BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11220.2
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478461 jgi|Araly1|478461|fgenesh2_kg.3__1162__AT3G11220.1 1164 0.0
> Ahg478461 jgi|Araly1|478461|fgenesh2_kg.3__1162__AT3G11220.1
Length=1529
Score = 1164 bits (630), Expect = 0.0
Identities = 728/773 (94%), Gaps = 16/773 (2%)
Strand=Plus/Plus
Query 844 AAACAGCAGTAACATTGCATCTATTGGCCGCATCGCAATCCAGTCTTTTTGCTCTCCCCT 903
||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 770 AAACAGCAGTAACATTGCATCCATTGGTCGCATCGCAATCCAGTCATTCAGCTCTCCCCT 829
Query 904 GTGTGAGTATTCTGAAAAGGAATCAGACATGCTCTCATTCATAAGATTGCTGAAAAGTAT 963
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 830 GTGTGAGTATTCTGATAAGGAATCAGACATGCTCTCGTTCATAAGATTGCTGAAAAGTAT 889
Query 964 GCTTATGGTTTCAAATGCGGTAGCCATTGTTACTTTCCCGCCTTCCCTGCTCTCCCCATC 1023
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 890 GCTTATGGTTTCAAATGCGGTAGCCATTGTTACTTTCCCGCCTTCCTTGCTCTCACCATC 949
Query 1024 TTCCTCTAAAAGACTGCAGCATATGGCAGATACCTTGCTCTCTATCAAAGCAATCCCAGA 1083
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 950 TTCCTCAAAAAGACTGCAGCATATGGCAGATACCTTGCTCTCTATCAAAGCAATTCCAGA 1009
Query 1084 TGGTGACAAGGAATTGGAGAAACTCCTCACTGGCTACAAGGATATAAATGGATTCCTCAA 1143
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 TGGTGACAAGGAGTTGGAGAAACTCCTCACGGGCTACAAGGATATAAATGGATTCCTCAA 1069
Query 1144 CATACACAAGGTTGCTCGTATCAACACACAGGTGCCTGTAATTCTTGAGGCAAAAACCTT 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CATACACAAGGTTGCTCGTATCAACACACAGGTGCCTGTAATTCTTGAGGCAAAAACCTT 1129
Query 1204 CTCAATGAGCTTGAAGAAGAGAAGATTCTTGGCTCTAGAGTGTCTGAATCAAGCCCCTGT 1263
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CTCAATGAGCCTGAAGAAGAGAAGATTCTTGGCTCTAGAGTGTCTGAATCAAGCCCCTGT 1189
Query 1264 AGACGGGTCCAGTGGAACATCGTATGGCACATCTGGTAGCTGCTCATCCAAATCCGGAGC 1323
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AGACGGGTCCAGTGGAACATCATATGGCACATCTGGTAGCTGCTCATCCAAATCCGGAGC 1249
Query 1324 ACTAGATTTTTGAGTTGCTGAGTTAGTCTTTCTTTTCTTCTTCTTAGtttttttttttCC 1383
||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1250 ACTCGATTTTTGAGTTGTTGAGTTAGTCTTTCTTTTCTTCTT---AGTTTTTTTTTTTCC 1306
Query 1384 CTCTCCATTGAGTTCTCTAAGTTCACTCACTAACCTGAGCAGTTACATTATTATTATAGT 1443
||||||||||||||||| | |||||||| ||||||||||| ||||||||| | | ||
Sbjct 1307 -TCTCCATTGAGTTCTCTGATTTCACTCAGTAACCTGAGCAATTACATTAT-AG-A--GT 1361
Query 1444 CTTTGGTCTTAAAAACAGTTTT-GACAGCAATATGTTTTGTTTTTAT-AA-TGAAATTTA 1500
||||||||||||||||||||| |||||||||||||||| | | || || | ||||||
Sbjct 1362 GTTTGGTCTTAAAAACAGTTTTTGACAGCAATATGTTTT-TATA-ATGAAATCTAATTTA 1419
Query 1501 TTTCATTTCTGTATTATATATACTCTTATGAAACTATGACCAATGATAGATGCTAGTTAC 1560
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TTTCATTTCTGTATTATATA--CTCTTATGAAACTATGACCAATGATAGATGCTAGTTAC 1477
Query 1561 TAAACGTTCAATGTAATCACTTCAACATGTTCACGTGGTTATTTGTTGAACCA 1613
|||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1478 TAAACGTTGGATGTAATCACTT-AACATGTTCACGTGGTTATTTGTTGAACCA 1529
Score = 1068 bits (578), Expect = 0.0
Identities = 724/790 (92%), Gaps = 27/790 (3%)
Strand=Plus/Plus
Query 13 GGTTCCTTCTGCTTCGTCCAAGTTAGTCGCCGGAGACG---A-CAAAGAGCACCTGAATT 68
||||||||||| ||| |||| ||||||||||||||||| | |||||||||||||||
Sbjct 1 GGTTCCTTCTGGTTCTTCCACGTTAGTCGCCGGAGACGCCAACCAAAGAGCACCTGAA-- 58
Query 69 GGTGCGAGAAAAGATTCCTACTTCTGAGACCATCTTCACAAACGTGTAGCAAAGACGAAG 128
|| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 59 -GTACGAGAAAAGATTCCTACTTCTGAGACCATCTTCATAAACCTGAAGCAAAGACGAAG 117
Query 129 CCTTTGAGTTT-T--CTCTTTCTGTTACTTAGAAAATAGCT-GATTTTGAACCTGGAGCT 184
||||||| ||| | | |||| | || || | | | || ||||||||||||||||||
Sbjct 118 CCTTTGA-TTTGTAGC-CTTT-T-TTGGTTTGGGATTTTCTAGATTTTGAACCTGGAGCT 173
Query 185 GAGTTCCGTGTGTGATTACTTAATTCGGTTATGGCTGCACCAAACGTTCGTAGTAGTAGC 244
||||||||| |||| | || | | ||||||||||| ||||||||||||||||||||
Sbjct 174 GAGTTCCGTATGTG---A-TT-A--C--TTATGGCTGCATCAAACGTTCGTAGTAGTAGC 224
Query 245 AGCTTCTCTCGCAACATATCAGTTGTGTCATCGCCTCAAATTCCTGGTCTCAAAAGTGGT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AGCTTCTCTCGCAACATATCAGTTGTGTCATCGCCTCAAATTCCTGGTCTCAAAAGTGGT 284
Query 305 CCTAATGGCACAGCTTTTATATCGTCAGGGATTCGTGATCTTGACAGGATACTAGGTGGT 364
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 285 CCTAATGGCACAGCTTTTATATCGACTGGGATTCGTGATCTTGACAGGATACTAGGTGGT 344
Query 365 GGGTATCCTTTGGGAAGCTTAGTAATGGTAATGGAAGATCCTGAAGCACCGCATCATATG 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 345 GGGTATCCTTTGGGAAGCTTAGTAATGGTGATGGAAGATCCTGAAGCACCGCATCATATG 404
Query 425 GATCTGTTAAGAACTTACATGTCTCAGGGGCTTGTTAACAATCAACCACTTCTTTATGCT 484
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GATCTGTTAAGAACTTTCATGTCTCAGGGGCTTGTTAACAATCAACCACTTCTTTATGCT 464
Query 485 AGTCCTTCAAAAGATCCAAAAGGGTTTCTTGGTACTTTGCCGCATCCTGCATCATCCAAA 544
|||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 465 AGTCCTTCGAAAGATCCGAGAGGGTTTCTTGGCACTTTGCCGCATCCTGCATCATCCAAA 524
Query 545 GAGGATAAGCCTACTGCGCCCGACCCTGATCAGGGAGAGAGCTTGAGGATTGCTTGGCAG 604
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 525 GAGGATAAGTCTACTGCGCCAGACCCTGATCAGGGAGAGAGCTTGAGGATCGCTTGGCAG 584
Query 605 TATCGGAAGTATTTGGAAAACCAGAAGAATGCTATTGATGATTACTCCAATGACTTTGAT 664
||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||
Sbjct 585 TATCGGAAGTATTTGGAAAGCCAGAAGAATTCTATTGATGATTACTCAAATGACTTTGAT 644
Query 665 ATGAGAAAGCCCTTGGAGAGGCAATTTCTGAGCGGACGGCCCATAGATTGTGTCAGTCTG 724
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 645 ATGAGAAAGCCCTTGGAGAGGCAATTTCTTAGCGGACGGCCGATAGATTGTGTCAGCCTG 704
Query 725 TTAGACTCTTCAGATCTTTCCATTGCTCAGGACCACTG-TGCTACGTTTTTATCAAAATT 783
||||| ||||||||||||||| ||||||| |||||||| | |||| ||||||||||||||
Sbjct 705 TTAGATTCTTCAGATCTTTCCGTTGCTCAAGACCACTGCT-CTACCTTTTTATCAAAATT 763
Query 784 TCCAAGCAAA 793
| |||| |||
Sbjct 764 TTCAAG-AAA 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5