BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11240.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478464 jgi|Araly1|478464|fgenesh2_kg.3__1165__AT3G11240.1 2737 0.0
Ahg487372 jgi|Araly1|487372|fgenesh2_kg.6__506__AT5G05700.1 520 2e-146
> Ahg478464 jgi|Araly1|478464|fgenesh2_kg.3__1165__AT3G11240.1
Length=1897
Score = 2737 bits (1482), Expect = 0.0
Identities = 1736/1858 (93%), Gaps = 19/1858 (1%)
Strand=Plus/Plus
Query 1 ATCGTTGTGGATTCTCTCCGATCATGTCGTCGAAGAAAGCGAAGACGAAGAACGAGGCGA 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCGTTGTGAATTCTCTCCGATCATGTCGTCGAAGAAAGCGAAGACGAAGAACGAGGCAA 60
Query 61 GTAGCAGCCGTGGTGGCATCGGCGGAGAGAGTATAGTCGCTGATTGTGGACGAAATAAAT 120
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTAGTAGCCGTGGTGGCGTCGGCGGAGAGAGTGTAGTCGCTGATTGTGGACGAAATAAAT 120
Query 121 CAACTTGCGGTTACTGTAAATCTTCTACCCGCTTTAGTATTTCTCACGGTTTATGGACAG 180
| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 121 CCACTTGCGGTTACTGTAAATCTTCTACCCGCTCCAGTATCTCTCACGGTTTATGGACAG 180
Query 181 AGAGACTCACCGTTAATGACTATCAAGCTCTTCTTGACAGTGGATGGAGACGATCTGGCT 240
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 181 AGAGACTCACCGTTAATGACTACCAAGCTCTTCTTGACCGTGGATGGAGACGGTCTGGCT 240
Query 241 GCTATCTTTACAAACCTGAGATGGAGAAGACTTGTTGCCCTTCTTATACAATCCGCTTGA 300
||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 241 GCTTTCTTTACAAACCTGAGATGGATAAAACTTGTTGCCCTTCTTATACAATCCGCTTGA 300
Query 301 AAGCAAGTGATTTTGTCCCTTCTAAGGAGCAGCAGCGAGTGCGTAGAAGAATAGAAAGGT 360
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 301 AAGCAAGTGATTTTGTTCCTTCTAAGGAACAGCAGCGAGTGCGTAGAAGACTAGAAAGGT 360
Query 361 TTTTGGATGGTGAACTAGATGCGAAGCCGAGTGAGCAGACAGAAGATCAAGATGTCTCTT 420
| |||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 361 TCTTGGATGGCGAACTAGATGCGAAGCCGAGTGAGCAGACAGAATATCAAGACATTTCTT 420
Query 421 TCTCCCGTGAAGTTTCAGTGTCAGTGAAAAAATCACTTGGAGCTGCTAAAAGAGaaaaaa 480
||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||| |||
Sbjct 421 TCTCCCGCGAAGTTTCAGTGTCTGTGAGAAAATCACTTGGAGCTGCTAAGAGAGAACAAA 480
Query 481 aCAATGAACTGGAACCAATCATGAAAGATTTGTCTGAACAAATTGATAATGCGGTACAAA 540
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 481 ACAATGAAGTGGAACCAATCATGAAACATCTGTCTGAACAAATTGATAATGCGGTACAAA 540
Query 541 AATGCATACAGAGTGGTGAGTTTCCTTCTAATGTTCAGATTCCCAAAGCTTCAGTAAAGA 600
||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 541 GATGCATACAAAGTGGTGAATTTCCTTCTAATATCCAGATTCCCAAAGCTTCAGTAAAGA 600
Query 601 AAGTTTTTTCTGCTAAAAGGAAGAAACTAGCTGAAGGGTCAGAAGACCTCTTATACACCA 660
||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 601 AAGTTCTCTCTGCTAAAAGGAAGAAACTAGCTGAAGGGCCAGAAGAACTCTTATACACCA 660
Query 661 GCAACATTGCTTTTCCAATAGTAGCTGCTATGAAACACACACAGACAT-TGGAGAAAGGC 719
|||||||| |||||||||||||||||||||| |||| |||| | |||| | |||||||||
Sbjct 661 GCAACATTTCTTTTCCAATAGTAGCTGCTATAAAACGCACAGACACATCT-GAGAAAGGC 719
Query 720 AAAAACGTAGAAGAAAACAGATTATCACCAGAGGCTGTTTCTGAGAAGTTGTTAAGTGCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 AAAAACGTAGAAGAAAACAGATTATCACCAGAGGCTGTTTCTGAGAAGTTGTTAATTGCA 779
Query 780 ATGAATAAGGTTGGAGAGTTTACTGGTTTTTCTGTTAAGGTCTCCAAGGGTCATATCAAC 839
||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 ATGAATAAGGTAGAAGAGTTTACTGGTTTTTCTGTTAAGGTCTCCAAGGGCCATATCAAC 839
Query 840 TTCCTTTCAGCTACCCAAGTTACTTCCTCAGATAGAAATGAAGGTGAAGAAAGCCTATGT 899
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||
Sbjct 840 TTCCTTTCAGCTACCGGAGTTTCTTCCTCAGATAGAAATGAAGGTGAAGAAAGCCTCTGT 899
Query 900 GCTACAACAATAAAGTCTTCTTCGAACAAGCTTCATGCAAGAAAGCGGAAGCTGGAGATG 959
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 900 GCTACAACAACAAAGTCTTCTTCGAACAAGCTTCGTGCAAGAAAGCGGAAGCTTGAGATG 959
Query 960 CACTTGAAAAGGTCGAGTTTTGAACCAGAGGAATATGAATTATACAAACGGTATCAAATG 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 960 CACTTGAAAAGGTCGAGTTTTGATCCAGAGGAATATGAATTATACAAACGGTATCAACTC 1019
Query 1020 AAAGTGCATAATGATAAGCCGGAGAGCATCTCAGAAACTTCATACAAACGGTTTTTGGTA 1079
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 AAAGTGCATAATGATAAGCCGGAGAGCATCTCAGAAACTTCATACAAAAGGTTTTTGGTT 1079
Query 1080 GACACTCCGCTCACTGAAGTTCCTTCTTCAGGTTATGATGATGAAGAAAAGATTCCTCTT 1139
||||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||| |
Sbjct 1080 GACACTCCGCTCATTGAAGTTCCGCCTTCAGGTTATGATGACGAAGAAAAGCTTCCTCCT 1139
Query 1140 TGTGGCTTTGGTTCTTTCCATCAACAATACCGAGTTGATGACCGTCTAATTGCTGTTGGG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 TGTGGCTTTGGTTCTTTCCATCAACAATACCGAGTTGATGACCGTCTAATTGCTGTGGGG 1199
Query 1200 GTGATTGATATTCTTCCTAAATGTTTGTCTAGTAAATACCTGTTCTGGGATCCGGATTTC 1259
|||||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||||
Sbjct 1200 GTGATTGACATTCTTCCTAATTGTTTATCGAGTAAATATCTATTCTGGGATCCGGATTTC 1259
Query 1260 GCATCCTTGTCTCTTGGAAACTACTCAGCCCTGCAAGAAATCGATTGGGTAAAACAGAAC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCATCCTTGTCTCTTGGAAACTACTCAGCCCTGCAAGAAATCGATTGGGTAAAACAGAAC 1319
Query 1320 CAAGCTCATTGCTCTACTCTTGAGTATTACTATCTTGGCTATTACATACATTCCTGTAAC 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1320 CAAGCTCATTGCGCTACTCTTGAGTATTACTATCTTGGCTATTACATACATTCATGCAAC 1379
Query 1380 AAGATGAGATATAAAGCAGCCTATCGTCCGTCTGAGCTTCTATGCCCTCTCCGGTACCAA 1439
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1380 AAGATGAGATATAAAGCAGCCTATAGTCCGTCTCAGCTTCTATGCCCTCTCCGGTACCAA 1439
Query 1440 TGGGTTCCATTCGAAGTAGCCAAGCCTCTGCTTGATAAAAAGCCTTATTCCGTCTTGTCC 1499
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1440 TGGGTTCCATTTGAAGTAGCCAAGCCTCTGCTTGATAAAAAGCCATATTCCGTCTTGTCC 1499
Query 1500 AATATCAGTAAGGTTTCT-TCATCATCATCATCACCTCAAGCTTCTGAAACCCTATTGGA 1558
||| ||| ||||| |||| | ||||||||||||||||||||||| ||||||| || || |
Sbjct 1500 AATTTCACTAAGGATTCTCT-ATCATCATCATCACCTCAAGCTTATGAAACCATAGTGCA 1558
Query 1559 ATCTACGAGTGAACATGAAGACATGGAACAAGGGGATACAAATGATGA---TGATGATGA 1615
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 ATCCACGAGGGAACATGAAGACATGGAACAAGGGGATACAAATGATGACGATGATGATGA 1618
Query 1616 AATGTATAACTCTGATGAAGACTCAGACTCAGACTCTAGCAGTAGCAGAAACCGGAGTGA 1675
|||||||||||||||||||||||||||||| | ||||| | | | ||||| |||
Sbjct 1619 AATGTATAACTCTGATGAAGACTCAGACTC----T--AGCAG-A--A-A--CCGGAATGA 1666
Query 1676 CATTACCAATATCCTTATCAGTCTTAATGGACCTCGACTTCGATACAAGGATATACCGCG 1735
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1667 CATTACCAATATCCTTATCAGTCTTGATGGACCTCGACTTCGATACAAGGATATACCACG 1726
Query 1736 GTTCAAGAATCCAGTGGTTCAGAAACAACTCGAATCGATGTTGGTTAGTTACAGGAAAGT 1795
| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 1727 GATCAAGAATCCAGTGGTTCAGAAACAACTGGAATCGATGTTGATTAATTACAGGAAAGT 1786
Query 1796 TGTTGGGGCCGAGCTATCGGAGATAATGGTGTATGAACTCCGGTAACATTAAGCTTAA 1853
||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1787 TGTCGGAACTGAGCTATCGGAGAGAATGGTGTATGAACTCCGGTAACATTAAGCTTAA 1844
> Ahg487372 jgi|Araly1|487372|fgenesh2_kg.6__506__AT5G05700.1
Length=2151
Score = 520 bits (281), Expect = 2e-146
Identities = 622/780 (80%), Gaps = 49/780 (6%)
Strand=Plus/Plus
Query 123 ACTTGCGGTTACTGTAAATCTTCTA-CCCGCTTTAGTATTTCTCACGGTTTATGGACAG- 180
|||||||| ||||||||||| | | | || | |||| ||||||||||||| |||
Sbjct 92 ACTTGCGGCTACTGTAAATC-CCCAGCTCGGTCCAGTACCTCTCACGGTTTAT---CAGC 147
Query 181 AGAGACTC--ACCGTTAATGACTATCAAGCTCTTCTTGACAGTGGATGGAGACGATCTGG 238
|||||||| |||||| ||||||| ||||||||| ||||| | || ||||||||||||||
Sbjct 148 AGAGACTCTTACCGTTTATGACTACCAAGCTCTTATTGACCGAGGCTGGAGACGATCTGG 207
Query 239 CTGC-TATCTTTACAAACCTGAGATGGAGAAGACTTGTTGCCCTTCTTATACAATCCGCT 297
| | ||||||||||||| ||||||||| || |||||||||||| ||||||| ||||| |
Sbjct 208 -TTCTTATCTTTACAAACATGAGATGGATAAAACTTGTTGCCCTCCTTATACGATCCGTT 266
Query 298 TGAAAGCAAGTGATTTTGTCCCTTCTAAGGAGCAGCAGCGAG-TGCGTAGAAGAATAGAA 356
||||||||||||||||||| ||| |||| ||||||||||||| | | ||| ||| |||||
Sbjct 267 TGAAAGCAAGTGATTTTGTTCCTACTAAAGAGCAGCAGCGAGTTTC-TAGGAGACTAGAA 325
Query 357 AGGTTTTTGGATGGTGAACTAGATGCGAAGCCGAGTGAGCAGACAGAAGATCAAGATGTC 416
||||| |||||||| |||| |||| | |||| || | | | || | | | || || |
Sbjct 326 AGGTTCTTGGATGGCAAACTCGATGTGCAGCCCAG-G-G-A-AC---ATA-C-AGGTG-C 375
Query 417 -TCTTTCTCCCGTGAAGTTTCAG-TGTC-AGTGA-AAAAATCACTTGGAGCTGCTAAAAG 472
|||| ||| ||||||||||||| || | || || ||||| ||||||||||||| |||||
Sbjct 376 TTCTTCCTCTCGTGAAGTTTCAGATG-CAAG-GAGAAAAA-CACTTGGAGCTGCCAAAAG 432
Query 473 AGaaaaaaaCAATGAACTGGAACCAATCATGAAAGATTTGTCTGAACAA-ATTGA-TAAT 530
||| |||| ||| || | |||||||| ||| | ||||||||| || || ||||| ||
Sbjct 433 TGAAGAAAAGAATAAAGTTGAACCAATTATGGATGATTTGTCT-AAAAAGATTGACCAA- 490
Query 531 GCGGTACAAAAATGCATACAGAGTGGTGAGTTTCCTTCTAATGTTCAGATTCCCAAAGCT 590
|| || ||| |||||||| |||||| || || |||||| || | ||||| || ||||||
Sbjct 491 GCTGTGCAATTATGCATACGGAGTGGAGAATTCCCTTCTGATATGCAGATACCAAAAGCT 550
Query 591 TCAGTAAAGAAAGTTTTTTCTGCTAAAAGGAAGAAACTAGCTGAAGGGTCAGAAGACCTC 650
||||| ||||| ||||| | ||||| ||| ||||||||||||||||| ||||| | |||
Sbjct 551 TCAGTGAAGAAGGTTTTATGTGCTAGAAGAAAGAAACTAGCTGAAGGAACAGAACAACTC 610
Query 651 TTATACACCAGCAACATTGCTTTTCCAATAGTAGCTGCTATGAAACACACACAGACAT-T 709
||||||||||||||||||||||||||||||| |||||| || |||| ||| |||| || |
Sbjct 611 TTATACACCAGCAACATTGCTTTTCCAATAGCAGCTGCAATAAAACGCACCCAGAAATCT 670
Query 710 GGAGAAAGGC---A-AAA-ACGT--AGAAGAAAACAGATTATCACCAGAGGCTGTTTCTG 762
| ||||||| | ||| | || ||||| ||||||||||||||| || || |||| |
Sbjct 671 G-AGAAAGGGGGGATAAATA-GTGCAGAAGGAAACAGATTATCACCTGAAACTATTTCGG 728
Query 763 AGAAGTTGTTAAGTGCAATGA-ATAAGGTTGGAGAGTTT-ACTGGTTTTTCTGTTAAGGT 820
||| |||||| ||||| || | ||||||| || || | | || | | ||| |||| ||
Sbjct 729 AGATGTTGTTGAGTGCGAT-ACATAAGGTGGGGGAAACTCA-TGATATGTCTATTAAAGT 786
Query 821 CTCCAAGGGTCATATCAACTTCCTTTCAGCTACCCAAG-TTACTTCCTCAGATAGAAATG 879
|| ||||| |||||||| |||||||||||| || ||| || ||| ||| |||||| |||
Sbjct 787 CTGTAAGGGCCATATCAATTTCCTTTCAGCTGCCAAAGATT-CTTTCTCTGATAGAGATG 845
Score = 436 bits (236), Expect = 2e-121
Identities = 547/692 (79%), Gaps = 41/692 (6%)
Strand=Plus/Plus
Query 932 TCATGCAAGAAAGCGGAAGCTGGAGATGCACTTGAAAAGGTCGAGTTTTGAACCAGAGGA 991
||| |||| |||||| ||||||||||| || ||||||||||| |||||||| || || ||
Sbjct 931 TCAGGCAATAAAGCGAAAGCTGGAGATACATTTGAAAAGGTCTAGTTTTGATCCTGAAGA 990
Query 992 ATATGAATTATACAAACGGTATCAAATGAAAGTGCATAATGATAAGCCGGAGAGCATC-T 1050
| |||| ||||||||||||||||| | |||||||| ||||||||||| |||||| | |
Sbjct 991 ACATGAGTTATACAAACGGTATCAGCTAAAAGTGCACAATGATAAGCC--AGAGCA-CGT 1047
Query 1051 --CAGAAACTTCATACA-AACGGTTTTTGGTAGACACTCCGCTCACT-GAAGTTCCTTCT 1106
|||||| ||| |||| || |||||||||| ||| |||| | | | || |||| ||
Sbjct 1048 AGCAGAAAGTTCTTACAGAA-GGTTTTTGGTCGACTCTCC-TTTAATAGACGTTCAACCT 1105
Query 1107 TCAGGTTATGATGATGAAGAAAAGATTCCTCTTTGTGGCTTTGGTTCTTTCCATCAACAA 1166
||| | | |||| |||||| |||| | ||||||||| || |||||||| ||||||
Sbjct 1106 TCA-G----G-TGAT---GAAAAGGTTCCGCCTTGTGGCTTCGGCTCTTTCCACCAACAA 1156
Query 1167 TACCGAGTTGATGACCGTCTAATTGCTGTTGGGG-TGATTGATATTCTTCCTAAATGTTT 1225
|| ||||||||| | | |||| ||||| |||| || |||| |||||||||||||||||
Sbjct 1157 TATAGAGTTGATGGGCTTTTAATAGCTGTCGGGGTTG-TTGACATTCTTCCTAAATGTTT 1215
Query 1226 GTCTAGTAAATACCTGTTCTGGGATCCGGA-TTTCGCATCCTTGTCTCT-TGGAAACTAC 1283
||| ||| |||| | ||||||||||| || | | |||| ||| || || ||||| ||
Sbjct 1216 GTCAAGTGTATACTTATTCTGGGATCCAGACTAT-GCATTCTTATCGCTCGGGAAA-TAT 1273
Query 1284 TCAGCCCTGCAAGAAATCGATTGGGTAAAACAGAACCAAGCTCATTGCTCTACTCTTGAG 1343
|| ||| |||||||||| ||||||| | | | ||||||||||| ||| || ||||| ||
Sbjct 1274 TCTGCCATGCAAGAAATTAATTGGGTCATAGAAAACCAAGCTCACTGCCCTTCTCTTCAG 1333
Query 1344 TATTACTATCTTGGCTATTACATACATTCCTGTAACAAGATGAGATATAAAGCAGCCTAT 1403
|||||||| ||||||||||| ||||||||||| | |||||||| |||||||||||||||
Sbjct 1334 TATTACTACCTTGGCTATTATATACATTCCTGCAGGAAGATGAGGTATAAAGCAGCCTAT 1393
Query 1404 CGTCCGTCTGAGCTTCTATGCCCTCTCCGGTACCAATGGGTTCCATTCGAAGTAGCCAAG 1463
|||| |||||||||||||| ||||| || | ||| ||||||||||| ||| |||| | |
Sbjct 1394 TGTCCATCTGAGCTTCTATGTCCTCTTCGTTTCCAGTGGGTTCCATTTGAAATAGCGAGG 1453
Query 1464 CCTCTGCTTGATAAAAAGCCTTAT-TCCGTCTTGTCCAATATCAGTAAGGTTT--CTTCA 1520
||| |||||||||||||||| ||| | | |||||||| ||||| | | ||| | |
Sbjct 1454 CCTATGCTTGATAAAAAGCCATATGT-CATCTTGTCCGATATC-GCCA--TTTCACAGAA 1509
Query 1521 TC-ATCATC-AT-C-ACCTCAAGCTTCTGAAACCCTATTGGAATCTA-C-G--AGTGAAC 1572
|| || || | | | || ||||||||||| ||| |||| | | | | |||||||
Sbjct 1510 TCAATGTTCTTTACTAGCTGGTGCTTCTGAAACTCTAGCGGAA-CCAGCAGCTAGTGAAC 1568
Query 1573 ATGAAGACATGGAACAAGGGGATACAAATGAT 1604
|||||||||||||||||||||| || ||||||
Sbjct 1569 ATGAAGACATGGAACAAGGGGAGACGAATGAT 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5