BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11160.1

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928829 jgi|Araly1|928829|scaffold_301286.1                       73.1    3e-12


> Ahg928829 jgi|Araly1|928829|scaffold_301286.1
Length=317

 Score = 73.1 bits (39),  Expect = 3e-12
 Identities = 43/45 (96%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  102  CGATCATGCCACCGAACAACAATCTGAGATCCGTAATCGCTCAGT  146
            |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  16   CGATCATGGCACCGAACAACAATCTGAGATCCGTAATCGCGCAGT  60



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26266689813


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5