 CCGGTGCGTGTTCACGACGTGATTATCGGTGGAAACGAGAAGACTAAGGACCATATCATT 332
||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 232 CCGGTTCGTGTTCACGACGTGATTGTCAGTGGGAACGAGAAGACTAAGGACCATATCATT 291
Query 333 GAAGCGGAAGTGGATGCTGTGAGAGAGGCGACCACGTTGCAAGAGCTTCTCGAAGCATCT 392
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 292 GAGGCAGAAGTGGATGCTGTGAGAGAGGCGACCACGTTGCAGGAGCTTCTCGAAGCTTCT 351
Query 393 AGGGTTGCCAATTCGAATCTCCGTGCGTTAGATATCTTTGATTCCGTCAACATTACGCTT 452
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 352 AGGGTTGCCTATTCGAATCTCCGAGCGTTAGATATCTTTGATTCCGTCAACATTACGCTC 411
Query 453 GATTCTGGTCCTCCTGAGCTTCCTGGTACTACCAATGTGGTAATCGACGTCGTCGAGAGC 512
|||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||
Sbjct 412 GATTCTGGTCCTCCTGAGCTTCATGGTACCACCAATGTGGTAATCGAAGTTGTCGAGAGC 471
Query 513 AAAAGCCCTCTCACCGGCCAAATTGGTGCCTACACTAGAGCAGAGGCTAGATCATCAAGC 572
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 472 AAAAGCCCTCTCACTGGCCAAATCGGCGCCTACACTAGAGCAGAGGCTAGATCATCGAGC 531
Query 573 GTTGAAGCATCTTTGAAGTATAAGAACATTTTTGGTTATGGAGATATTTGGGACGGGTCT 632
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTGAAGCATCTTCGAAGTATAAGAACATTTTTGGTTATGGAGATATTTGGGACGGGTCT 591
Query 633 ATAGTTTATGGCTGTGACAACTCTGCTGAGGTTGGTTTGGGGATGTATTTGCCAAGGTTC 692
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 592 ATAGTTTATGGATGTGACAACTCTGCTGAGGTTGGCTTGGGGATGTATTTACCAAGGTTC 651
Query 693 AGAGGA-TTGTCTACTCCTTTTACTTCCCGTCTTTTCCTTTCGACTCAAGACTGGCTTAA 751
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGAGGACTT-TCTACTCCTTTTACTTCCCGTCTTTTCCTTTCGACTCAAGACTGGCTTAA 710
Query 752 GTTTTCATCGTATAAAGAACGATCCCTCGGTCTTTCTCTTGGTCTTTTCTCAAGCAAGTA 811
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 711 GTTTTCATCGTATAAAGAACGATCCCTCGGTCTTTCTCTCGGTCTTCTCTCAAGCAAGTA 770
Query 812 TCACGAGCTGATCTACACGATTGCGTGGCGTAATCTGATCGATCCATCACAAGCTGCTGC 871
|||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||| |
Sbjct 771 TCACGAGCTGGTCTACACGATTGCTTGGCGTAATCTGATAGATCCATCACAAGCCGCTTC 830
Query 872 AGTATCAATAAGGAGACAACTGGGACACAGTCTGCTTTCTGCGTTGAAGTATACTTTTAG 931
| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 831 AAAATCAATAAGGAGGCAACTGGGACACAGTCTGCTTTCTGCATTGAAGTATACTTTTAA 890
Query 932 GTTTGATCAGAGAAACTCAAGCTTGAGGCCAACTAATGGATATGCTTTCATCTCTACATC 991
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 891 ATTTGATCAGAGAAACTCAAACTTGAGGCCAACTAATGGATATGCTTTCATCTCTACTTC 950
Query 992 TCAAATTGGTGGTCTTGCTCCTGATAGCCGAAGCTTACGCTTCCTGAAGCAGGAAGTTGA 1051
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 951 TCAAATTGGTGGTCTTGCTCCTGATAGCCGAAGCCTACGCTTCTTGAAGCAGGAAATTGA 1010
Query 1052 TCTTCGGTATGCTGTTCCGTTTGGATTTTACAATGCTGCTATAAATTTTGGTGTGTCTGG 1111
|||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 1011 TCTTCGATATGCTGTTCCGTTTGGATTTTACAATGCTGCTCTAAACTTTGGCGTGTCTGG 1070
Query 1112 GGGTGTCTCCTTTCCGTGGGGAAGCGGATACCAGAACCGTCCTTCATCTATACCAGAGAG 1171
||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1071 GGGTGTCACCTTTCCGTGGGGAAGCGGATACCAGAACCGCCCTTCCTCTGTACCAGAGAG 1130
Query 1172 ATTCTTCTTGGGTGGCAATTCATCGCCTGTGTGCTCCTTGAGTGGGCCATCTGCGCTGTG 1231
|||||||||||||||||||||||||||||| ||||| ||| |||| ||||| || || ||
Sbjct 1131 ATTCTTCTTGGGTGGCAATTCATCGCCTGTATGCTCTTTGGGTGGACCATCCGCACTATG 1190
Query 1232 GGGATTCAAGACCAGAGGAGTTGGTCCCAGTGAGCCAAAGAGGAAAGGTGATAGTGAACG 1291
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1191 GGGATTCAAGACCAGAGGACTTGGTCCCAACGAGCCAAAGAGGAAAGGTGATAGTGAACG 1250
Query 1292 GGATTTTGTTGGAGGAGATGCGGCAGTGACTGCATTTGCGGATCTCTCATTTGATTTGCC 1351
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1251 GGATTTTGTTGGAGGAGATGCTGCGGTGACTGCATTTGCGGATCTCTCATTTGATTTGCC 1310
Query 1352 AGTGAGATGGTTAAGAGAGAGAGGAATCCACGGTCATGTGTTTGCCTGTGCAGGGAATAT 1411
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1311 AGTGAGATGGTTAAGAGAGAGAGGAATCCACGGGCATGTGTTTGCTTGTGCGGGGAATAT 1370
Query 1412 GGCGAAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGGAGACATT 1471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GGCAAAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGGAGACATT 1430
Query 1472 CAGAACTTCAGTTGGTGCTGGAATCGTCTTACCAACAAGCCTATTCCGTATGGAGCTTAA 1531
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1431 CAGAACTTCAGTTGGTGCTGGAATCGTCTTACCAACTAGTCTATTCCGTATGGAGCTTAA 1490
Query 1532 CTACTGCCACATATTGAAGAAACAGGAACACGATCAAGCGAGATCAGGGGTTTTCTTGAC 1591
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1491 CTACTGCCACATATTGAAGAAACAAGAACACGATCAAGCGAGATCAGGGGTTTTCGTGAC 1550
Query 1592 ATTCTCTGCTTCGTCCTGAGAAATTTTTGCTGAAGAA 1628
||||||||| ||||||||||||| ||| |||||||||
Sbjct 1551 ATTCTCTGCCTCGTCCTGAGAAACTTTAGCTGAAGAA 1587
> Ahg487345 jgi|Araly1|487345|fgenesh2_kg.6__479__AT5G05520.1
Length=1852
Score = 1066 bits (577), Expect = 0.0
Identities = 1299/1634 (79%), Gaps = 104/1634 (6%)
Strand=Plus/Plus
Query 22 TCTCTCAGTTACTATCTCT-CTGTCTCATGGCGAATCCGACGGAG-AACCTCG-ACGCGA 78
|||||||||| || || || || |||||||||||||||||||||| |||| || || |||
Sbjct 37 TCTCTCAGTTGCTTTCCCTCCT-TCTCATGGCGAATCCGACGGAGAAACC-CGAAC-CGA 93
Query 79 ATCC-ACAA-ATCCGAGAACCAGAAG-CTGAAGAAG-AAGTTGAAGAACT-GAACGGATA 133
||| ||| | || | |||| | || || |||| | ||| ||||| || ||| || |
Sbjct 94 TTCCTTCAACA-CCTA-AACCCG-AGCCTAAAGATGAAAG-AGAAGAGCTAGAA--GACA 147
Query 134 CGAA-GGTGACGATGGAGGAGAAGATGACGATGGA-GAAGACGATGACACCGAGT-CGAA 190
|| || | || | || |||||| || || | | || | ||| | | ||| | |||
Sbjct 148 TTAACGGCG--GA-GAAGAAGAAGAGGAAGA-GTATGAGGGCGA--AGA-CGA-TGGGAA 199
Query 191 ATCTCAAACGCGCGAAAGCGGATCCAGTGT-AGACAGAATCAAGGCGGAATCGCTATTCC 249
| ||| || |||| || |||| || | | || || ||||| || || || || ||||
Sbjct 200 ACCTCGAA--CGCG--AGAGGATGCAATCTCGGATAGGATCAAAGCTGAGTCTCTGTTCC 255
Query 250 GTCGGATGCGAGCTGCTCCTGTGC-CGGTGCGTGTTCACGACGTGATTATC-GGTGGAAA 307
|||| |||||||| |||| || | | |||||||||||||||||||| || | |||||
Sbjct 256 GTCGTATGCGAGCAACTCCGGT-CGCTGTGCGTGTTCACGACGTGATCGTCAAG-GGAAA 313
Query 308 CGAGAAGACTAAGGACCATATCATTGAAGCGGAAGTGGATGCTGTGAGAG-AGGCGACCA 366
||||||||||||||| ||| |||| || || || || |||| | |||| | | ||||| |
Sbjct 314 CGAGAAGACTAAGGATCATGTCATCGAGGCTGAGGTTGATGTTTTGAG-GCAAGCGACTA 372
Query 367 CGTTGCAAGAGCTTCTCGAAGCATCTAGGGTTGCCAA-TTCGAATCTCCGTGCG-TTAGA 424
||||||| ||||||||| |||| |||| ||||||||| ||| ||||| | ||| || ||
Sbjct 373 CGTTGCAGGAGCTTCTCAAAGCCTCTAAGGTTGCCAATTTC-AATCTTCAAGCGCTT-GA 430
Query 425 TATCTTTGATTCCGTCAACATTACGCTTGATTCTGGTCCTCCTGAGCTTCCTGGTACTAC 484
|||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 431 TATCTTCGATGCTGTCAAAATTACGCTTGATTCTGGTCCTCCTGAGCTTCCTGGTACCAC 490
Query 485 CAATGTGGTAATCGACGTCGTCGAGAGCAAAAGCCCTCTCACCGGCCAAATTGGTGCCTA 544
||||||||| ||||| || || ||||||||||||||| ||||||||||||| || | |
Sbjct 491 CAATGTGGTCATCGATGTTGTTGAGAGCAAAAGCCCTTTCACCGGCCAAATCGGAACTTT 550
Query 545 CACTAGAGCAGAGGCTAGATCATCAAGCGTTGAAG-CATCTTTGAAGTATAAGAACATTT 603
||||| ||| |||||||||||||||||| |||||| | ||||||||||| ||||||||||
Sbjct 551 CACTAAAGCCGAGGCTAGATCATCAAGCCTTGAAGGC-TCTTTGAAGTACAAGAACATTT 609
Query 604 TTGGTTATGGAGATATTTGGGACGGGTCTATAGTTTATGGCTGTGA-CAACTCTGCTGAG 662
|||||||||||||||| |||||||||||| | | ||||||||||| || |||| |||||
Sbjct 610 TTGGTTATGGAGATATCTGGGACGGGTCTCTTGCCTATGGCTGTGATCA-CTCTACTGAG 668
Query 663 GTTGGTTTGGGGATGTATTTGCCAAGGTTCAGAGGATTGTC-TACTCCTTTTACTTCCCG 721
|| || || |||||||||||||||||||||||||| ||| |||||| ||||| || ||
Sbjct 669 GTCGGCTTAGGGATGTATTTGCCAAGGTTCAGAGGGC-GTCCTACTCCATTTACGTCGCG 727
Query 722 TCTTT-TCCTTTCGACTCAAGACTGGCTTAAGTTTTCATCGTATAAAGAACGATCCCTCG 780
| | || |||| || ||||| ||||||||||| ||||| |||||||||||| | || |
Sbjct 728 GGTATATC-TTTCTACCCAAGATTGGCTTAAGTTCTCATCTTATAAAGAACGAGCTCTTG 786
Query 781 GTCTTTCTCTTGGTCTTTTCTCAAGCAAGTATCACGAGCTGATCTACACGATTGCGTGGC 840
||||||| || || ||| || | ||||||||||| |||||| ||||| ||||| ||||
Sbjct 787 GTCTTTCCCTCGGGCTTATCGCTAGCAAGTATCATGAGCTGGCCTACAATATTGCATGGC 846
Query 841 GTAATC-TGATCGATCCATCACAAGCTG-C-TGCA-GTATCAATAAGGAGACAACTGGGA 896
|||| | |||| || ||||| ||| || | | || | ||||||||||||||| |||||
Sbjct 847 GTAA-CGTGATAGACCCATCGCAAA-TGGCAT-CAAG-ATCAATAAGGAGACAGCTGGGT 902
Query 897 CACAGTCTGCTTTCTGCGT-TGAAGTATACTTTTAGGTTTGATCAGAGAAACTCAAGCTT 955
|| | | || ||||||| | ||||||| ||||| | ||||| |||||||||||| |||
Sbjct 903 CATAATTTGGTTTCTGC-TCTGAAGTACACTTTCAAATTTGACCAGAGAAACTCATCCTT 961
Query 956 GAGGCCAACTA--ATGGATA-TGCTTTCATCTCTACATCTCAAATTGGTGGTCTTGCTCC 1012
||||||||| | | || || | ||||||||||||| |||||||| ||||||||||| ||
Sbjct 962 GAGGCCAAC-ACGAGGG-TACT-CTTTCATCTCTACTTCTCAAATAGGTGGTCTTGCGCC 1018
Query 1013 TGATAGCCGAAG-CTTACGCTTCCTGAAGC-AGGAAGTTGATCTTCGGTATGCTGTTCCG 1070
|||||| |||| || ||||| || || ||||| | || || || |||||||||||
Sbjct 1019 TGATAGTCGAACACTC-CGCTTTTTGC-GCCAGGAAATCGACCTCCGATATGCTGTTCCA 1076
Query 1071 TTTGGATTTTA-CAATGCTGCTATAAATTTTGGTGT-GTCTGGGGGTGTCTCCTTTCCGT 1128
| || ||||| | ||||||| | || |||||||| | ||||||| || | ||||| |
Sbjct 1077 CTCGGGTTTTATCG-TGCTGCTCTGAACTTTGGTGTAG-CTGGGGGAATCACATTTCCAT 1134
Query 1129 GGGGAAGCGGATACCAGAACCGTCCTTCATCTATACCAGAGAGATTCTTCTTGGGTGGCA 1188
||||||||| |||| ||| | |||| | |||||| ||||| |||||||| ||||| |
Sbjct 1135 GGGGAAGCGAATACAAGAGCAAAGCTTCTTGTATACCTGAGAGGTTCTTCTTAGGTGGTA 1194
Query 1189 AT-TCATCGCCTGTGTGCTCCTTGAGTGGGCCATCTGCGCTGTGGGGATTCAAGACCAGA 1247
| | ||| |||||||| || ||| | || ||||||||| | |||||||||||||| ||
Sbjct 1195 ACAT-ATCACCTGTGTGTTCTTTGGGAGGACCATCTGCGTTATGGGGATTCAAGACTAGG 1253
Query 1248 GGAGTTGG-TCCCAGTGAGCCAAAGAGG-AA--A---G--G-TGATAGTG--AAC----- 1290
||| |||| ||| | ||||||| |||| || | | | ||| |||| |||
Sbjct 1254 GGA-TTGGGTCCTAACGAGCCAAGGAGGGAAGTACAAGACGATGAGAGTGGTAACACATA 1312
Query 1291 -G---GG-ATTTTGTTGGAGGAGATGCGGCAGTGACTGCATTTGCGGATCTCTCATTTGA 1345
| || ||||||| ||||| |||| || || ||||||||||| || ||||| |||||
Sbjct 1313 TGAACGGGATTTTGTGGGAGGGGATGTTGCGGTCACTGCATTTGCAGACCTCTCTTTTGA 1372
Query 1346 TTTGCCAGTGAGATGGTTAAGAGAGAGAGGAATCCACGGTCATGTGTTTGCCTGTGCAGG 1405
||| ||| ||| |||||| ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 1373 TTTCCCATTGAAATGGTTCAGAGACAGAGGAATCCATGGTCATGTGTTTGCATGTGCCGG 1432
Query 1406 GAATATGGCG-AAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGG 1464
||||||||| || ||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 1433 TAATATGGCGGAA-TTATCAGAGAACAAGTATAGGAACTTCACTGCTCCAAAGTTCTTGG 1491
Query 1465 AGACATTCAGAA-CTTCAGTTGGTGCTGGAATCGTCTTACCAACAAGCCTATTCCGTATG 1523
|||||||||||| || |||||||||| |||||||| ||||||| || ||||| || |||
Sbjct 1492 AGACATTCAGAAGCT-CAGTTGGTGCAGGAATCGTGGTACCAACTAGTCTATTTCGCATG 1550
Query 1524 GAGCTTAACTACTGCCACATATTGAAGAAACAGGAACACGATCAAGCGAGATCAGGGGTT 1583
||||||||||||||||||||| |||||||||| |||||||||| ||||| ||| || ||
Sbjct 1551 GAGCTTAACTACTGCCACATACTGAAGAAACAAGAACACGATCGAGCGAAATCTGGATTT 1610
Query 1584 TTCTTGACATTCTC 1597
||| ||||||||||
Sbjct 1611 TTCATGACATTCTC 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5