BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11260.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478466 jgi|Araly1|478466|fgenesh2_kg.3__1167__AT3G11260.1 872 0.0
Ahg349845 jgi|Araly1|349845|fgenesh1_pg.C_scaffold_6000438 178 5e-44
Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1 76.8 2e-13
> Ahg478466 jgi|Araly1|478466|fgenesh2_kg.3__1167__AT3G11260.1
Length=663
Score = 872 bits (472), Expect = 0.0
Identities = 561/602 (93%), Gaps = 14/602 (2%)
Strand=Plus/Plus
Query 5 AAACAGTTGAGGACTTTACATCTGAACATGTCTTTCTCCGTGAAAGGTCGAAGCTTACGT 64
|||||||| |||| |||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 AAACAGTTTAGGAGTTTATATCTGAAAATGTCTTTCTCCATGAAAGGTCGAAGCTTACGT 60
Query 65 GGCAACAATAAC------GGAGGA---ACGGGGACGAAGTGCGGGAGATGGAATCCAACG 115
|||||||| ||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct 61 GGCAACAACAACGGAGGAGGAGGAGGGACGGGGACAAAGTGCGGGAGATGGAATCCTACG 120
Query 116 GTGGAGCAGTTGAAGATATTGACTGATCTGTTTCGAGCCGGTCTTAGAACTCCAACAACT 175
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 121 GTGGAGCAGTTGAAGATATTGACTGATCTATTTCGAGCTGGTCTTAGAACTCCGACCACT 180
Query 176 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAAT 235
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATCGAGAGCAAGAAC 240
Query 236 GTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCC 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTTCTATTGGTTCCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCC 300
Query 296 ATTGATTTTGATCATCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAA 355
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGATTTTGATCACCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAA 360
Query 356 GAAGATTGTCAAGAGGAAGAGAAGGTGATAGAGACATTACAACTCTTTCCGGTGAATTCA 415
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GAAGATTGTCAAGAGGACGAGAAGGTGATAGAGACATTGCAACTCTTTCCGGTGAATTCA 420
Query 416 TTTGAAGACTCCAACTCCAAGGTGGACAAAATGAGAGCTAGAGGCAATAACCAGTACCGT 475
||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 421 TTTGAAGACTCTAACTCCAAGGTGGAGAAAATGAGAGCTAGAAGCAATAATCAGTACCGT 480
Query 476 GAATATATTCGAGAGACCA-C--CACGACGTCGTTTTCTCCATACTCATCATGTGGAGCT 532
||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||
Sbjct 481 GAATATATTCGAGAGACCAACAACACAACGTCGTTTTCTCCATATTCATCATGTGGAGCT 540
Query 533 GAAATGGAACATCCACCGCCATTAGATCTTCGATTAAGCTTTCTTT-AAGTCATTGACCA 591
|| ||||||||||||||||| ||||||||||||||||||||||||| || | ||||||||
Sbjct 541 GAGATGGAACATCCACCGCCGTTAGATCTTCGATTAAGCTTTCTTTGAATT-ATTGACCA 599
Query 592 CA 593
||
Sbjct 600 CA 601
Score = 71.3 bits (38), Expect = 1e-11
Identities = 56/64 (88%), Gaps = 4/64 (6%)
Strand=Plus/Plus
Query 689 TCCAATGCATG-GTTTATCAAAAAGT-TGTCTCATTTTGTTTGATATAAGAATCTATGTT 746
||||||||||| | |||| | | ||| | | |||||||||||||||||||||||||||||
Sbjct 602 TCCAATGCATGAG-TTATGACATAGTAT-TTTCATTTTGTTTGATATAAGAATCTATGTT 659
Query 747 ATGG 750
||||
Sbjct 660 ATGG 663
> Ahg349845 jgi|Araly1|349845|fgenesh1_pg.C_scaffold_6000438
Length=582
Score = 178 bits (96), Expect = 5e-44
Identities = 212/264 (80%), Gaps = 23/264 (9%)
Strand=Plus/Plus
Query 68 AACAATAACGGAGGA---AC-G--GGGACGAAGTGCGGGA-GATGGAATCCAACGGTGGA 120
||||||||||||||| || | ||||| ||||| ||| | |||||||| ||||||||
Sbjct 46 AACAATAACGGAGGAGGGACGGCCGGGACAAAGTG-TGGACGGTGGAATCCGACGGTGGA 104
Query 121 GC-AGTTGAAGATAT-TGACTGATCTGTTTCGA-GCCGGTCTTA-GAACTCC-AACAACT 175
|| || ||||| | | |||| |||||| ||| | || || | || |||| || | | ||
Sbjct 105 GCAAG-TGAAGCT-TCTGACGGATCTG-TTCAAGGCGGGGC-TACGAACACCGAGC-ACG 159
Query 176 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAAT 235
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 160 GATCAGATTCAGAAGATCTCTACGGAGCTAAGTTTCTACGGTAAGATTGAGAGCAAGAAC 219
Query 236 GTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAA-CGTCGTAAAATCTC 294
|| ||||||||||| || || ||||| ||||| ||||| || ||| || || | ||||||
Sbjct 220 GTGTTCTATTGGTTCCAAAACCATAAAGCTAGAGAGAGACA-AAAGCGCCGCAGAATCTC 278
Query 295 CAT--TG-ATTTTGATCATCATCA 315
|| || ||||||| |||| |||
Sbjct 279 CACCGTGGATTTTGACCATCGTCA 302
> Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1
Length=1333
Score = 76.8 bits (41), Expect = 2e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 230 AAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 273
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 511 AAGAACGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5