BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11260.1 Length=750 Score E Sequences producing significant alignments: (Bits) Value Ahg478466 jgi|Araly1|478466|fgenesh2_kg.3__1167__AT3G11260.1 872 0.0 Ahg349845 jgi|Araly1|349845|fgenesh1_pg.C_scaffold_6000438 178 5e-44 Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1 76.8 2e-13 > Ahg478466 jgi|Araly1|478466|fgenesh2_kg.3__1167__AT3G11260.1 Length=663 Score = 872 bits (472), Expect = 0.0 Identities = 561/602 (93%), Gaps = 14/602 (2%) Strand=Plus/Plus Query 5 AAACAGTTGAGGACTTTACATCTGAACATGTCTTTCTCCGTGAAAGGTCGAAGCTTACGT 64 |||||||| |||| |||| ||||||| |||||||||||| |||||||||||||||||||| Sbjct 1 AAACAGTTTAGGAGTTTATATCTGAAAATGTCTTTCTCCATGAAAGGTCGAAGCTTACGT 60 Query 65 GGCAACAATAAC------GGAGGA---ACGGGGACGAAGTGCGGGAGATGGAATCCAACG 115 |||||||| ||| |||||| |||||||| |||||||||||||||||||| ||| Sbjct 61 GGCAACAACAACGGAGGAGGAGGAGGGACGGGGACAAAGTGCGGGAGATGGAATCCTACG 120 Query 116 GTGGAGCAGTTGAAGATATTGACTGATCTGTTTCGAGCCGGTCTTAGAACTCCAACAACT 175 ||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||| Sbjct 121 GTGGAGCAGTTGAAGATATTGACTGATCTATTTCGAGCTGGTCTTAGAACTCCGACCACT 180 Query 176 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAAT 235 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 181 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATCGAGAGCAAGAAC 240 Query 236 GTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCC 295 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTTTTCTATTGGTTCCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCC 300 Query 296 ATTGATTTTGATCATCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAA 355 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATTGATTTTGATCACCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAA 360 Query 356 GAAGATTGTCAAGAGGAAGAGAAGGTGATAGAGACATTACAACTCTTTCCGGTGAATTCA 415 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 GAAGATTGTCAAGAGGACGAGAAGGTGATAGAGACATTGCAACTCTTTCCGGTGAATTCA 420 Query 416 TTTGAAGACTCCAACTCCAAGGTGGACAAAATGAGAGCTAGAGGCAATAACCAGTACCGT 475 ||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| Sbjct 421 TTTGAAGACTCTAACTCCAAGGTGGAGAAAATGAGAGCTAGAAGCAATAATCAGTACCGT 480 Query 476 GAATATATTCGAGAGACCA-C--CACGACGTCGTTTTCTCCATACTCATCATGTGGAGCT 532 ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||| Sbjct 481 GAATATATTCGAGAGACCAACAACACAACGTCGTTTTCTCCATATTCATCATGTGGAGCT 540 Query 533 GAAATGGAACATCCACCGCCATTAGATCTTCGATTAAGCTTTCTTT-AAGTCATTGACCA 591 || ||||||||||||||||| ||||||||||||||||||||||||| || | |||||||| Sbjct 541 GAGATGGAACATCCACCGCCGTTAGATCTTCGATTAAGCTTTCTTTGAATT-ATTGACCA 599 Query 592 CA 593 || Sbjct 600 CA 601 Score = 71.3 bits (38), Expect = 1e-11 Identities = 56/64 (88%), Gaps = 4/64 (6%) Strand=Plus/Plus Query 689 TCCAATGCATG-GTTTATCAAAAAGT-TGTCTCATTTTGTTTGATATAAGAATCTATGTT 746 ||||||||||| | |||| | | ||| | | ||||||||||||||||||||||||||||| Sbjct 602 TCCAATGCATGAG-TTATGACATAGTAT-TTTCATTTTGTTTGATATAAGAATCTATGTT 659 Query 747 ATGG 750 |||| Sbjct 660 ATGG 663 > Ahg349845 jgi|Araly1|349845|fgenesh1_pg.C_scaffold_6000438 Length=582 Score = 178 bits (96), Expect = 5e-44 Identities = 212/264 (80%), Gaps = 23/264 (9%) Strand=Plus/Plus Query 68 AACAATAACGGAGGA---AC-G--GGGACGAAGTGCGGGA-GATGGAATCCAACGGTGGA 120 ||||||||||||||| || | ||||| ||||| ||| | |||||||| |||||||| Sbjct 46 AACAATAACGGAGGAGGGACGGCCGGGACAAAGTG-TGGACGGTGGAATCCGACGGTGGA 104 Query 121 GC-AGTTGAAGATAT-TGACTGATCTGTTTCGA-GCCGGTCTTA-GAACTCC-AACAACT 175 || || ||||| | | |||| |||||| ||| | || || | || |||| || | | || Sbjct 105 GCAAG-TGAAGCT-TCTGACGGATCTG-TTCAAGGCGGGGC-TACGAACACCGAGC-ACG 159 Query 176 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAAT 235 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 160 GATCAGATTCAGAAGATCTCTACGGAGCTAAGTTTCTACGGTAAGATTGAGAGCAAGAAC 219 Query 236 GTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAA-CGTCGTAAAATCTC 294 || ||||||||||| || || ||||| ||||| ||||| || ||| || || | |||||| Sbjct 220 GTGTTCTATTGGTTCCAAAACCATAAAGCTAGAGAGAGACA-AAAGCGCCGCAGAATCTC 278 Query 295 CAT--TG-ATTTTGATCATCATCA 315 || || ||||||| |||| ||| Sbjct 279 CACCGTGGATTTTGACCATCGTCA 302 > Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1 Length=1333 Score = 76.8 bits (41), Expect = 2e-13 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 230 AAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 273 ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 511 AAGAACGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 554 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27639114825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5