BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11180.2 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg928831 jgi|Araly1|928831|scaffold_301288.1 1720 0.0 > Ahg928831 jgi|Araly1|928831|scaffold_301288.1 Length=1160 Score = 1720 bits (931), Expect = 0.0 Identities = 1046/1101 (95%), Gaps = 10/1101 (1%) Strand=Plus/Plus Query 104 AAGAAGTCAAAATAGACAACATGCACATGAGCGACCAAGACAAGAACAAGATCGAAATCA 163 ||||||||||||||||| | | | |||||||||||| |||||||||||||||||| || Sbjct 1 AAGAAGTCAAAATAGAC-A-A---A-ATGAGCGACCAAAACAAGAACAAGATCGAAACCA 54 Query 164 AGAACAAGAGTGGCCTCGGCGAAAAGTGGCCAGAACCCATCGTCCGAGTCCAATCTCTAG 223 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55 AGAACAAGAATGGCCTCGGCGAAAAGTGGCCAGAACCCATCGTCCGAGTCCAATCTCTAG 114 Query 224 CCGAG-AGCAACCTCACTAGTCTCCCTGACCGTTACATCAAGCCGCCGTCTCAACGCCCT 282 | ||| || |||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 115 CAGAGAAG-AACCTCACTACCCTCCCCGACCGTTACATCAAGCCGCCATCTCAACGCCCT 173 Query 283 CAAACCACCATCATCGACCACCAACCGGAAGTAGCTGACATAAATATACCGATCATAGAC 342 |||||||| | |||| ||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct 174 CAAACCACTACCATCAACCACGAACCGGAAGCAGCTGCCATAAATATACCGATCATAGAC 233 Query 343 CTAGACAGTCTATTCTCTGGCAATGAAGACGACAAGAAGAGGATATCCGAGGCATGCCGT 402 |||||||| || ||||| |||||||||||||||| |||||| ||||| |||||||||||| Sbjct 234 CTAGACAGCCTCTTCTCCGGCAATGAAGACGACATGAAGAGAATATCGGAGGCATGCCGT 293 Query 403 GAATGGGGATTCTTCCAGGTAATCAACCATGGCGTGAAGCCGGAGCTGATGGACGCAGCT 462 |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct 294 GAATGGGGATTCTTTCAGGTGATCAACCATGGGGTGAAACCGGAGCTGATGGACGCAGCT 353 Query 463 AGAGAAACTTGGAAGAGCTTCTTTAATTTGCCTGTTGAAGCCAAAGAAGTTTACTCAAAC 522 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 354 AGAGAAACTTGGAAAAGCTTCTTTAATTTGCCGGTTGAAGCCAAAGAAGTTTACTCAAAC 413 Query 523 TCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGGGTGTGGAAAAAGGAGCCATTCTT 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGGGTGTGGAAAAAGGAGCCATTCTT 473 Query 583 GATTGGAATGATTATTACTATCTCCATTTTCTTCCTCTTGCCTTGAAGGATTTCAACAAA 642 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 474 GATTGGAATGATTATTACTATCTCCATTTTCTTCCTCTTTCCTTGAAGGATTTCAACAAA 533 Query 643 TGGCCTTCTTTACCTTCCAACATTAGAGAAATGAATGATGAGTACGGTAAGGAACTAGTG 702 |||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||| Sbjct 534 TGGCCTTCTTTACCTTCCAACATTAGAGAAGTGATTGATGAGTACGGCAAAGAACTAGTG 593 Query 703 AAGCTAGGTGGGAGACTAATGACGATCTTATCGTCAAATTTGGGGCTAAGAGCAGAACAA 762 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 594 AAGCTAGGTGGGAGACTAATGACGATCTTATCGTCAAATTTGGGGCTAAGAGAAGAACAA 653 Query 763 CTTCAAGAAGCATTTGGTGGAGAAGACGTTGGTGCATGTTTGAGGGTTAATTATTACCCA 822 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 654 CTTCAAGAAGCATTTGGTGGAGAAGACATTGGTGCATGTTTGAGGGTTAATTATTACCCA 713 Query 823 AAGTGCCCTCAACCGGAGCTTGCCCTCGGCCTCTCCCCTCATTCTGATCCCGGCGGCATG 882 || |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 714 AAATGCCCTAAACCGGAACTTGCCCTCGGCCTCTCCCCTCATTCCGATCCCGGCGGCATG 773 Query 883 ACCATCCTCTTGCCGGACGATCAAGTCGTCGGCCTTCAGGTCCGTCACGGTGACACGTGG 942 ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| Sbjct 774 ACCATCCTCTTGCCGGATGATCAAGTCGTCGGCCTTCAAGTCCGTCACGATGACACGTGG 833 Query 943 ATCACTGTCAATCCTCTCCGCCACGCTTTTATCGTCAATATCGGCGATCAAATTCAGATA 1002 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 834 ATCACCGTCAATCCTCTCCGCCATGCTTTTATCGTCAATATCGGCGATCAAATTCAGATA 893 Query 1003 CTAAGCAATTCGAAATACAAGAGCGTGGAACATCGAGTGATAGTGAATTCGGAAAAAGAA 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 CTAAGCAATTCGAAATACAAGAGCGTGGAACATCGAGTGATAGTGAATTCGGAAAAAGAA 953 Query 1063 AGGGTTTCACTAGCATTCTTCTATAACCCTAAGAGTGACATTCCGATCCAACCAATGCAA 1122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 AGGGTTTCACTAGCATTCTTCTATAACCCTAAGAGTGACATTCCGATCCAACCAATGCAA 1013 Query 1123 CAACTTGTCACCTCTACGATGCCTCCCTTG-TATCCTCCCATGACCTTTGATCAATATAG 1181 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 1014 CAACTTGTCACCTCTACGATGCCTCC-TTCATATCCTCCCATGACCTTTGATCAGTATAG 1072 Query 1182 ACTCTTCATTAGAACGCAAGG 1202 |||||| |||||||||||||| Sbjct 1073 ACTCTTTATTAGAACGCAAGG 1093 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5