BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11230.2 Length=686 Score E Sequences producing significant alignments: (Bits) Value Ahg478462 jgi|Araly1|478462|fgenesh2_kg.3__1163__AT3G11230.1 961 0.0 > Ahg478462 jgi|Araly1|478462|fgenesh2_kg.3__1163__AT3G11230.1 Length=671 Score = 961 bits (520), Expect = 0.0 Identities = 565/586 (96%), Gaps = 5/586 (1%) Strand=Plus/Plus Query 76 CTTTTATAGATTCTGGGAATAGTTTAGAGATGGGGAGATTGTTCTTGGTGAATTTGGAAG 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 CTTTTATAGATTCTGGGAATAGTTTAGAGATGGGGAGATTGTTCTTGGTGAATTTGGAAG 146 Query 136 GCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGCTCTCTGTGATGATGTCGTCT 195 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 147 GCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGGTCTCTGTGATGATGTCGTCT 206 Query 196 CTAAGTCTTTTCAGTCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTGT 255 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 207 CTAAGTCTTTTCAATCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTTT 266 Query 256 ATGCTGGCAAGAAAGAAGATAGGATGATGATGACGGGAATGCATACGGTGGTCGATATTT 315 ||||||| ||||| ||||||||||||||||||||||||||||| || || |||||||||| Sbjct 267 ATGCTGGGAAGAAGGAAGATAGGATGATGATGACGGGAATGCACACCGTAGTCGATATTT 326 Query 316 ACTGTGTCAAATGCGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATC 375 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 ACTGTGTCAAATGTGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATC 386 Query 376 AAAAGTACAAGGAAGGAAAATCTGTTCTCGAAAGGTACAAGGTCTGGGGTCCAGATGGGA 435 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 387 AAAAGTACAAGGAAGGAAAATCGGTTCTCGAAAGGTACAAGGTTTGGGGTCCAGATGGGA 446 Query 436 ACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGACAGCGATACTGATGATGCTTGAT 495 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 447 ACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGATAGCGATACTGATGATGCTTGAT 506 Query 496 TCTCATCATTCATATCTGATTTGTACATTCCCTCC---AACTCTTTCATTTTTCTTTATT 552 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 507 -CTCATCATTCATATCTGATTTGTACATTCCCTCCTCCAACTCTTTCATCTTTCTTTATT 565 Query 553 CTTTTT-CCTCATTTTGTAAACCATCTATCTTACATTAGAACAGCTTCCGAGACCAATTG 611 |||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||| Sbjct 566 CTTTTTTCCTCATTTTGTAAACCATCCATCTTACATTAGAACAGCTTCCAAGATCAATTG 625 Query 612 TTTGGTCATTGCTGCAACTACTTTGGACACATAAGTTAAAGATCTC 657 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 626 TTTGGTCATTGCTGCAACTACTTTGGACACATAAGTTAAAGATCTC 671 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25199248137 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5