BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11110.1

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928824 jgi|Araly1|928824|scaffold_301281.1                        701    0.0  


> Ahg928824 jgi|Araly1|928824|scaffold_301281.1
Length=521

 Score =  701 bits (379),  Expect = 0.0
 Identities = 451/484 (93%), Gaps = 11/484 (2%)
 Strand=Plus/Plus

Query  1    ATGACGTCATCTTCACCGTCTCCACAAGCCTCGATGCTTTTGTACTGGCACGAGAATCAA  60
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct  21   ATGACGTCATCTTCACCGTCTCCACAAGCCTCGATGATTTTGTACTGGCACGAGAACCAA  80

Query  61   TACGACGACCGGAACTTCCAGATTCATGGCCGGACACTCTTCTTCGCCTTAGCTTTATTC  120
            ||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct  81   TACGACGACCGCAACTTCCAGATTCATGGCCGGACACTCTTCTTCGCCATGGCTCTATTC  140

Query  121  TCCGTCGTGCTCTTCTTCGCACTACTCACTCTCTACATCCACCGGAACTGCCTCCCCCGG  180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  TCCGTCGTCCTCTTCTTCGCACTACTCACTCTCTACATCCACCGGAACTGCCTCCCCCGG  200

Query  181  GATTCTATCAATCTCCACGCGTCCTCTCCCGATCGACTCACGCGTTGCCG-TAGCGGAGG  239
            |||||| | |||||||||||  ||||| | |||| || ||| |||||  | |||||||||
Sbjct  201  GATTCTCTTAATCTCCACGCACCCTCTTCTGATCAACACACACGTTG-TGCTAGCGGAGG  259

Query  240  GCTTGATCCGGCGGA-GATTCGGAGCTTGCCGGTGGTGCTTTGCC-ggagagaaag-ggc  296
            |||||||||||| ||  ||||||||||||||||||||||||| || |||||| ||| |||
Sbjct  260  GCTTGATCCGGC-GACTATTCGGAGCTTGCCGGTGGTGCTTT-CCAGGAGAG-AAGCGGC  316

Query  297  ---ggaggaggaggaggagaaggagTGTTGTATATGTCTAGGTGGTTTCGAAGAAGGAGA  353
               ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  317  GGAGGAGGAGGAGGAGGAGAAGGAGTGTTGTATATGTCTAGGTGGTTTTGAAGAAGGAGA  376

Query  354  GAAGATGAAAGTGCTTCCTCCGTGTAGCCATTGTTACCACTGCGAATGTGTGGATCGGTG  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  377  GAAGATGAAAGTGCTTCCTCCGTGTAGCCATTGTTACCACTGCGAATGTGTGGATAGGTG  436

Query  414  GCTTAAAACCGAGTCGAGTTGTCCGCTCTGCCGAGTCTCCATCCGTGTCGACTCGTCAAG  473
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  437  GCTTAAGACCGAGTCGAGTTGTCCGCTCTGCCGAGTCTCCATCCGAGTCGACTCGTCAAG  496

Query  474  CTAA  477
            ||||
Sbjct  497  CTAA  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17284481817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5