BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11180.2
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928831 jgi|Araly1|928831|scaffold_301288.1 1720 0.0
> Ahg928831 jgi|Araly1|928831|scaffold_301288.1
Length=1160
Score = 1720 bits (931), Expect = 0.0
Identities = 1046/1101 (95%), Gaps = 10/1101 (1%)
Strand=Plus/Plus
Query 104 AAGAAGTCAAAATAGACAACATGCACATGAGCGACCAAGACAAGAACAAGATCGAAATCA 163
||||||||||||||||| | | | |||||||||||| |||||||||||||||||| ||
Sbjct 1 AAGAAGTCAAAATAGAC-A-A---A-ATGAGCGACCAAAACAAGAACAAGATCGAAACCA 54
Query 164 AGAACAAGAGTGGCCTCGGCGAAAAGTGGCCAGAACCCATCGTCCGAGTCCAATCTCTAG 223
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 AGAACAAGAATGGCCTCGGCGAAAAGTGGCCAGAACCCATCGTCCGAGTCCAATCTCTAG 114
Query 224 CCGAG-AGCAACCTCACTAGTCTCCCTGACCGTTACATCAAGCCGCCGTCTCAACGCCCT 282
| ||| || |||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 115 CAGAGAAG-AACCTCACTACCCTCCCCGACCGTTACATCAAGCCGCCATCTCAACGCCCT 173
Query 283 CAAACCACCATCATCGACCACCAACCGGAAGTAGCTGACATAAATATACCGATCATAGAC 342
|||||||| | |||| ||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 174 CAAACCACTACCATCAACCACGAACCGGAAGCAGCTGCCATAAATATACCGATCATAGAC 233
Query 343 CTAGACAGTCTATTCTCTGGCAATGAAGACGACAAGAAGAGGATATCCGAGGCATGCCGT 402
|||||||| || ||||| |||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 234 CTAGACAGCCTCTTCTCCGGCAATGAAGACGACATGAAGAGAATATCGGAGGCATGCCGT 293
Query 403 GAATGGGGATTCTTCCAGGTAATCAACCATGGCGTGAAGCCGGAGCTGATGGACGCAGCT 462
|||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 294 GAATGGGGATTCTTTCAGGTGATCAACCATGGGGTGAAACCGGAGCTGATGGACGCAGCT 353
Query 463 AGAGAAACTTGGAAGAGCTTCTTTAATTTGCCTGTTGAAGCCAAAGAAGTTTACTCAAAC 522
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 354 AGAGAAACTTGGAAAAGCTTCTTTAATTTGCCGGTTGAAGCCAAAGAAGTTTACTCAAAC 413
Query 523 TCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGGGTGTGGAAAAAGGAGCCATTCTT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGGGTGTGGAAAAAGGAGCCATTCTT 473
Query 583 GATTGGAATGATTATTACTATCTCCATTTTCTTCCTCTTGCCTTGAAGGATTTCAACAAA 642
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 GATTGGAATGATTATTACTATCTCCATTTTCTTCCTCTTTCCTTGAAGGATTTCAACAAA 533
Query 643 TGGCCTTCTTTACCTTCCAACATTAGAGAAATGAATGATGAGTACGGTAAGGAACTAGTG 702
|||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||
Sbjct 534 TGGCCTTCTTTACCTTCCAACATTAGAGAAGTGATTGATGAGTACGGCAAAGAACTAGTG 593
Query 703 AAGCTAGGTGGGAGACTAATGACGATCTTATCGTCAAATTTGGGGCTAAGAGCAGAACAA 762
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 594 AAGCTAGGTGGGAGACTAATGACGATCTTATCGTCAAATTTGGGGCTAAGAGAAGAACAA 653
Query 763 CTTCAAGAAGCATTTGGTGGAGAAGACGTTGGTGCATGTTTGAGGGTTAATTATTACCCA 822
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 654 CTTCAAGAAGCATTTGGTGGAGAAGACATTGGTGCATGTTTGAGGGTTAATTATTACCCA 713
Query 823 AAGTGCCCTCAACCGGAGCTTGCCCTCGGCCTCTCCCCTCATTCTGATCCCGGCGGCATG 882
|| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 AAATGCCCTAAACCGGAACTTGCCCTCGGCCTCTCCCCTCATTCCGATCCCGGCGGCATG 773
Query 883 ACCATCCTCTTGCCGGACGATCAAGTCGTCGGCCTTCAGGTCCGTCACGGTGACACGTGG 942
||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 774 ACCATCCTCTTGCCGGATGATCAAGTCGTCGGCCTTCAAGTCCGTCACGATGACACGTGG 833
Query 943 ATCACTGTCAATCCTCTCCGCCACGCTTTTATCGTCAATATCGGCGATCAAATTCAGATA 1002
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 ATCACCGTCAATCCTCTCCGCCATGCTTTTATCGTCAATATCGGCGATCAAATTCAGATA 893
Query 1003 CTAAGCAATTCGAAATACAAGAGCGTGGAACATCGAGTGATAGTGAATTCGGAAAAAGAA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTAAGCAATTCGAAATACAAGAGCGTGGAACATCGAGTGATAGTGAATTCGGAAAAAGAA 953
Query 1063 AGGGTTTCACTAGCATTCTTCTATAACCCTAAGAGTGACATTCCGATCCAACCAATGCAA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGGGTTTCACTAGCATTCTTCTATAACCCTAAGAGTGACATTCCGATCCAACCAATGCAA 1013
Query 1123 CAACTTGTCACCTCTACGATGCCTCCCTTG-TATCCTCCCATGACCTTTGATCAATATAG 1181
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1014 CAACTTGTCACCTCTACGATGCCTCC-TTCATATCCTCCCATGACCTTTGATCAGTATAG 1072
Query 1182 ACTCTTCATTAGAACGCAAGG 1202
|||||| ||||||||||||||
Sbjct 1073 ACTCTTTATTAGAACGCAAGG 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5