BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11090.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478451 jgi|Araly1|478451|fgenesh2_kg.3__1152__AT3G11090.1         837    0.0  


> Ahg478451 jgi|Araly1|478451|fgenesh2_kg.3__1152__AT3G11090.1
Length=492

 Score =  837 bits (453),  Expect = 0.0
 Identities = 484/498 (97%), Gaps = 6/498 (1%)
 Strand=Plus/Plus

Query  35   ATGAGAGGGCATGAGCCACGATCAAGCTCATCTTGTGCAGCCTGCAAGCTCTTGAAGAGA  94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGAGGGCATGAGCCACGATCAAGCTCATCTTGTGCAGCCTGCAAGCTCTTGAAGAGA  60

Query  95   CGATGCACACCCACTTGCATTTTCGCTCCTTATTTCCGCTCAAGTGACTTGATAACTTTC  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGATGCACACCCACTTGCATTTTCGCTCCTTATTTCCGCTCAAGTGACTTGATAACTTTC  120

Query  155  GCCAAAGTCCATAAAGTCTTTGGAGCCAGCAACGTCAGTAAGCTTCTCGGTGAAGTTCCT  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCAAAGTCCATAAAGTCTTTGGAGCCAGCAACGTCAGTAAGCTTCTCGGTGAAGTTCCT  180

Query  215  GAAGAACAGAGACAAGAAACCGTTAACTCCTTGGCTTATGAAGCTGAGGTTCGTCTCAAG  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GAAGAACAGAGACAAGAAACCGTTAACTCCTTGGCTTATGAAGCTGAGGTTCGTCTCAAG  240

Query  275  GATCCTGTTTACGGTTGCATTGGAGCCATAGCGTCTCTGCAGAAGAAGATGCTCGAGCTT  334
            || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  241  GACCCTGTTTACGGTTGCATAGGAGCCATAGCGTCTCTCCAGAAGAAGATGCTCGAGCTT  300

Query  335  CAACACGATCTAGCTGTTGCTCGCACTCGACTACTTGCCCATTCTGGGGTCAACAACAGC  394
            ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct  301  CAACATGATCTAGCCGTTGCTCGCACTCGACTACTTGCCCATTCTGGGGTCACCAAC--C  358

Query  395  CAAGTGTCCCCTTTGGATGATTCTCCTGAGCTTGCTGCTTTTCTTGATCTTGTACCTTAT  454
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  -AAGTGTCCCCTTTGGATGATTCTCCTGAGCTTGCTGCTTTTCTTGATCTTGTACCTTAT  417

Query  455  AGTGACTTGATGTTGCTTGATGGGTCTACTAATCTTGATGCTTACTTGTATGATCTTGGA  514
            |||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||
Sbjct  418  AGTGACTTGATGTTGCTTGATGGGTCTAGT---CTTGATGCTTACTTGTATGATCTTGGA  474

Query  515  CAGCCTCCTTTTGTATAG  532
            ||||| ||||||||||||
Sbjct  475  CAGCCCCCTTTTGTATAG  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5