BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11200.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478459 jgi|Araly1|478459|fgenesh2_kg.3__1160__AT3G11200.1 1781 0.0
Ahg487363 jgi|Araly1|487363|fgenesh2_kg.6__497__AT5G05610.2 728 0.0
> Ahg478459 jgi|Araly1|478459|fgenesh2_kg.3__1160__AT3G11200.1
Length=1197
Score = 1781 bits (964), Expect = 0.0
Identities = 1112/1176 (95%), Gaps = 39/1176 (3%)
Strand=Plus/Plus
Query 20 tttttattttctctctctctcttatttttcttctccttcttgttccgtctgcttctctcc 79
||||| ||||||||||||||| || |||| | | |||| ||||||||||||||||||
Sbjct 1 TTTTTCTTTTCTCTCTCTCTC--ATATTTC-T-T-CTTC---TTCCGTCTGCTTCTCTCC 52
Query 80 atctccttccatatctattgttctctctctcttcATGCCCGAACGCATCGGGTCTCAAAA 139
||||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct 53 ATCTCCTTCCA-A-C------TCTCTCTCTCTTCATGCCCGAACGCATCGGGTCTTAAAA 104
Query 140 ACCATTGATACAGACATCGATCCTTGTCAACTAGTACTGATCTATAAATCTTATAAAAAT 199
|||||||||||||||||||||||||||||| || | ||| | ||||||| ||||
Sbjct 105 TCCATTGATACAGACATCGATCCTTGTCAAC---TA--G-TCT-T-GATCTTAT--AAAT 154
Query 200 CTGTAGAGATATGGCCGCCGCAGCCGTTTCCTCTAACCCTCGCACCGTTGAAGAGATCTT 259
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 155 CTGTTGAGATATGGCCGCCGCAGCCGTTTCCTCTAACCCTCGCAACGTTGAAGAGATCTT 214
Query 260 CAAAGATTATTCCGCTCGTCGTGCCGCTCTTCTTCGTGCTCTCACTAAAGATGTTGATGA 319
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 CAAAGATTATAGCGCTCGTCGTGCCGCTCTTCTTCGTGCTCTCACTAAAGATGTTGATGA 274
Query 320 TTTTTACTCTCAATGCGATCCGGAAAAGGAGAATTTGTGTTTGTACGGACACCCTAATGA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TTTTTACTCTCAATGCGATCCGGAAAAGGAGAATTTGTGTTTGTACGGACACCCTAATGA 334
Query 380 GTCATGGGAAGTGAATCTACCAGCAGAGGAAGTGCCTCCGGAGCTACCTGAGCCTGCTCT 439
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 335 GTCATGGGAAGTGAATCTACCAGCAGAGGAAGTTCCTCCTGAGCTACCTGAGCCTGCTCT 394
Query 440 TGGTATCAATTTCGCTAGAGATGGTATGCAGAGGAAAGATTGGCTTTCTCTTGTTGCTGT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TGGTATCAATTTCGCTAGAGATGGTATGCAGAGGAAAGATTGGCTTTCTCTTGTTGCTGT 454
Query 500 TCACAGTGATTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGAGCCCGTCTTAATCGCAA 559
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 455 TCACAGTGATTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGAGCTCGTCTTAATCGCAA 514
Query 560 TGAGAGGAAGCGGTTATTCAGTCTGATCAACGATCTCCCAACTCTCTTCGATGTAGTGAC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TGAGAGGAAGCGGTTATTCAGTCTGATCAACGATCTCCCAACTCTCTTCGATGTAGTGAC 574
Query 620 TGGTAGGAAAGCCATGAAAGACAACAAGCCAAGCTCGGACTCAGGAAGCAAATCCAGAAA 679
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 575 TGGTAGGAAAGCCATGAAAGACAACAAGCCAAGCTCGGATTCCGGAAGCAAATCCAGAAA 634
Query 680 TGGCACTAAGAGATCAATAGACGGGCAGACAAAGAGCTCAACACCGAAACTAATGGAAGA 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TGGCACTAAGAGATCAATAGACGGGCAGACAAAGAGCTCAACACCGAAACTAATGGAAGA 694
Query 740 GAGCTATGAGGAGGA-G--GAAGAAGAAGACGAGCATGGAGACACTCTCTGTGGAAGCTG 796
||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 695 GAGCTATGAGGAGGAAGAAGAAGAAGAAGACGAGCATGGAGACACTCTCTGTGGGAGCTG 754
Query 797 TGGAGGTCATTACACAAATGAGGAGTTCTGGATTTGCTGTGATGTTTGTGAACGTTGGTA 856
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 755 TGGAGGTAATTACACAAATGAGGAGTTCTGGATTTGCTGTGATGTTTGTGAACGCTGGTA 814
Query 857 CCATGGAAAATGCGTCAAGATAACTCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATG 916
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCATGGAAAATGCGTTAAGATAACTCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATG 874
Query 917 CCCGCCTTGCTGTGCAAAGAAAGGAAGACAGTGATGCTGATCAATtgatgatgatgatga 976
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 875 CCCGCCTTGCTGTGCAAAGAAAGGAAGACAGTGATGGTGATGAATTGATGATGATGATGA 934
Query 977 tgatgatCTCTCAGAGAGACTCTGGTTCTCATGTTTTAATCAATATGTTAATCAActttt 1036
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 T------CTCTCAGAGAGACTCTGGTTCTCATGTTTTAATCAATATGTTAATCAACTTTT 988
Query 1037 tttctttt-cttctcttttttt-ctttAACCTTCTTAATTTTAAAGCATACAAAACTCTC 1094
|||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 989 TTTCTTTTTCTTTTCTTTTTTTTCTTTAACCTT-TTAATTTTAAAGCATACAAAACTCTC 1047
Query 1095 TCTTTAGATCTCAAGAAAGGGATTTCAAGAAGTTGAGGGAGAGAGTAGCAAACTGTTTGA 1154
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1048 TCTTTAGATCTCAAGAAAGGGATTTCAAGAAGTTGATAGAGAGAGTAGCAA-CTGTTTGA 1106
Query 1155 ATAATATTATTATTATTCATATTaaaaaaaaaaaaa 1190
|||||||||||||||||||||| ||||||||||||
Sbjct 1107 GTAATATTATTATTATTCATATTTAAAAAAAAAAAA 1142
> Ahg487363 jgi|Araly1|487363|fgenesh2_kg.6__497__AT5G05610.2
Length=1087
Score = 728 bits (394), Expect = 0.0
Identities = 620/727 (85%), Gaps = 23/727 (3%)
Strand=Plus/Plus
Query 231 TCTAACCCTCGCACCGTTGAAGAGATCTTCAAAGATTATT-CCGCTCGTCG-TGCCGCTC 288
||||||||||||||||| |||||||||||||| |||| || || |||||| | ||| |
Sbjct 170 TCTAACCCTCGCACCGTCGAAGAGATCTTCAAGGATT-TTAGCGGTCGTCGCT-CCGGTT 227
Query 289 TTCTTCGTGCTCTCACTAAAGATGTTGATGATTTTTACTCTCAATGCGATCCGGAAAAGG 348
||||||| |||||| | ||||||||| | || |||||| |||||||||||||| ||
Sbjct 228 TTCTTCGAGCTCTCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGG 287
Query 349 AGAATTTGTGTTTGTACGGACACCCTAATGAGTCATGGGAAGTGAATCTACCAGCAGAGG 408
||||| ||||||||||||||||||| |||| | |||||||||||||||| || || ||||
Sbjct 288 AGAATCTGTGTTTGTACGGACACCCAAATGGGACATGGGAAGTGAATCTTCCGGCGGAGG 347
Query 409 AAGTGCCTCCGGAGCTACCTGAGCCTGCTCTTGGTATCAATTTCGCTAGAGATGGTATGC 468
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 348 AAGTGCCTCCGGAGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCAAGAGATGGTATGC 407
Query 469 AGAGGAAAGATTGGCTTTCTCTT-GTTGCTGTTCACAGTGATTGTTGGTTGCTCTCTGTT 527
|| | ||||||||||| ||| || |||||||| |||||||| |||||||| |||||||||
Sbjct 408 AGCGTAAAGATTGGCTCTCT-TTAGTTGCTGTCCACAGTGACTGTTGGTTACTCTCTGTT 466
Query 528 TCTTTCT-ACTTTGGAGCCCGTCTTAATCGCAATGAGAGGAAGCGGTTATTCAGTCTGAT 586
|||| || |||| || || || |||||||||||||||||||| || |||| ||||||||
Sbjct 467 TCTT-CTTACTTCGGCGCTCGCCTTAATCGCAATGAGAGGAAACGCCTATTTAGTCTGAT 525
Query 587 CAACGATCTCCCAACTCTCTTCGATGTAGTGACTGGTAGGAAAGCC-ATGAAAGACAACA 645
||||||||||||||||||||| || |||||||| |||||||| ||| || ||||| || |
Sbjct 526 CAACGATCTCCCAACTCTCTTTGAAGTAGTGACGGGTAGGAA-GCCCATCAAAGATAATA 584
Query 646 AGCCAAGC-TCGGA-CTCAGGAAGCAAATCCAGAAATGGCACTAAGAGATCAATAGACGG 703
| |||||| | ||| ||| ||||||||||||||||| ||| |||||||||||| || ||
Sbjct 585 AACCAAGCAT-GGATCTC-GGAAGCAAATCCAGAAACGGCGTTAAGAGATCAATTGAAGG 642
Query 704 GCAGACAAAGAGCTCAACACCGAAACTAATGGAAGAGAGCTATGAGGAGGAGGAAGAAGA 763
||||||||||||| | | ||||||||||||||||||||||| || || | ||||| ||
Sbjct 643 GCAGACAAAGAGC--A-CGCCGAAACTAATGGAAGAGAGCTACGA--AG-ATGAAGACGA 696
Query 764 AGACGAGCATGGAGACACTCTCTGTGGAAGCTGTGGAGGTCATTACACAAATGAGGAGTT 823
|| | ||||||||||| ||||||||||| |||||||| | |||||||| || |||||
Sbjct 697 TGA-G--CATGGAGACACACTCTGTGGAAGTTGTGGAGGAAACTACACAAACGACGAGTT 753
Query 824 CTGGATTTGCTGTGATGTTTGTGAACGTTGGTACCATGGAAAATGCGTCAAGATAACTCC 883
|||||| || |||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct 754 CTGGATATGTTGTGATGTGTGTGAACGTTGGTACCATGGGAAGTGTGTGAAGATAACACC 813
Query 884 GGCTAAAGCAGAGAGCATCAAGCAGTATAAATGCCCGCCTTGCTGTGCAAAGAAAGGAAG 943
| |||||||||||||||||||| || |||||||| ||||||| | |||||||||||
Sbjct 814 AACCAAAGCAGAGAGCATCAAGCAATACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAG 873
Query 944 ACAGTGA 950
|||||||
Sbjct 874 ACAGTGA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5