BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11150.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478455 jgi|Araly1|478455|fgenesh2_kg.3__1156__AT3G11150.1 1683 0.0
> Ahg478455 jgi|Araly1|478455|fgenesh2_kg.3__1156__AT3G11150.1
Length=1262
Score = 1683 bits (911), Expect = 0.0
Identities = 1148/1256 (91%), Gaps = 42/1256 (3%)
Strand=Plus/Plus
Query 20 CGCTCTGCCTCTTCCAAAGTCACATCCATCTTTCAATGGCTTTCTCTTCAGCTCACCTCA 79
||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 1 CGCTCAGCCTCTTCCAAAGTCACATCCATCTTCCAATGGCTTCCTCTTCAGCACACCTCA 60
Query 80 ACCACCACCAACCTTTGATCAAGCACGGTGGAGCCACGGCGGCGCCTCCTCCGACCCCGT 139
|||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 61 GCCACCACCAACCTTCGACCAAGCACGGTGGAGCCACGGCGGCGCCTCCGCCGACTCCGT 120
Query 140 CATGCTCACATCTCAACACCACCAGCAAATCGGAGACAGCAGTTGACGCTCTCTCCAGTC 199
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 121 CATGCTCACATCTCAACACCACCAGCAAATCGGAGACAGCAGTCGACGCTCTCACCAGCC 180
Query 200 TTTTCCACCGTCTCCCTCCTTTGCTTTCACTCCCCAA---CCG----T-CG-CTC--CA- 247
||||||||||||||||||||||||||||||||||||| ||| | || ||| ||
Sbjct 181 TTTTCCACCGTCTCCCTCCTTTGCTTTCACTCCCCAACCGCCGCTTCTCCGACTCTGCAT 240
Query 248 --T-C--C-CTTCTCTTCCGATGGTATCTCTCTCCGCCGGAGATAGAC-TTGAATGGGAC 300
| | | ||||||||||| ||||||||||||||||||||||||||| | | ||||||
Sbjct 241 CCTCCATCGCTTCTCTTCCGTTGGTATCTCTCTCCGCCGGAGATAGACGTAG-CTGGGAC 299
Query 301 GATCTTATCT---CCGCCGTGACTGATTTCGGCTATTTCCAACTCATTAACGATGACTCC 357
|||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 300 GATCTTATCTCCGCCGCCGTGACTGATTTAGGCTATTTCCAACTCACTAACGATGACTCC 359
Query 358 GATATTCTTTTCCCTCCTGGGATCGCTGAAGCAGCCGAGTCTGACTCACTCTCGCTCTTA 417
|||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATACTGTTTTCCCTCATGGGCTCGCTGAAGCAGCCGAGTCTGACTCACTCTCGCTCTTA 419
Query 418 GAGCTCAGTGAAGAGAAGAA-GGAATCATCGTTTCCGAAGAAATGGCCGCTAGGCTACGA 476
||||||||||||||||| || ||||| || |||||||||| |||||||| ||||||||
Sbjct 420 GAGCTCAGTGAAGAGAA-AATAGAATCGTCATTTCCGAAGACCTGGCCGCTGGGCTACGA 478
Query 477 AGCCGATGCTGAAACGCCATCGTTTTGCCTTGACGCCGACTGTTCAACCGACTCGAGCGA 536
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 479 AGCGGATGCTGAAACGCCATCGTTTTGCCTTGACGCCGACTGTTCAACCGAGTCTAGCGA 538
Query 537 GTTAAATCTGAGTTCGCTCCGTGAGTTCACTCGGACTCTAGAGAAAGTTGGACTGAAGAC 596
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 539 GTTGAATCTGAGTTCGCTCCGCGAGTTCACTCGGACTCTGGAGAAAGTTGGACTGAAGAC 598
Query 597 GGTAGAGATGCTGGCGAATGCACTTGGGTTTGGATATGATTCA--ACCCGGTTTAATACT 654
||||||||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct 599 AGTAGAGATGCTGGCGAATGCACTCGGATTTGGATATGA--CATGACCCGGTTTAATACT 656
Query 655 CTGATGTGGGTTAACCAAGGTGTTCCTGATGATGAACCGGAGGTAACCAACGGATTTTAT 714
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 CTAATGTGGGTTAACCAAGGTGTTCCTGATGATGAACCGGAGATAACCAACGGATTTTAT 716
Query 715 CCTTTTGTTGTTTGTTTACAGTATCAGATAAGGGAACAGAAGTATTGTTTGCTAACCGAG 774
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 CCTTTTGTTGTCTGTTTACAGTATCAGATAAGGGAACAGAGGTATTGTTTGCTAACCGAG 776
Query 775 TCTGGTTGGGTGTCCGTTTTACCCCGAGTTGACTCGGTTCTTGTGACGTTGGGTGACATT 834
|||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||
Sbjct 777 TCTGGTTGGGTGTCCGTTTTGCCTCGAGTTGACTCGGTTCTGGTGACGTTAGGTGACATT 836
Query 835 GCTCAGGTTTGGAGAAATGGAGAGGTCAAAAGAGTGAAATATCGACCAGTGTTGTGTTCA 894
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 837 GCTCAGGTTTGGAGAAATGGAGAGGTCAAAAGAGTGAAATATCGACCGGTGTTGTCTTCA 896
Query 895 GGACAAAAAGATGGTCC-AGTAAAGTGTGTAACAATGACATTGATGCTTACACTTCCCAT 953
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGACAAAACGATGGTCCCAA-AAAGTGTGTAACAATGACATTGATGCTTACACTTCCCAT 955
Query 954 GGACAGTATGGTTTCATCATTGAAGGATATGATCAGTGACGGCGACAaagaagaagagta 1013
|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 956 GGACAGTATGGTTTCACCATTGAAAGATATGATCAGTGATGGCGACAAAGAAGAAGAGTA 1015
Query 1014 tgcagaggaggaggaagaagatggaggagcaagaagtgatgagagaaggGCATTTAGGCC 1073
||||||||||||||| |||||||||||||||||||||||||| | || |||||||||| |
Sbjct 1016 TGCAGAGGAGGAGGAGGAAGATGGAGGAGCAAGAAGTGATGATAAAAAGGCATTTAGGTC 1075
Query 1074 TTTTAGTTTCAAGGAGTACGCATGGAGAGTGTACCAAGAACGTCTCTTCTTCAGGGATCC 1133
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTTTCGTTTCGAGGAATACGCATGGAGAGTGTACCAAGAACGTCTCTTCTTCAGGGATCC 1135
Query 1134 ACTTGACAGATACAGAATCAAATCTTTA-AAAGATTGACGAACCGATGTTTGATTTGTTT 1192
||| |||||||||||||||||||||| | ||||||||| |||| |||||||| ||| |||
Sbjct 1136 ACTGGACAGATACAGAATCAAATCTT-AGAAAGATTGATGAACTGATGTTTGGTTTATTT 1194
Query 1193 GTTTCTTTCTTGGGTTGAATT----GGTACTATAGTTCTTGTTGTTACt-tttttt 1243
||||| | |||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 1195 GTTTC---CG-GGGTTGAATTATTTGGTACTAGAGTTCTTGTTGTTACTATTTTTT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5