BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11320.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478471 jgi|Araly1|478471|fgenesh2_kg.3__1172__AT3G11320.1 2457 0.0
Ahg487383 jgi|Araly1|487383|fgenesh2_kg.6__517__AT5G05820.1 1175 0.0
> Ahg478471 jgi|Araly1|478471|fgenesh2_kg.3__1172__AT3G11320.1
Length=1594
Score = 2457 bits (1330), Expect = 0.0
Identities = 1528/1618 (94%), Gaps = 36/1618 (2%)
Strand=Plus/Plus
Query 10 AAAAATTAGTAACA--TTTTT---AA-A-A-AGAGAGAGCTTAAGCCAAAGATCTCTCAT 61
|||||||||||||| ||||| || | | |||||||||||||||||||||||||||||
Sbjct 1 AAAAATTAGTAACATTTTTTTAAAAAGAGAGAGAGAGAGCTTAAGCCAAAGATCTCTCAT 60
Query 62 TGACCTTTGcttcttcatcttcttctccgatcacagtttctctctttctggattccacca 121
|||||||||||||||||||||||||| | || | | || | ||||||||||||||||
Sbjct 61 TGACCTTTGCTTCTTCATCTTCTTCTTC-TTCTCCG-ATCACAGTTTCTGGATTCCACCA 118
Query 122 ttcttctcttTGTCGTCTAT-GTGACCTATTCTCGATTCGATCCATGGAATAATCTCTGT 180
|||||||| |||| ||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 119 TTCTTCTC-TTGTTATCT-TCGTGACCTAATCTCGATTCGATCCATGGAATAATCTCTGT 176
Query 181 CCGAAGAAGATCTCTCATTCCCCTTCAAAAGCAGACAGATTCGAAACTTTCCCCC-AAAT 239
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 177 CCGAAGAAGATCTCTCATTCCCC--CAAAAGCAGACAGATTCGAAACTTTCCCCCAAAAT 234
Query 240 TCGTGGAAATTTTGTGTTAGGGTTTGGGTTATT-CTCAAATAGAATCAATCAGATCGttt 298
||||||| |||||||||||||||||| || || ||||||| ||||| |||||||||
Sbjct 235 TCGTGGAGTTTTTGTGTTAGGGTTTGGATT-TTCCTCAAATTGAATCGATCAGATCG--- 290
Query 299 ttttttttGTTAGAAGAAGATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACT 358
||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ----GCTTG-T---A-AAGATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACT 341
Query 359 CGTAGCGTCATGGTATTCATCGAACATCGGAGTTTTATTGCTGAACAAGTACTTGTTAAG 418
||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 342 CGTCGCGTCATGGTACTCATCGAATATCGGAGTTTTGTTGCTGAACAAGTACTTGTTAAG 401
Query 419 CAACTATGGATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CAACTATGGATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCT 461
Query 479 TCTCAGCTACGTTGCTATTGCTTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTCG 538
|||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 462 TCTCAGCTACGTCGCCATTGCGTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTAG 521
Query 539 AGTTCAGTTTCTTAAGATCGCTGCGTTAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AGTTCAGTTTCTTAAGATCGCTGCGTTAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGG 581
Query 599 GAATATCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATTGGTGCTACGACGCC 658
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 582 GAACATCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATCGGTGCTACGACGCC 641
Query 659 GTTTTTCACCGCCGTGTTTGCTTATCTGATTACTTTTAAGAGAGAAGCTTGGTTGACTTA 718
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 642 GTTTTTCACCGCCGTGTTTGCTTATCTGATAACGTTCAAGAGAGAAGCTTGGTTGACTTA 701
Query 719 CTTCACTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGAGTGAGCCAAGTTT 778
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 702 CTTCACTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGGGTGAACCAAGTTT 761
Query 779 CCACCTGTTTGGATTCATTATGTGCATTGCAGCTACAGCTGCAAGAGCACTTAAATCAGT 838
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 762 CCACCTGTTTGGATTCATTATGTGCATTGCAGCCACAGCTGCAAGAGCACTTAAATCAGT 821
Query 839 TCTTCAAGGAATTTTGCTTTCTTCAGAAGGGGAGAAGCTAAATTCCATGAACCTCCTCCT 898
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 TCTTCAAGGAATTTTGCTATCTTCAGAAGGGGAGAAGCTAAATTCAATGAACCTCCTCCT 881
Query 899 TTACATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACACTTATCATGGaaaaaaa 958
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 882 TTACATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACCCTTATCATGGAAAAAAA 941
Query 959 TGTTGTTGGCATTACAATTGCACTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCT 1018
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 942 TGTTGTTGGCATTACAATTGCGCTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCT 1001
Query 1019 ATTCAATTCGGCGCTAGCTTATTTTGTGAACTTGACCAATTTCTTAGTCACGAAACACAC 1078
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1002 ATTCAATTCAGCACTAGCTTATTTCGTGAACTTGACCAATTTCTTAGTCACGAAACACAC 1061
Query 1079 CAGCGCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CAGCGCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATC 1121
Query 1139 AATCCTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGT 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CATCCTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGT 1181
Query 1199 CTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAATAAAAAAGAAGCATTCG 1258
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1182 CTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAATGAAA--GAAGCATTCG 1239
Query 1259 TTATATTTGTTCAGTCCCTCAGGTAAACAAACACAGGCAAGTTTCCTCCACTGTGAACTG 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TTATATTTGTTCAGTCCCTCAGGTAAACAAACACAGGCAAGTTTCCTCCACTGTGAACTA 1299
Query 1319 AAAAACCTTACACAGCATCTTTGGACCAAAAGCAAAGGATGCGTGAAAGCAATACCAAAG 1378
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1300 AAAAACCTTACACAGCATCTTTGGACCAAAAGCAAAGGATGTGTGAAAGCAACACCAAAG 1359
Query 1379 GATGAGAGTACCAAAAGTAATCATTTAGAGGACTTCACAAATAAGTGAttttttttccct 1438
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1360 GATCAGAGTATCAAAAGTAATCATTTAGAGGACTTCACAAATAAGTGATTTTTTTCCCCT 1419
Query 1439 tcttttgttcc-ttttttGTTAATCGGATCCTCTACTGCTTTCGTCGTAGGTTGTTCTAA 1497
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1420 TCTTTTGTTCCATTTTTTGTTAATCGGATTCTCTACTGCTTTCGTCGTAGGTTGTTCTAA 1479
Query 1498 GAGTAACTTCGATTTAGCTTCTTCTTTTTGTTGTCGATTCTTTACATCTAGTTTTGTGAT 1557
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1480 GAGTAACTTCGATTTAGCTTCTTCTTTTT-T-GTCGATTCTTTACATCTAGTTTTGTGAT 1537
Query 1558 ATCAAACATTTACAACACTGATTAATTAATGGAAGAGGACAAAGCtttttttCTTTTC 1615
||||| |||||||||||||||||||||||||||| |||| ||||| |||||| |||||
Sbjct 1538 ATCAA-CATTTACAACACTGATTAATTAATGGAAAAGGAAAAAGCGTTTTTTGTTTTC 1594
> Ahg487383 jgi|Araly1|487383|fgenesh2_kg.6__517__AT5G05820.1
Length=1622
Score = 1175 bits (636), Expect = 0.0
Identities = 841/940 (89%), Gaps = 14/940 (1%)
Strand=Plus/Plus
Query 310 AGAAGAA-GATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACTCGTAG-CGTC 367
|||| || ||||||||| ||| | ||||||||||||||||||||||| || || | ||||
Sbjct 286 AGAA-AACGATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCGGGCTAGT-GACGTC 343
Query 368 ATGGTATTCATCGAACATCGGAGTTTTATTGCTGAACAAGTACTTG-TTAAGCAACTATG 426
|||||| ||||||||||| ||||| || |||||||||||||||||| || ||||| || |
Sbjct 344 ATGGTACTCATCGAACATTGGAGTATTGTTGCTGAACAAGTACTTGCTT-AGCAATTACG 402
Query 427 GATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCTT-CTCAGC 485
|||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 403 GATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGTTC-GTTACTCAGC 461
Query 486 TACGTTGCTATTGCTTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTCGAGTTCAG 545
||||| || ||||||||| ||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 462 TACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGATCCCGAGTTCAG 521
Query 546 TTTC-TTAAGATCGCTGCGT-TAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGGGAATA 603
||| |||||||| | || | ||||||||||||| |||||||||||||| ||||| || |
Sbjct 522 -TTCTTTAAGATCTCAGC-TCTAAGTCTCGTTTTTTGTGTGTCGGTGGTCTTTGGTAACA 579
Query 604 TCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATTGGTGCTACGACGCCGTTTT 663
|||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 580 TCTCTCTTCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCGACGACGCCGTTTT 639
Query 664 TCACCGCCGTGTTTGCTTATCTGATTACTTTTAAGAGAGAAGCTTGGTTGACTTACTTCA 723
||||||||||||||||||| ||||| || |||||| ||| |||||||||||||||||||
Sbjct 640 TCACCGCCGTGTTTGCTTACCTGATGACGCTTAAGAAAGAGGCTTGGTTGACTTACTTCA 699
Query 724 CTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGAGTGAGCCAAG-TTTCCAC 782
||||||||||||| || ||||| ||||| |||||||||||| |||||||||| ||| |||
Sbjct 700 CTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCCAGTGGGGGTGAGCCAAGCTTT-CAC 758
Query 783 CTGTTTGGATTCATTATGTGCATTGCAGCTACAGCTGCAAGAGCACTTAAATCAGTTCTT 842
|||||||||||| |||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 759 CTGTTTGGATTCCTTATGTGCATTGCAGCCACAGCTGCGAGAGCACTTAAATCCGTGCTT 818
Query 843 CAAGGAATTTTGCTTTCTTCAGAAGGGGAGAAGCTAAATTCCATGAACCTCCTCCTTTAC 902
|||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||
Sbjct 819 CAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTCCTCCTTTAC 878
Query 903 ATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACACTTATCATGGaaaaaaaTGTT 962
|||||||| |||||||| |||||||| || |||||||| ||||||||||| |||||||||
Sbjct 879 ATGGCTCCAATAGCTGTCGTGTTCCTTCTGCCTGCTACTCTTATCATGGAGAAAAATGTT 938
Query 963 GTTGGCATTACAATTGCACTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCTATTC 1022
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 939 GTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTATCTTCTATTC 998
Query 1023 AATTCGGCGCTAGCTTATTTTGTGAACTTGACCAATTTCTTAGTCACGAAACACACCAGC 1082
||||| ||||| || ||||| || |||||||| ||||||||||||||||||||||| |||
Sbjct 999 AATTCAGCGCTCGCCTATTTCGTCAACTTGACAAATTTCTTAGTCACGAAACACACTAGC 1058
Query 1083 GCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATCAATC 1142
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1059 GCCCTGACTCTGCAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGTGGTCTCTATT 1118
Query 1143 CTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGTCTGT 1202
|| || |||| |||||| ||||||||||| |||||| | |||||||| ||||| ||||||
Sbjct 1119 CTAATCTTCAAGAATCCGGTCTCAGTGACCGGAATGCTGGGTTACTCCCTCACCGTCTGT 1178
Query 1203 GGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAAT 1242
||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAAT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5