BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11230.2
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478462 jgi|Araly1|478462|fgenesh2_kg.3__1163__AT3G11230.1 961 0.0
> Ahg478462 jgi|Araly1|478462|fgenesh2_kg.3__1163__AT3G11230.1
Length=671
Score = 961 bits (520), Expect = 0.0
Identities = 565/586 (96%), Gaps = 5/586 (1%)
Strand=Plus/Plus
Query 76 CTTTTATAGATTCTGGGAATAGTTTAGAGATGGGGAGATTGTTCTTGGTGAATTTGGAAG 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CTTTTATAGATTCTGGGAATAGTTTAGAGATGGGGAGATTGTTCTTGGTGAATTTGGAAG 146
Query 136 GCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGCTCTCTGTGATGATGTCGTCT 195
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 147 GCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGGTCTCTGTGATGATGTCGTCT 206
Query 196 CTAAGTCTTTTCAGTCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTGT 255
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 207 CTAAGTCTTTTCAATCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTTT 266
Query 256 ATGCTGGCAAGAAAGAAGATAGGATGATGATGACGGGAATGCATACGGTGGTCGATATTT 315
||||||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 267 ATGCTGGGAAGAAGGAAGATAGGATGATGATGACGGGAATGCACACCGTAGTCGATATTT 326
Query 316 ACTGTGTCAAATGCGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATC 375
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 ACTGTGTCAAATGTGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATC 386
Query 376 AAAAGTACAAGGAAGGAAAATCTGTTCTCGAAAGGTACAAGGTCTGGGGTCCAGATGGGA 435
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 387 AAAAGTACAAGGAAGGAAAATCGGTTCTCGAAAGGTACAAGGTTTGGGGTCCAGATGGGA 446
Query 436 ACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGACAGCGATACTGATGATGCTTGAT 495
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 447 ACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGATAGCGATACTGATGATGCTTGAT 506
Query 496 TCTCATCATTCATATCTGATTTGTACATTCCCTCC---AACTCTTTCATTTTTCTTTATT 552
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 507 -CTCATCATTCATATCTGATTTGTACATTCCCTCCTCCAACTCTTTCATCTTTCTTTATT 565
Query 553 CTTTTT-CCTCATTTTGTAAACCATCTATCTTACATTAGAACAGCTTCCGAGACCAATTG 611
|||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 566 CTTTTTTCCTCATTTTGTAAACCATCCATCTTACATTAGAACAGCTTCCAAGATCAATTG 625
Query 612 TTTGGTCATTGCTGCAACTACTTTGGACACATAAGTTAAAGATCTC 657
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TTTGGTCATTGCTGCAACTACTTTGGACACATAAGTTAAAGATCTC 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5