BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11100.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928823 jgi|Araly1|928823|scaffold_301280.1 1242 0.0
> Ahg928823 jgi|Araly1|928823|scaffold_301280.1
Length=809
Score = 1242 bits (672), Expect = 0.0
Identities = 767/810 (95%), Gaps = 17/810 (2%)
Strand=Plus/Plus
Query 63 CCTCCTCTCTTTCCCACTCCGAGATGGAGACGACGCCGGAGACTCAGT-C--G----A-- 113
||||||||| | ||| |||||||||||||||||||||||||||||||| | | |
Sbjct 1 CCTCCTCTCCTCCCCCCTCCGAGATGGAGACGACGCCGGAGACTCAGTCCAAGACTCACC 60
Query 114 AGA-C---TC--ACCGTCTACCGGCGGGAAGAGAGGATTGGTGGAGCGAAGACGCTACGG 167
||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGAGCGGGTCTAACCGTCTACCGGCGGGAAGAGAGGATTGGTGGAGCGAAGACGCGACGG 120
Query 168 CGACATTGATCGAAGCTTGGGGAGATCGTTACGTCAATCTCAACCG-GGGAAATCTCCGG 226
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 121 CGACATTGATCGAAGCTTGGGGAGATCGTTACGTCAATCTCAACCGTGGG-AATCTCCGG 179
Query 227 CAAAACGATTGGAAAGAAGTCGCCGACGCCGTCAATTCAAGCCACGGGAATGGCCGGCCA 286
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 180 CAAAACGATTGGAAAGAAGTCGCCGACGCCGTCAATTCTAGCCACGGGAACGGCCGGCCA 239
Query 287 AAGACCGATGTACAGTGCAAAAACCGGATCGATACGTTGAAGAAGAAGTACAAAACTGAA 346
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGACCGACGTGCAGTGCAAAAACCGGATCGATACGTTGAAGAAGAAGTACAAAACTGAA 299
Query 347 AAGGCGAAACCTTTATCGAATTGGTGCTTCTTTGATAGACTCGATTTCTTAATCGGTCCG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGGCGAAACCTTTATCGAATTGGTGCTTCTTTGATAGACTCGATTTCTTAATCGGTCCG 359
Query 407 GTTATGAAGAAATCGTCCGGTGCTGTTGTTAAATCGGCGTTGATGAACCCTAATTTGAAT 466
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 360 GTTATGAAGAAATCGTCCGGCGGAGTTGTTAAATCGGCGTTTATGAACCCTAATTTGAAT 419
Query 467 CCTACTGGATCTAAATCAACTGGTAGCTCTCTcgatgacgatgatgatgatgatgatgac 526
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 420 CCTACTGGATCTAAATCAACTGGAAGCTCTCTTGACGACGATGATGATGATGATGATGAT 479
Query 527 gacgaagaagatgatgatgatgCGGGTGATTGGGGATTTGTGGTGAGGAAGCATCGTAAA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACGAAGAAGATGATGATGATGCGGGTGATTGGGGATTTGTGGTGAGGAAGCATCGTAAA 539
Query 587 GTTGAAGATGTAGATTCGAGTGAAGGATCAGCCTTTAGGGAGCTAGCGAGATCGATTCTG 646
||||||||||||||| ||||||||||||| ||||||||||| | |||||||| ||||||
Sbjct 540 GTTGAAGATGTAGATCCGAGTGAAGGATCGGCCTTTAGGGAATTGGCGAGATCTATTCTG 599
Query 647 AAGTTAGGGGAAGCGTTTGAGAGAATCGAGGGGAAGAAGCAACAGATGATGATTGAATTG 706
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 600 AAGTTAGGGGAAGCGTTTGAAAGAATCGAGGGTAAGAAGCAACAGATGATGATTGAATTG 659
Query 707 GAGAAACAGAGAATGGAAGTTGCAAAGGAGCTTGAGTTACAACGAATGAATATGTTGATG 766
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGAAGCAGAGAATGGAAGTTGCAAAGGAGCTTGAGTTACAACGAATGAATATGTTGATG 719
Query 767 GAGATGCAATTGGAGCTTGAGAAATCTAAACTTGGGAAACGAAGAGCTGCTTCAGGTAAG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGATGCAATTGGAGCTTGAGAAATCTAAACTTGGGAAACGAAGAGCTGCTTCAGGTAAG 779
Query 827 AAGTTGTAGGATTGTAGATTGTGGAGGAGT 856
||||||||||||| ||||||||||||||||
Sbjct 780 AAGTTGTAGGATTATAGATTGTGGAGGAGT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5