BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11330.1
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317922 jgi|Araly1|317922|fgenesh1_pm.C_scaffold_3000938 1284 0.0
Ahg487385 jgi|Araly1|487385|fgenesh2_kg.6__519__AT5G05850.1 1007 0.0
> Ahg317922 jgi|Araly1|317922|fgenesh1_pm.C_scaffold_3000938
Length=1614
Score = 1284 bits (695), Expect = 0.0
Identities = 765/799 (96%), Gaps = 4/799 (1%)
Strand=Plus/Plus
Query 772 CGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACGAATT 831
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CGATTCCTGATTCAATAGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACGAATT 877
Query 832 CTCTGGAGACATTACCTGATTCCATCGGTTTACTGTCCAAACTAAAAATCCTGAATGTTT 891
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 878 CTCTGGAGACATTACCTGATTCTATCGGTTTACTGTCCAAACTGAAAATCCTGAATGTTT 937
Query 892 CGACTAACAAGCTCACATCCTTGCCTGACTCCATCTGCCGCTGTGGGTCGTTGGTTATCT 951
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CGACTAACAAGCTCACATGCTTGCCTGACTCCATCTGCCGCTGTGGGTCGTTGGTTATCT 997
Query 952 TGGACGTGAGCTTCAACCGTCTCACCTACTTACCGACCAACATCGGTC-CTGAGCTAGTG 1010
| |||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||
Sbjct 998 TAGACGTGAGCTTCAACCGTCTCACCTACTTACCAACCAACATTGGTCTC-GAGCTAGTG 1056
Query 1011 AATCTAGAAAAGCTCCTGGTTCAGTATAACAAGATCCGATCCTTCCCGACCAGTATAGGC 1070
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1057 AATCTAGAAAAGCTCCTGGTTCAGTATAACAAGATCCGATCATTCCCGACCAATATAGGC 1116
Query 1071 GAAATGAGATCCCTAAAACACCTCGACGCCCACTTCAACGAACTTAACGGCCTTCCTGAT 1130
||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||
Sbjct 1117 GAAATGAGATCCCTAAAACACTTGGACGCCCACTTCAACGAACTTCATGGCCTTCCTGAT 1176
Query 1131 TCTTTCGTGTTGCTCACAAATCTCGAGTACTTAAACCTAAGCAGCAACTTCAGTGATCTC 1190
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TCTTTCGTGTTGCTCACAAACCTCGAGTACTTAAACCTAAGCAGCAACTTCAGTGATCTC 1236
Query 1191 AAGGATCTCCCATTC-TCATTCGGCGAACTCATAAGCCTCCAAGAACTCGACTTGAGTAA 1249
||||||||||| ||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1237 AAGGATCTCCC-TTCCTCATTTGGGGACCTCATAAGCCTCCAAGAACTCGACTTGAGTAA 1295
Query 1250 CAACCAAATCCATGCCCTCCCTGACACTTTTGGCACACTTGATAGCCTGACCAAACTGAA 1309
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1296 CAACCAAATCCATGCCCTCCCAGACACTTTTGGCACACTCGATAGCCTGACCAAACTAAA 1355
Query 1310 TGTGGATCAGAACCCGCTCGTCGTCCCACCCGAGGAAGTGGTGAAGGAAGGTGTTGAAGC 1369
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1356 TGTGGATCAGAACCCGCTCGTGGTCCCACCTGAGGAAGTGGTGAAGGAAGGTGTTGAAGC 1415
Query 1370 TGTGAAGACGTACATGGGTCAGAGAAGGATCAGTATGTTGgaagaagaagagaagaagaa 1429
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1416 TGTGAAGACGTACATGGGTCAGAGAAGGATCAGAATGTTGGAAGAGGAAGAGAAGAAGAA 1475
Query 1430 AATGGAGGAAGAGATGGAGCAGGCAAACGCCGGGTGGCTCACACGAACCACATCGAAGCT 1489
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1476 AATGGAGGAGGAGATGGAGCAGGCAAACGCCGGGTGGCTCACACGAACCACATCGAAACT 1535
Query 1490 GAAAACATATGTCGCAGATGTTTCAGAGTATCTCGGATCAAATTCTCCTCGAGACCCTTA 1549
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1536 GAAAACTTATGTCGCAGATGTTTCAGAGTATCTCGGAACAAATTCTCCTCGAGACCCTTA 1595
Query 1550 CCTTGAACGACAGCTATGA 1568
|||||| ||||| ||||||
Sbjct 1596 CCTTGAGCGACAACTATGA 1614
Score = 1050 bits (568), Expect = 0.0
Identities = 676/724 (93%), Gaps = 23/724 (3%)
Strand=Plus/Plus
Query 69 ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTATGTCTTGGCTCGTCTC 128
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTACGTCTTGGCTCGTCTC 60
Query 129 CCTTCTTTCACCGCCAAAT--CC--CCT--TCCTCCTCCGTTCCTCCCTTCGACATCGAA 182
||||||||||||||||||| || ||| |||||||||||||||||||| || ||||||
Sbjct 61 CCTTCTTTCACCGCCAAATCCCCTTCCTCCTCCTCCTCCGTTCCTCCCTTTGATATCGAA 120
Query 183 CAACCA-C--CA-C--catcatcatcatcatcatc--G---AT---T-GAGATCGTCACT 227
|||||| | || | ||||||||||||||||||| | || | || ||||| |||
Sbjct 121 CAACCACCATCATCATCATCATCATCATCATCATCAAGCCAATCGATCGAAATCGTTACT 180
Query 228 CAGATGCCTCACTTAACACAACCAGATGTTCTCGCTTCAATGACAAGTGCGATCTCTGAC 287
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 CAGATGCCTCATTTAACACAACCAGATGTACTCGCTTCAATGACCAGTGCGATCTCTGAC 240
Query 288 GTCGCCGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCAGATCACGAATCAGTC 347
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 241 GTCGCCGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCTGATCACGAGTCCGTC 300
Query 348 GATAAGGCTCGTGCTAAACTCTCGGAAATCGAATCGTTCTTATCTGAATCGTTCGAGGAT 407
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GACAAGGCTCGTGCTAAGCTCTCGGAAATCGAATCGTTCTTATCTGAATCGTTTGAGGAT 360
Query 408 ATCGCG-TTAACCGATGCGGCGGCGAAAGATGAGAAGAGGAGACAAGAGATGGATCAGGA 466
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGCGCTT-ACCGATTCGGCGGCGAAAGATGAGAAGAGGAGACAAGAGATGGATCAGGA 419
Query 467 GAAGACTTGGTGTGAGTCGATTTTGAAGCTTGATGAGGTTCATGCTTCGTATGAGAAGCT 526
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGACTTGGTGTGAGTCGGTTTTGAAGCTTGATGAGGTTCATGCTTCGTATGAGAAGCT 479
Query 527 TTTGAAAGAAGCAGAGGAGAGGCTTGTTAGGATTTATGAATCTGCTGAGAAGAATGCGGC 586
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TTTGAAAGAAGCAGAGGAGAGGCTTGTCAGGATTTATGAATCTGCTGAGAAGAATGCGGC 539
Query 587 GGAGGATGAGGAGAATGTTGCGGCTGTGGAGGTTAATGAGGAGGTTGTTGGGATATTGCA 646
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGGATGAGGAGAATGTTGCGGCGGTGGAGGTTAATGAGGAGGTTGTTGGGATATTGCA 599
Query 647 GCATGCTTCTGCTAATCCGGTGGATCGTGTTGATTTGTCTGGGAGGAAACTGAGGTTGCT 706
||| ||||| || ||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 600 GCACGCTTCGGCCAATCCGGTGGATCGTGTGGATTTGTCTGGGAGGAAATTGAGATTGCT 659
Query 707 ACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTCTCCAACAATAAGCT 766
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 ACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTTTCCAACAATAAGCT 719
Query 767 TGAG 770
||||
Sbjct 720 TGAG 723
> Ahg487385 jgi|Araly1|487385|fgenesh2_kg.6__519__AT5G05850.1
Length=1672
Score = 1007 bits (545), Expect = 0.0
Identities = 1227/1550 (79%), Gaps = 71/1550 (5%)
Strand=Plus/Plus
Query 65 AACAATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTATGTCTTGGCTCG 124
|||||||||| | || | |||||||||||| |||||||| |||||||| ||||||| |||
Sbjct 52 AACAATGGCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTACGTCTTGGATCG 111
Query 125 TCTCCCTTCTTTCACCGCCAAATCCCCTTCCTCCTCCG-T-TCCTCCCTTCGA-CATCGA 181
||||||||| ||||||||||||||| ||||||| |||| | || ||| | | |||| |
Sbjct 112 TCTCCCTTCCTTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGACCC-ACCACCATCCA 170
Query 182 ACAACC-A-CCACcatcatcatcatcatca-tcGATTGAGATCGTCACTCAGATGCCTCA 238
| | || | || | ||||||||| | || || || |||||||| ||||||||||||||
Sbjct 171 A-ATCCGATCCTTCTTCATCATCA-AACCACTCTATCGAGATCGTGACTCAGATGCCTCA 228
Query 239 CTTAACACAACCAGATGTTCTCGCTTCAATGAC-AAGTGCGATCTCTGACGTCGC-CGAG 296
||| | || || |||||||| || || ||||| || || ||| | ||||| || | ||
Sbjct 229 CTTGGCTCATCCTGATGTTCTTGCCTCCATGACTAA-CGCTATCGCCGACGTTGCTC-AG 286
Query 297 ACTCGATCTATCCTTCGAACCCTAGGACCTAGACCAGATCACGAATCAGTCGATAAGGCT 356
|| ||||| | ||||||||||||||||||||||| ||||||||| | ||||| || |||
Sbjct 287 ACCCGATCCGTTCTTCGAACCCTAGGACCTAGACCTGATCACGAAACCGTCGACAAAGCT 346
Query 357 CGTGCTAAACTCTCG-GAAATCGAATCGTTC-TTATCTGAATCGTTCGAGGATATCG--C 412
||||| | ||| || || ||||| || || || || ||||| ||||| || |||| |
Sbjct 347 CGTGCCAGGCTC-CGTGAGATCGACGCG-TCTTTGTCGGAATCTTTCGAAGAGATCGCTC 404
Query 413 -GT-T---AACCG--A-TG-C--GGCGGCGAAAGATGAGAAGAGGAGACAAG-AGATGGA 460
| | || || | || | ||||| ||| || |||||||||| ||| | ||||
Sbjct 405 TCTCTCCGAA-CGATATTGACGTGGCGGAGAAGGAACTGAAGAGGAGAGAAGCTG-TGGA 462
Query 461 TCAGGAGAAGACTTGGTGTGAGTCGAT-TTTGAAGCTTGATGAGGTTCATGCTTCGTATG 519
||| ||||||||||||| | | ||||| || |||||| | ||| |||||| || ||||
Sbjct 463 TCAAGAGAAGACTTGGTATAACTCGATCCTT-AAGCTTAACGAGCTTCATGAATCTTATG 521
Query 520 AGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTTGTTAGGATTTATGAATCTGCTGAGAAGA 579
||||||||||||||||||||||||||||||| || ||||| ||||| || || |||||||
Sbjct 522 AGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTCGTGAGGATCTATGAGTCCGCCGAGAAGA 581
Query 580 ATGCGGC-G-GA-GGATGAGGAG-AATGTTGCGGCTG-TGGAGGTTAATGAGGAGGTTGT 634
||||||| | | || |||||| || | ||||| || | || |||||||| ||||||||
Sbjct 582 ATGCGGCCGCGGTGGCGGAGGAGGAA-GCTGCGG-TGGTTGAAGTTAATGAAGAGGTTGT 639
Query 635 TGGGATATTGCAGCATGCTTCTGCT-AATCCGGTGGATCGTGTTGATTTGTCTGGGAGGA 693
| ||| |||| || ||| | | | ||||| |||| || |||||||||||||| |||
Sbjct 640 CAGTATACTGCAACAAGCTGCGG-TGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGA 698
Query 694 AACTGAGGTTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGT-TGCTTGTTCTTAATCTC 752
|| ||| ||||| |||||||| ||||| | ||||||||| | | |||||||||||||||
Sbjct 699 AATTGAAATTGCTTCCTGAAGCATTTGGAAAGATTCAAGG-TCTCCTTGTTCTTAATCTC 757
Query 753 TCCAACAATAAGCTTGAGTCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAA 812
| |||||| |||||||| | ||||||||||| || ||||| ||||| | ||| | |||
Sbjct 758 TATAACAATCAGCTTGAGGCTATTCCTGATTCGATAGCTGGTTTGCAAAACCTTCTCGAA 817
Query 813 CTGGATGTCTCCACGAATTCTCTGGAGACATTACCTGATTCCATCGGTTTACTGTCCAAA 872
|| ||||| |||||||||| | | ||||||||||| ||||| ||||||||| |||| |||
Sbjct 818 CTCGATGTTTCCACGAATTTTTTAGAGACATTACCCGATTCGATCGGTTTATTGTC-AAA 876
Query 873 CTAAAA-ATCCTGAATGTTTCGACTAACAAGCTCACATCCTTGCCTGACTCCATCTGCCG 931
| || || ||||||| || |||||| |||||| | || || || ||||||||||
Sbjct 877 GTTGAAGATTTTGAATGTCTCTTGTAACAAACTCACAACTTTACCAGATTCCATCTGCCA 936
Query 932 CTGTGGGTCGTTGGTTATCTTGGACGTGAGCTTCAACCGTCTCACCTACTTACCGACCAA 991
||||| || |||||| ||||||| | ||||| |||| ||||||||||||||| || ||
Sbjct 937 TTGTGGATCTTTGGTTGTCTTGGATGCGAGCTACAACAATCTCACCTACTTACCAACAAA 996
Query 992 CATCGG-TCCTGAGCTAGTGAATCTAGAAAAGCTCCTGGTTCAGTAT-AACAAGATCCGA 1049
||| || | | ||||||||||| |||| |||||| || | || | | ||||| ||| ||
Sbjct 997 CATTGGATTC-GAGCTAGTGAAAGTAGAGAAGCTCTTGATCCA-TCTCAACAAAATCAGA 1054
Query 1050 TCCTTCCCGACCAGTATAGGCGAAATGAGATCCCTAAAAC-ACCTCGACGCCCACTTCAA 1108
|| || || || || || |||||||||||| || | ||||||| || ||||||||
Sbjct 1055 TCATTACCAACTTCCATTGGTGAAATGAGATCCTTACG-CTACCTCGATGCACACTTCAA 1113
Query 1109 CGAACTTAACGGCCTTCCTGATTCTTTCGTGTTGCTCACAAATCTCGAGTAC-TTAAACC 1167
|||||| ||||| || || ||||||||| | ||||||| || ||||||||| |||| ||
Sbjct 1114 CGAACTCAACGGTCTCCCAAATTCTTTCGGGCTGCTCACGAACCTCGAGTACCTTAA-CC 1172
Query 1168 TAAGCAGCAACTTCAGTGATCTC-AAGGATCTCCCATTCT-CATTCGGCGAACTCATAAG 1225
| ||||| |||||||| |||||| ||| |||| || | || |||| ||||| ||||||||
Sbjct 1173 TGAGCAGTAACTTCAGCGATCTCCAAG-ATCTACC-TGCTTCATTTGGCGATCTCATAAG 1230
Query 1226 CCTCCAAGAACTCGACTTGAGTAACAACCAAATCCATGCCCTCCCTGACACTTTTGGCAC 1285
||||||||||||||||||||| |||||||| |||||| | || || ||| ||||||||||
Sbjct 1231 CCTCCAAGAACTCGACTTGAGCAACAACCAGATCCATTCTCTTCCAGACGCTTTTGGCAC 1290
Query 1286 ACT--TGATAGCCTGACCAAACTGAA-TGTGGATCAGAACCCGCTCGTCGTCCCACCCGA 1342
|| ||| | ||||||||||||||| | |||| || ||||||||||| ||||| || ||
Sbjct 1291 GCTCGTGA-A-CCTGACCAAACTGAACT-TGGACCAAAACCCGCTCGTGGTCCCGCCTGA 1347
Query 1343 GGAAGTGGTGAAGGAAGGTGTTGAAGCTGTGAAGACGTACATGGGTCAGAGAAGGATCAG 1402
|||||| ||||| |||| || || || || || | ||| |||||| ||||| || ||||
Sbjct 1348 GGAAGTCGTGAAACAAGGCGTGGATGCGGTTAAAATGTATATGGGTAAGAGATGGGTCAG 1407
Query 1403 TATGTTGgaagaagaagagaagaaga--aA-ATGGAGGAAGAGATGGAGCAGGCAAACGC 1459
|||||||||||| |||||||||| | || ||| |||| |||||||| ||| ||||| |
Sbjct 1408 TATGTTGGAAGAGGAAGAGAAGATGGCGAATATGAAGGATGAGATGGATCAGACAAACAC 1467
Query 1460 CGGGTGGCTCACACGAACCACATCGAAGCTGAAAACATATGTCGCAGATGTTTCAGAGTA 1519
|| |||||||| ||||||||||||||||||||||| ||||| | || || ||||||||
Sbjct 1468 CGATTGGCTCACCCGAACCACATCGAAGCTGAAAACGTATGTTACTGAGGTCTCAGAGTA 1527
Query 1520 TCTCGGATCAAATTCTCCTCGAGACCCTTACCTTGAAC-GACAGCTATGA 1568
||| || || ||||| ||| |||| ||||||||||| | | |||||||||
Sbjct 1528 TCTTGGCTCGAATTCGCCTAGAGATCCTTACCTTGACCAG-CAGCTATGA 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72295285010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5