BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11270.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478467 jgi|Araly1|478467|fgenesh2_kg.3__1168__AT3G11270.1 1653 0.0
Ahg940006 jgi|Araly1|940006|scaffold_600550.1 1118 0.0
> Ahg478467 jgi|Araly1|478467|fgenesh2_kg.3__1168__AT3G11270.1
Length=1105
Score = 1653 bits (895), Expect = 0.0
Identities = 1060/1134 (93%), Gaps = 33/1134 (3%)
Strand=Plus/Plus
Query 17 AAAACGGAATCAAAAGTTGAGGTTTTGATCATTCCCGGAGAAAGAAATTTAGAATT-ACT 75
||||||||||| ||||||||||||||||||||||| | | |||||||| || | |
Sbjct 1 AAAACGGAATCGGAAGTTGAGGTTTTGATCATTCCC-G-G--AGAAATTT---TTTGAGT 53
Query 76 CAAGCGAATTTGATTAACCCAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGG 135
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 54 --AGCGAATTTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGG 111
Query 136 ACAATCGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAAT 195
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ACGATAGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAAT 171
Query 196 CGTGTAGCCAAGGACACGA-GCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCT-CTC 253
|||||||||||||| || | |||||||||||||||||||||||||||||| |||| | |
Sbjct 172 CGTGTAGCCAAGGATAC-ACGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAACAGCTGC-C 229
Query 254 GTGGTACTGTTGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACA 313
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GTGGTACTGTCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACA 289
Query 314 CAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAA 373
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CAAGCATCTGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAA 349
Query 374 TTAATGCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATG 433
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 350 TTAATGCTAAGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATG 409
Query 434 ATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTG 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTG 469
Query 494 ATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGA 553
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 470 ATGTCCAACCTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGA 529
Query 554 AAGAGAATGCTACCCAGAAAAGCCAACAGGTTTTTGTACACGTGCCTACAGAAATTGCAG 613
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 530 AGGAGAATGCTACCCAGAAAAGCCAGCAGGTGTTTGTACACGTGCCTACAGAAATTGCGG 589
Query 614 CTCATGAAGTTGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCA 673
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CTCACGAAGTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCA 649
Query 674 TCAGTACCTTGGCAACTGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCAC 733
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 650 TCAGTACCTTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCAC 709
Query 734 GACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACC 793
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GACTTCGGGAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACC 769
Query 794 ATGAAATCTTATACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACG 853
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATGAAATCTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACG 829
Query 854 AGTTGGTTAAAGCCTTTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTT 913
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 830 AATTGGTTAAGGCCTTTGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGT 889
Query 914 CGCTTATCCGAAGTGTAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGG 973
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 890 CGCTTATCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGG 949
Query 974 AACATGAAAAAGCAGAGGACTCAAAGCCTGTTGACATACCCTT-AATCACTGAGAGTTAA 1032
||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||
Sbjct 950 AACATGAAAAAGCAGAGGACTCAAAGCCTGTTGCCATACC-TGCAATCACTGGGAGTTAA 1008
Query 1033 ATGCAGCCAAATTTCGAGCTTTGGGAAGATATTTAATCGGATGTTACTCTGTCATTTGCT 1092
||| |||||||||||||| | || | | |||||||||| ||||||| ||
Sbjct 1009 ATGTAGCCAAATTTCGAG-T-----AA--T-T------GGATGTTACT--GTCATTTCCT 1051
Query 1093 GCATGTGAAGAGGGTCTGTAGGGGAACAAAACGGGTTTGGTCTCGTTCCGATGA 1146
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1052 GCATGTCAAGAGGGTCTGTTGGGGAACAAAACGGGTTTGGTCTCGTTCCGATGA 1105
> Ahg940006 jgi|Araly1|940006|scaffold_600550.1
Length=968
Score = 1118 bits (605), Expect = 0.0
Identities = 821/925 (89%), Gaps = 15/925 (2%)
Strand=Plus/Plus
Query 96 AACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACAATCGAGAAAGTGATCGT 155
||| |||||||| || ||||||||||| ||||| |||||||| |||||||||||| | ||
Sbjct 18 AAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAAAGTGGTTGT 76
Query 156 TCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCCAAGGA--CACG 213
||| ||||| |||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 77 TCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAAGGATTCAC- 135
Query 214 AGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAGTAGCTCTCGTGGTACT-GTTGACGTCA 271
||||||| |||||||| ||| || ||||| || ||||| ||||||| | ||||| ||||
Sbjct 136 -GCAAGCGTGTCGTCGGTGTTCTT-CTCGGGAGCAGCTCCCGTGGTA-TCGTTGATGTCA 192
Query 272 CCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTG 331
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 193 CCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTG 252
Query 332 ATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTAAGGAGCATA 391
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 253 ATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGAGCACG 312
Query 392 TTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCTT 451
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 313 TTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCCT 372
Query 452 TATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAAC 511
| ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 373 TGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAAAGAAC 432
Query 512 TTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGAAAGAGAATGCTACCCAGA 571
|||||||||| ||||||||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 433 TTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTACTCAGA 492
Query 572 AAAGCCA-ACAGGTTTTTGTACACGTGCCTACAGAAATTGCAGCTCATGAAGTTGAGGAA 630
||||||| | || |||| || || || ||||||||||||| ||||||||||| ||||||
Sbjct 493 AAAGCCAGAAAG-TTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGAGGAA 551
Query 631 ATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTAC-CTTGGCAAC 689
|| || ||||||||||||||||||||||| ||||||||||| |||||||| || ||| ||
Sbjct 552 ATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCT-GGCGAC 610
Query 690 TGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGGGAGATCCG 749
|||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 611 TGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCG 670
Query 750 GACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAATCTTATACC 808
|| ||||||||||||||||||||||||||| ||||| | |||||||||| || |||||||
Sbjct 671 GAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGATTTTATACC 729
Query 809 ATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCT 868
|||| |||||||| |||||||||||||||||| |||| || ||||||||||| || ||||
Sbjct 730 ATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCT 789
Query 869 TTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAAGTG 928
|| |||| |||||||||||||||||||| || ||||| || || || || || || ||||
Sbjct 790 TTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAGTG 849
Query 929 TAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGGAACATGAAAAAGCAG 988
|||| || ||||||| ||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 850 TAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGCAG 909
Query 989 AGGACTCAAAGCCTGTTGACATACC 1013
|||||||||||||||| | ||||||
Sbjct 910 AGGACTCAAAGCCTGTGGCCATACC 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5