BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11250.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478465 jgi|Araly1|478465|fgenesh2_kg.3__1166__AT3G11250.1 1570 0.0
Ahg478235 jgi|Araly1|478235|fgenesh2_kg.3__936__AT3G09200.1 1303 0.0
> Ahg478465 jgi|Araly1|478465|fgenesh2_kg.3__1166__AT3G11250.1
Length=1162
Score = 1570 bits (850), Expect = 0.0
Identities = 948/996 (95%), Gaps = 3/996 (0%)
Strand=Plus/Plus
Query 92 CAACAATGGTGAAGGCAACAAAAGCAGAGAAGAAGATAGCGTATGACACAAAACTATGTC 151
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 75 CAACAATGGTGAAGGCAACGAAAGCAGAGAAGAAGATCGCTTATGACACAAAACTATGTC 134
Query 152 AGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGACAACGTCGGATCGACTC 211
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 135 AGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGATAACGTCGGATCTACTC 194
Query 212 AGCTTCAGAACATCAGGAAAGGTCTTCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACA 271
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 195 AGCTTCAGAACATCAGGAAGGGTCTCCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACA 254
Query 272 CTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACTCTGGAAACACTGCAATTTTGA 331
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 255 CTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACACTGGAAACACTGCGATTTTGA 314
Query 332 ATCTGCTTCCCCTCCTTCAGGGAAACGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGG 391
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 315 ATCTCCTTCCTCTCCTTCAGGGAAATGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGG 374
Query 392 AAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTG 434
Query 452 CTCCTATTGATGTGGTTGTTCAACCTGGCAACACTGGTCTTGACCCATCTCAAACATCGT 511
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 435 CTCCAATTGATGTGGTTGTTCAGCCTGGCAACACTGGTCTCGACCCATCTCAAACATCTT 494
Query 512 TCTTCCAGGTGCTTAACATTCCCA-CTAAGATTAACAAGGGTACTGTTGAAATTATCACC 570
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 495 TCTTCCAGGTGCTTAATAT-CCCAACTAAGATTAACAAGGGTACTGTTGAAATTATCACC 553
Query 571 CCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCT 613
Query 631 AAGCTTGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGATAATGGA 690
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 614 AAGCTCGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGACAACGGC 673
Query 691 TCAGTCTTCAGTCCAGAGGTTCTTGATCTTACTGAAGATCAACTTGTTGAAAAGTTTGCT 750
|||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 674 TCAGTCTTTAGCCCAGAGGTTCTTGATCTTACAGAAGATCAACTTGTGGAGAAGTTTGCT 733
Query 751 TCTGGTATCTCTATGGTCACTTCCTTGGCTCTAGCTGTTTCTTACCCTACCCTTGCGGCT 810
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct 734 TCTGGTATCTCCATGGTCACTTCCTTGGCTCTAGCTGTCTCTTACCCCACTCTTGCTGCT 793
Query 811 GCACCGCATATGTTCATCAATGCCTACAAGAATGCTTTAGCTATTGCTGTTGCTACTGAC 870
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 794 GCGCCGCATATGTTCATCAATGCATACAAGAATGCCTTAGCTATTGCTGTTGCCACTGAC 853
Query 871 TACACTTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTAAAGGATCCCAGCAAGTTTGTT 930
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 854 TACACTTTCCCTCAAGCAGAGAAGGTTAAGGAATTCTTAAAGGATCCTAGCAAGTTTGTT 913
Query 931 GTTGCTGCAGCGGCAGTGTCTGCGGATGCAGGTGGTGGTAGTGCTCAAGCTGGAGCTGCA 990
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 914 GTTGCTGCAGCGGCAGTGTCAGCGGATGCAGGTGGCAGTGGTGCTCAAGCTGGAGCTGCT 973
Query 991 GCTAAGGTAGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAGGGTGGTTTCGGT 1050
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GCTAAGGTGGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAGGGTGGTTTCGGT 1033
Query 1051 TTGTTTGACGAAGAGTAGGTTTTGTCTATAAG-GTT 1085
||||| |||||||||||||| ||||||||||| |||
Sbjct 1034 TTGTTCGACGAAGAGTAGGTGTTGTCTATAAGTGTT 1069
Score = 75.0 bits (40), Expect = 1e-12
Identities = 64/74 (86%), Gaps = 8/74 (11%)
Strand=Plus/Plus
Query 4 AAAACCCTAACTTCCTTCATCATCTTTCCC-A-------AACACTCTCCGAAACAGAGAA 55
||||||||| | |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1 AAAACCCTAGCCTCCTTCATCATCTTTCCCAATTTGTCGAACACTCTCCGAAACAGAGAA 60
Query 56 CATTTTGAGTTTTT 69
||||||||||||||
Sbjct 61 CATTTTGAGTTTTT 74
> Ahg478235 jgi|Araly1|478235|fgenesh2_kg.3__936__AT3G09200.1
Length=1171
Score = 1303 bits (705), Expect = 0.0
Identities = 984/1116 (88%), Gaps = 30/1116 (3%)
Strand=Plus/Plus
Query 82 ATCCTTTGAGC-AACAATGGTGAAGGCAACAAAAGCAGAGAAGAAGATAGCGTATGACAC 140
||||||||||| || ||||||||| || || ||||||||||||||||| || || |||||
Sbjct 77 ATCCTTTGAGCGAA-AATGGTGAAAGCTACCAAAGCAGAGAAGAAGATCGCTTACGACAC 135
Query 141 AAAACTATGTCAGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGACAACGT 200
|| ||||||||||||||||| || ||| | |||||||| ||||||||||| || |||||
Sbjct 136 CAAGCTATGTCAGCTTATCGATGAGTACTCCCAGATCTTGGTCGTTGCGGCCGATAACGT 195
Query 201 CGGATCGACTCAGCTTCAGAACATCAGGAAA-GGTCTTCGTGGAGACTCAGTGGTTCTCA 259
||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||| || |
Sbjct 196 CGGATCGACTCAGCTCCAGAACATCA-GAAAGGGTCTTCGTGGAGACTCCGTGGTGCTTA 254
Query 260 TGGGTAAGAACACTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACTCTGGAAACA 319
|||| ||||||||||||||||| ||||||||||| || ||||| |||||| |||||||||
Sbjct 255 TGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACTCTGAGAACACTGGAAACA 314
Query 320 CTGCAATTTTGAATCTGCTTCCCCTCCTTCAGGGAAACGTTGGTTTGATCTTCACTAAAG 379
||||||| | ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 315 CTGCAATCCTCAATCTGCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAG 374
Query 380 GTGATCTCAAGGAAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTG 439
|||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 375 GTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTG 434
Query 440 TGGGTTTAGTTGCTCCTATTGATGTGGTTGTTCAACCTGGCAACACTGGTCTTGACCCAT 499
||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 435 TGGGTTTGGTTGCTCCAATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCAT 494
Query 500 CTCAAACATCGTTCTTCCAGGTGCTTAACATTCCC-ACTAAGATTAACAAGGGTACTGTT 558
| || ||||| ||||||||||| ||||||| |||| || |||||||||||||| || ||
Sbjct 495 CCCAGACATCTTTCTTCCAGGTTCTTAACA-TCCCAACCAAGATTAACAAGGGGACCGTC 553
Query 559 GAAATTATCACCCCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCT 618
||||| |||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 554 GAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGGTCGGATCTTCTGAGGCT 613
Query 619 GCCCTTCTAGCTAAGCTTGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTT 678
||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| ||
Sbjct 614 GCCCTTCTAGCCAAGCTTGGCATCAGGCCTTTCTCATATGGTCTTGTTGTCCAGTCTGTG 673
Query 679 TATGATAATGGATCAGTCTTCAGTCCAGAGGTTCTTGATCTTACTGAAGATCAACTTGTT 738
||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 674 TATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTACAGAAGACCAACTTGTT 733
Query 739 GAAAAGTTTGCTTCTGGTATCTCTATGGTCACTTCCTTGGCTCTAGCTGTTTCTTACCCT 798
|| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||
Sbjct 734 GAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTCTTGCTATTTCTTATCCT 793
Query 799 ACCCTTGCGGCTGCACCGCATATGTTCATCAATGCCTACAAGAATGCTTTAGCTATTGCT 858
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 794 ACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGAATGCCTTAGCTATTGCT 853
Query 859 GTTGCTACTGACTACACTTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTAAAGGATCCC 918
||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 854 GTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTGAAGGATCCA 913
Query 919 AGCAAGTTTGTTGTTGCTGCAGCGGCAGTGTCTGCGGATGCAGGTGGTGGTAGTGCTCAA 978
|| ||||||| ||||||||||| || |||||||| ||||||||||||||| ||| |
Sbjct 914 AGTAAGTTTGCTGTTGCTGCAGTAGCCGTGTCTGCTGATGCAGGTGGTGGTGGTGGT--- 970
Query 979 GCTGGAGCTGCAGCTAAGGTAGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAG 1038
||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 971 GCTCAAGCTGCTGCTAAGGTAGAGGAGAAGAAGGAAGAGTCAGACGAAGAAGACTATGAG 1030
Query 1039 GGTGGTTTCGGTTTGTTTGACGAAGAGTAGGTTTTGTCTAT-AAGGTTTTACCttttttt 1097
|||||||| |||||||| || ||||||||| |||||||||| ||||| ||||||||||
Sbjct 1031 GGTGGTTTTGGTTTGTTCGATGAAGAGTAGATTTTGTCTATTAAGGTCTTACCTTTTT-- 1088
Query 1098 GTGGTGGCTTATAGTTATAATCTAAGTGTTGCTTCGTTTGTAGTAAGGCTG-ATCTCAAA 1156
|| |||| || | |||| |||||||||||||| ||||| | || |||||||
Sbjct 1089 GTCGTGG---AT--T-ATAA-----GTGTTGCTTCGTTTTTAGTATGT-TGGATCTCAA- 1135
Query 1157 TGTTT-TTGGTTTCAAGACAATTCAGATTTTATGTT 1191
| ||| ||||||| | |||||||||||| |||||
Sbjct 1136 T-TTTCTTGGTTTTG-GCCAATTCAGATTT-ATGTT 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5