BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11210.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478460 jgi|Araly1|478460|fgenesh2_kg.3__1161__AT3G11210.1 1858 0.0
> Ahg478460 jgi|Araly1|478460|fgenesh2_kg.3__1161__AT3G11210.1
Length=1371
Score = 1858 bits (1006), Expect = 0.0
Identities = 1272/1393 (91%), Gaps = 47/1393 (3%)
Strand=Plus/Plus
Query 1 GAGACGTTCATGCATTTAATCTCGCACCTTACGACAAAGAGTGAGAGAGAGGATCGCTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAGACGTTCATGCATTTAATCTCGCACCTTACGACAAAGAGTGAGAGAGAAGATCGCTCA 60
Query 61 GGTTTGTTC-ATCTTCACCGGACGA----TTAGC-TTTTGCGGTGGGAGAAAGAACGGCC 114
||||||||| |||||||||| ||| || | || |||||||||||||||||| |||
Sbjct 61 GGTTTGTTCGTTCTTCACCGGCCGATTTTTTTTCATTCTGCGGTGGGAGAAAGAACTGCC 120
Query 115 TGTCTTCAGCTCTGAAACAGAGGAACAGAGAGGTTAGGAAGGAGACAATGGTTGGACCCG 174
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TGTCTTCAGCTCTGAAACAGAGGAAGAGAGAGGTTAGGAAGGAGACAATGGTTGGACCCT 180
Query 175 CGCGGCCTCAGATCGTTTTGTTTGGATCTTCCATTGTTCAGATGAGCTTTGGCCATGGTG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCGGCCTCAGATCGTTTTGTTTGGATCTTCCATTGTTCAGATGAGCTTTGGCCATGGTG 240
Query 235 GTTGGGGCGCCATTCTTTCCGAGGTCTACGCTCGTAAGGCCGACATCATTCTGCGAGGAT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGGGGCGCCATTCTTTCCGAGGTCTACGCTCGTAAGGCCGACATCATTCTGCGAGGAT 300
Query 295 ATTATGGATGGAACTCTTCTCGTGCTTTGGAAGTTGTCGACCAAGTGTTCCCCAAGGATG 354
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ATTATGGATGGAACTCTTCTCGTGCTTTGGAAGTTGTCGACAAAGTGTTCCCCAAGGATG 360
Query 355 CTGCAGTACAACCTTCTCTGGTCATTGTCTATTTTGGAGGAAACGACTCAATGGCGCCTC 414
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGCAGTACAACCTTCTTTGGTCGTTGTCTATTTTGGAGGAAACGACTCAATGGCGCCTC 420
Query 415 ACTCGTCTGGACTAGGACCTCATGTACCACTTACTGAATATGTTGATAACATGAAGAAGA 474
|| | ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 421 ACCCTTCTGGTCTAGGACCTCACGTACCACTTACTGAATACGTTGATAACATGAAGAAGA 480
Query 475 TCGCTCTTCATCTTCAGAGCCTTTCAGACTTCACCCGAATCATATTTCTTAGTTCTCCTC 534
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 481 TCGCTCTTCATCTTCAGAGCCTTTCAGACTCCACCCGTATCATATTTCTTAGTTGTCCTC 540
Query 535 CAGTGGATGAGGCTAAAGTTCGCCAGAACCAAAGCCCATACTTGAGCGAGGTAATCCGCA 594
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 CAGTGGACGAGGCCAAAGTTCGTCAGAACCAAAGCCCATACTTGAGCGAGGTAATTCGCA 600
Query 595 CAAACGACCTCTGCAAGACTTATTCAGATGCTTGTGTAGAGCTGTGCCAAGAACTCGGCC 654
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 601 CAAACGAGCTCTGCAAGACTTATTCAGATGCTTGTGTGGAGTTGTGCCAAGAACTCGGCC 660
Query 655 TAGAAGTAGTTGATCTCTTCTCTACTTTTCAGAAAGCAGATGACTGGAAAACTGTTTGCT 714
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 TAGAAGTAGTTGATCTCTTCTCTACTTTTCAAAAAGCAGATGACTGGAAAACTGTTTGCT 720
Query 715 TCACAGACGGGATTCATTTGTCAGCACAAGGAAGCAAAATAGTAGCGGGAGAGATACTAA 774
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 721 TCACAGACGGGATTCATTTGTCAGCACAAGGAAGCAAACTAGTGGCGGCAGAGATACTAA 780
Query 775 GAGTGGTTAAAGAAGCGGAATGGCATCCATCACTTCACTGGAAATCAATGCCAACAGAAT 834
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 781 GAGTGGTTAAAGAAGCAGAATGGAATCCATCACTTCACTGGAAATCAATGCCAACCGAAT 840
Query 835 TCGCAGATGACTCTCCTTATGATCTTGTATCAGCAGATGGCAAACAGACAGTAAATTCTT 894
|||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 841 TCGCCGAGGACTCTCCTTATGATCTTGTTTCAGCAGATGGCAAACAAACAGTAAATTCAT 900
Query 895 CAGAATGGACTTATTTCTGGGAAGAACAATGGGACTAAACATTTcaacacacacaacaac 954
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 901 CAGAATGGACTTATTTCTGGGAAGAACAATGGGACTAAACATTTCAACACACA-A-CAAC 958
Query 955 aacaacaaGACCCTATCTTCACATAATTCACTGTCTTAATGTGATAAAGCTTTGCTTTAG 1014
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 959 AACAACATGACCCTATCTTTATATAATTCACTGTCTTAATGTGATAAAGCTTTGCTTTAG 1018
Query 1015 ATTGTT-TACAT---TACAAGTGTCTCTGCTATAATCTGATTCAGTTTCGCTCGAAAAAC 1070
|||||| |||| ||||||||||||||||||||||||||| | || | | |
Sbjct 1019 ATTGTTCTACAGGACTACAAGTGTCTCTGCTATAATCTGATTAAA---CGTT--ACCATT 1073
Query 1071 GTTACCATTTTAAAGTTTATACTTATCTAAATCTTAAATCACAGAAACACACCAAGTTTG 1130
||| |||| || |||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 1074 -TTA--ATTT-AA--TTTATACTTATCTAAAACTTAAATCAAAGAAACACAC-AAGTTTG 1126
Query 1131 TGTTCAAGTAATTTCtttttttCTTGTTTACATTTTAC----AGACATTAACAAATGTCT 1186
||||||||||| ||||||||||||||| ||| |||||| |||||| |||||||||||
Sbjct 1127 TGTTCAAGTAAATTCTTTTTTTCTTGTCTACGTTTTACGTTTAGACATCAACAAATGTCT 1186
Query 1187 -GAAA-CT-CATCACATAA-CACTCCTCCAGACAGGGGTTTAGTGTTTT-G--AAG--G- 1236
|||| | ||| | ||| || ||| | |||||||||||||||||| | || |
Sbjct 1187 TGAAATCGACATGTC-TAAACATTCC-C--GACAGGGGTTTAGTGTTTACGGCAAAATGA 1242
Query 1237 -TAAAATCACAAAGTAACTAAATTTGGGCCGATAACAAAAAAGTCGCTTAGGAGATTGGA 1295
||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1243 CTAAAATCACAAAGTAACTATATTTGGGCCTTTAACAAAAAAAAA----AGGAGATTGGA 1298
Query 1296 CTTATTTGGGCCTAAAACCTAACACTTAAGGGCCCAACTAAAATGCCATTTACCTAAAAA 1355
||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1299 ATTATTTGGGCCGAAGACCTAACACTTAAGGGCCCAAATAAATTGCCATTTACCTAAAAA 1358
Query 1356 GCGACGCATCTTC 1368
| |||||||||||
Sbjct 1359 GTGACGCATCTTC 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5