BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11280.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478469 jgi|Araly1|478469|fgenesh2_kg.3__1170__AT3G11280.1 1578 0.0
Ahg940007 jgi|Araly1|940007|scaffold_600551.1 433 2e-120
> Ahg478469 jgi|Araly1|478469|fgenesh2_kg.3__1170__AT3G11280.1
Length=1081
Score = 1578 bits (854), Expect = 0.0
Identities = 1019/1095 (93%), Gaps = 25/1095 (2%)
Strand=Plus/Plus
Query 16 tccttcactatctctc--tctctttactgggtcttcttcagcttctgagtc-t-tctc-c 70
|||||||||||||||| |||||| |||||| ||||||||||||||||| | |||| |
Sbjct 1 TCCTTCACTATCTCTCTGTCTCTTAACTGGG---TCTTCAGCTTCTGAGTCTTCTCTCTC 57
Query 71 tctctctctatctctcAAGTGGGCTTTGCTTTGCTGTTTTTGTCTTCCTTCGACGACTCA 130
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 58 TCTCTCTCTATCTGTCAAGT-GG----GCTTTGCTGTTTTTGTCTTCCTTCGACGACTCT 112
Query 131 CTTTTGCAGATTCTCATAAATTCTTCAAAGCTTTGAGTCTTTTTTCAGATTCGAGGGTCG 190
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 113 CTTTTGCAGATTCTCATAGATTCTTCAAAGCTTTGAGTC-TTTTTCAGATTCGAAGGTCG 171
Query 191 GTTTTATATATGCTTCAAATCTCTTACCCAAATCAGGTATGGAGACTCTGCATCCATTCT 250
| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 172 G-TTT-TATATGCTTCAAATCTCTCACCCAAATCAGGTATGGAGACTCTGCATCCATTCT 229
Query 251 CTCACCTACCTATCTCTGACCACCGGTTCGTTGTTCAAGAGATGGTGAGCTTACACAGCT 310
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 230 CTCACCTGCCTATCTCTGACCACCGGTTCGTTGTTCAAGAGATGGTGAGCTTACACAACT 289
Query 311 CGAGTAGC-G--GTAGCTGGACTAAAGAAGAGAACAAGATGTTCGAACGAGCTCTTGCGA 367
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGAGCAGCAGTAGTAGCTGGACTAAAGAAGAGAACAAGATGTTCGAACGAGCTCTTGCGA 349
Query 368 TATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGTTGCTTCCATGATCCCTGGAAAGA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGTTGCTTCCATGATCCCTGGAAAGA 409
Query 428 CTGTTTTTGATGTTATGAAGCAATATAGTAAGCTTGAAGAAGACGTTTTCGATATTGAAG 487
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 410 CTGTTTTGGATGTTATGAAGCAATATAGTAAGCTTGAAGAAGACGTTTTCGATATCGAAG 469
Query 488 CAGGACGTGTTCCCATTCCTGGTTATCCTGCAGCTTCTTCTCCCTTGGGGTTTGA-CACG 546
||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||| | |
Sbjct 470 CAGGACGTGTTCCTATTCCGGGTTACCCTGCAGCTTCTTCTCCCTTGGCGTTTGATC-CT 528
Query 547 GACATGTGTCGTAAACGGCCTAGTGGAGCTAGAGGATCTGATCAAGATCGAAAGAAAGGA 606
|||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 529 GACACGTGTCGGAAACGGCCTAATGGAGCCAGAGGATCTGATCAAGATCGAAAGAAAGGA 588
Query 607 GTCCCTTGGACAGAGGAAGAACACAGGAGATTCTTGTTAGGCCTTCTCAAGTACGGTAAA 666
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 589 GTCCCTTGGACAGAGGAAGAGCACAGGAGATTCTTGTTGGGGCTTCTCAAGTACGGTAAA 648
Query 667 GGAGATTGGAGAAACATATCGAGAAACTTCGTGGTGTCAAAGACGCCAACGCAAGTGGCG 726
||||| |||||||||||||| |||||||| || || || ||||| |||||||||||||||
Sbjct 649 GGAGACTGGAGAAACATATCAAGAAACTTTGTTGTTTCGAAGACACCAACGCAAGTGGCG 708
Query 727 AGCCACGCCCAAAAGTATTACCAGAGACAGCTCTCCGGAGCCAAGGACAAACGCAGGCCA 786
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||
Sbjct 709 AGCCACGCCCAAAAGTATTATCAGAGACAACTCTCCGGAGCCAAGGACAAGCGCCGGCCA 768
Query 787 AGTATCCATGACATCACAACCGGCAATCTTCTCAATGCCAATCTCAACCGTTCCTTTTCC 846
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGTATCCATGACATCACTACCGGCAATCTTCTCAATGCCAATCTCAACCGTTCCTTTTCC 828
Query 847 GATCATAGAGATATTCTCCCTGATTTAGGGTTTATCGATAAGGATGATACGGAGGAGGGA 906
||||| | ||||| ||||||||||||||||||||||| |||||| || | |||||||||
Sbjct 829 GATCACACCGATATCCTCCCTGATTTAGGGTTTATCGACAAGGATAATGCTGAGGAGGGA 888
Query 907 GTAATATTTATGGGTCAGAATCTCTCTTCAGAAAATCTGTTTTCTCCATCACCAACTTCA 966
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 889 GTAATATTTATGGGTCAGAATCTATCTTCAGAAAACCTGTTTTCTCCATCACCAACTTCA 948
Query 967 TTCGAAGCTGCCATTAACTTCGCCGGAGAAAATGTCTT-CAGTGCCGGAGCTTAAGGCAA 1025
||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||
Sbjct 949 TTCGAAGCTGCCATTAACTTCGCCGGACAAAATG-CTTTCAGTGCCGGAGCTTAAGGTAA 1007
Query 1026 CATAGAATCCCCAAACTCAGCGTTCTTAAGAA-TCTGAGTTTTGAAACTGTAATTAGAGA 1084
|||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1008 CATAGAATCCCCCAACTCAGCGTTCTAAAGAAGT-TGAGTTTTGAAACTGTAATTAGAGG 1066
Query 1085 AATATAAGCAAAACC 1099
| |||||||||||||
Sbjct 1067 ATTATAAGCAAAACC 1081
> Ahg940007 jgi|Araly1|940007|scaffold_600551.1
Length=860
Score = 433 bits (234), Expect = 2e-120
Identities = 509/636 (80%), Gaps = 42/636 (7%)
Strand=Plus/Plus
Query 229 ATGGAGACTCTGCATCCA-TTCTCTCAC-C-TACCTATCTCTGACCACCGGTTCGTTGTT 285
||||| |||||||||||| | ||||||| | | || | |||||||||||| || || |||
Sbjct 21 ATGGAAACTCTGCATCCACTACTCTCACACGTGCCAACCTCTGACCACCGTTTTGTAGTT 80
Query 286 CAAGAGATGGTGAGCTTACACAGCTCGAGTAGCGGTAGCTGGACTAAAGAAGAGAACAAG 345
||||||||| || |||| || || | | | | ||||||||||||||||||||||||
Sbjct 81 CAAGAGATGATGTGCTTGCAAAG--C---T--C-G-AGCTGGACTAAAGAAGAGAACAAG 131
Query 346 ATGTTCGAACGAGCTCTTGC-GATATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGT 404
| ||| || |||||||| || | | |||||||| ||| ||||||| |||||||| |||||
Sbjct 132 AAGTTTGAGCGAGCTCTCGCTG-TCTACGCTGATGACACGCCTGACCGCTGGTTCAAAGT 190
Query 405 TGCTTCCATGATCCCTGGAAAGACTGTTTTTGATGTTATGAAGCAATA-TAGTAAGCTTG 463
|||| | |||||||||||||| || | | ||||| |||| |||||| | ||| || |
Sbjct 191 TGCTGCTATGATCCCTGGAAAAACCATATCAGATGTCATGAGGCAATACT-CTAAACTCG 249
Query 464 AAGAAGACGTTTTCGATATTGAAGCAGGACGTGTTCCC-ATTCCTGGTTATCC-TGCAGC 521
|||||||| | |||||||| |||||||||| || |||| || || ||||| || | ||||
Sbjct 250 AAGAAGACCTCTTCGATATCGAAGCAGGACTTG-TCCCGATCCCGGGTTA-CCATTCAGC 307
Query 522 T--T-CTTCT-CCCTTG---GGGTT-TGA---CACG-GAC----AT--GTGTCGTAAACG 563
| | | | | ||| |||| ||| | || ||| || || ||| ||||
Sbjct 308 TACTCCCTGTGGATTTGATCAGGTTGTGAGTCCGCGTGACTTTGATGCGTATCGCAAACT 367
Query 564 GCCTAGTGGAGCTAGAGGATCTGATCAAGATCGAAAG-AAAGGAGTCCCTTGGACAGAGG 622
|||| |||||| ||||||| ||||||||| || || ||||||||||| ||||||||||
Sbjct 368 ACCTAATGGAGCCAGAGGATTTGATCAAGACCG-TAGAAAAGGAGTCCCATGGACAGAGG 426
Query 623 AAGAACACAGGAGATTCTTGTTAGGCCTTCTCAAGTACGGTAAAGGAGATTGGAGAAACA 682
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 427 AAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTACGGGAAAGGAGATTGGAGAAACA 486
Query 683 TATCGAGAAACTTCGTGGTG-TCAAAGACGCCAACGCAAGTGGCGAGCCACGCCCAAAAG 741
||||||| ||||| |||| | ||||| || ||||| || || || ||||| |||||||||
Sbjct 487 TATCGAGGAACTTTGTGG-GATCAAAAACACCAACTCAGGTAGCAAGCCATGCCCAAAAG 545
Query 742 TATTACCAGAGACAGCTCTCCGGAGCCAAGGACAAACGCAGGCCAAGTATCCATGACATC 801
|| |||||||||||||| ||||| || || ||||||||| |||| || || || ||||||
Sbjct 546 TACTACCAGAGACAGCTTTCCGGTGCGAAAGACAAACGCCGGCCTAGCATTCACGACATC 605
Query 802 ACAACCGGCAATCTTCTCAATGCCAATCTCAACCGT 837
|| |||| |||||||||||| || ||||| | ||||
Sbjct 606 ACCACCGTCAATCTTCTCAACGCAAATCTTAGCCGT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5