BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11340.1
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904014 jgi|Araly1|904014|Al_scaffold_0003_1142 2128 0.0
Ahg487387 jgi|Araly1|487387|fgenesh2_kg.6__521__AT5G05890.1 115 9e-25
Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1 93.5 4e-18
> Ahg904014 jgi|Araly1|904014|Al_scaffold_0003_1142
Length=1344
Score = 2128 bits (1152), Expect = 0.0
Identities = 1282/1346 (95%), Gaps = 4/1346 (0%)
Strand=Plus/Plus
Query 24 ATGGAGACTAGAGAAACAAAACCAGTGATCTTTCTCTTCCCTTTCCCTTTACAAGGTCAC 83
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGACTAGAGAAACAAAACCAGTGATCTTTCTCTTCACTTTCCCTTTACAAGGTCAC 60
Query 84 TTAAACCCAATGTTTCAGCTCGCCAACATCTTCTTCAACAGAGGCTTCTCCATCACTGTG 143
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTAAACCCAATGTTTCAGCTCGCCAACATCTTCTTCAACAGAGGCTTTTCCATCACTGTG 120
Query 144 ATCCACACTGAGTTCAACTCTCCAAACTCTTCCAATTTCCCTCATTTCACTTTCGTATCC 203
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 121 ATCCACACTGAGTTCAACTCTCCAAACTCTTCCAATTTCCCTCACTTCACTTTCGTCTCC 180
Query 204 ATCCCCGATAGCTTGTCTGAACCTGAATCCTATCCCGATGTCATCGAGATTCTCCATGAC 263
|||| |||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 181 ATCCGCGATGGCTTGTCTGAACCCGAATCCTATCCTGATGTCATAGAGATTCTCCATGAC 240
Query 264 CTCAATTCCAAGTGTGTTGCTCCTTTTGGTGATTGCTTAAAGAAGCTTATATCTGAAGAA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CTCAATTCCAAGTGTGTTGCTCCTTTTGGTGATTGCTTAAAGAAGCTTATATCCGAAGAA 300
Query 324 CCAACAGCAGCTTGTGTGATTGTTGACGCTCTTTGGTACTTCACTCACGATTTAACCGAG 383
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 CCAACTGCAGCTTGTGTGATTGTTGACGCTCTTTGGTACTTCACTCACGATTTAACCCAG 360
Query 384 AAATTCAATTTCCCGAGGATTGTTCTCCGAACCGTTAACCTCTCAGCTTTCGTCGCTTTC 443
|||||| || |||||||||||||||| || || |||||||||||| ||||||||||||||
Sbjct 361 AAATTCGATATCCCGAGGATTGTTCTTCGGACGGTTAACCTCTCATCTTTCGTCGCTTTC 420
Query 444 TCAAAGTTTCATGTTTTACGAGAGAAAGGGTATCTTTCTTTACAAGAGACTAAGGCAGAC 503
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCAAAGTTTCATGTTTTACGAGAGAAAGGGTATCTTTCTTTACAAGAGACTCAGGCAGAC 480
Query 504 TCACCGGTTCCGGAGCTTCCGTATCTTAGAATGAAGGATCTTCCATGGTTCCAGACAGAA 563
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TCACCGGTTCCAGAGCTTCCGTATCTTAGAATGAAAGATCTTCCATGGTTCCAGACAGAA 540
Query 564 GATCCAAGATCAGGGGATAAGTTACAGATAGGTGTGATGAAGTCACTAAAGTCTTCCTCA 623
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 GATCCAAGATCAGGGGATAAGTTACAGAGAGGTGTGATGAAGTCACTAAAGTCTTCCTCA 600
Query 624 GGAATCATATTCAACGCCATTGAAGATCTTGAAACAGATCAGCTTGATGAAGCCCGCATA 683
||||| ||||||||||||||||||||||||||| | |||||||||||| |||| | ||||
Sbjct 601 GGAATTATATTCAACGCCATTGAAGATCTTGAATCTGATCAGCTTGATCAAGCACTCATA 660
Query 684 GAATTCCCAGTTCCACTCTTCTGTATTGGACCCTTTCACAGGTACGTTTCAGCTTCATCC 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 GAATTCCCAGTTCCACTCTTCTGTATTGGACCCTTTCACAGGTACGTTTCAGCTTCATTC 720
Query 744 AGTAGCTTACTTGCACACGACATGACTTGTCTCTCCTGGTTAGACAAGCAAGCAACAAAT 803
||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 721 AGTAGCTTAATTGCACATGACATGACTTGTCTCTCTTGGTTAGACAAGCAAGAAACAAAT 780
Query 804 TCCGTAATCTACGCAAGTCTTGGAAGCATTGCTTCGATCGATGAATCTGAATTCTTGGAG 863
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 781 TCCGTAATCTACGCAAGTCTTGGAAGCATTGCCTCGATAGACGAATCTGAATTCTTGGAG 840
Query 864 ATTGCTTGGGGTCTAAGAAACAGCAACCAACCTTTTCTATGGGTGGTTAGACCCGGTTTA 923
|| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 ATCGCTTGGGGTTTAAGAAACAGCAACCAACCTTTTCTATGGGTGGTTAGACCTGGTTTG 900
Query 924 ATCCACGGGAAAGAATGGATCGAGATTCTGCCTAAAGGGTTCATCGAAAATCTCGAGGGC 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATCCACGGGAAAGAATGGATCGAGATTCTGCCTAAAGGGTTCATCGAAAATCTCGAGGGC 960
Query 984 CGGGGTAAAATAGTGAAATGGGCACCTCAGCCTGAAGTTTTAGCTCACCGTGCAACAGGC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGGGGTAAAATAGTGAAATGGGCACCTCAGCCTGAAGTTTTAGCTCACCGTGCAACAGGC 1020
Query 1044 GGATTCTTAACACATTGTGGATGGAACTCAACACTTGAGGGCATATGTGAAGCTATACCA 1103
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1021 GGATTCTTAACACATTGTGGATGGAACTCGACGCTTGAGGGCATATGTGAAGCTATACCA 1080
Query 1104 ATGATATGCAGACCATCTTTTGGGGACCAGAGGGTGAATGCTAGATACATTAACGATGTT 1163
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1081 ATGATATGCAAACCATCTTTTGGGGACCAGAGGGTGAATGCTAGGTACATTACCGATGTT 1140
Query 1164 TGGAAGATCGGATTGCATTTGGAAAACAAGGTAGAGAGA-CTAGTGATCGAAAACGCGGT 1222
||||||||||||||||||||||| |||||| |||||||| | | ||| |||| ||||||
Sbjct 1141 TGGAAGATCGGATTGCATTTGGAGAACAAGATAGAGAGAACAAA-GATTGAAAGCGCGGT 1199
Query 1223 TAGAACACTAATGACGAGCTCGGAAGGGGAAGAGATCCGCAAGAGG-ATTATGCCCATGA 1281
||||||||||||||||| ||| ||||| |||||||||||||| ||| || ||||| ||||
Sbjct 1200 TAGAACACTAATGACGACCTCAGAAGGAGAAGAGATCCGCAA-AGGGATCATGCCAATGA 1258
Query 1282 AGGAAACTGTTGAACAATGCCTTAAGCTTGGAGGTTCATCATTTCGGAATCTCGAAAACT 1341
|||||| || |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1259 AGGAAATTGCTGAACAATGCCTAAAGATTGGAGGTTCATCATTTCGGAATCTCGAAAACT 1318
Query 1342 TAATTGCTTATATATTGTCTTTCTAA 1367
||||||||||||||||||||||||||
Sbjct 1319 TAATTGCTTATATATTGTCTTTCTAA 1344
> Ahg487387 jgi|Araly1|487387|fgenesh2_kg.6__521__AT5G05890.1
Length=1470
Score = 115 bits (62), Expect = 9e-25
Identities = 295/404 (73%), Gaps = 30/404 (7%)
Strand=Plus/Plus
Query 708 ATTGGACCCTTTCACAGGTACGTTT-CAGCTTCATCCAGTAGCTTACTTGCACA--CGAC 764
|||||||| | |||||| || ||| ||||||| || |||||||| | |||| ||||
Sbjct 733 ATTGGACCATCTCACAGCCAC-TTTCCAGCTTCGTCTAGTAGCTT--GTCCACACCCGAC 789
Query 765 -ATGACTTGTC-TCTCC-TGGTTAGACAAGCAAGCA-ACAAATTCCGTAATCTACGCAAG 820
| |||||| | | ||| ||||||||||| |||||| ||| | ||||| || |||| ||
Sbjct 790 GA-GACTTG-CAT-TCCATGGTTAGACAAACAAGCAGACAGA-TCCGTGATTTACGTGAG 845
Query 821 TCT-TGGAAGCATTGCT-TCGATCGA-TGAATCTGAATTCTTGGAGATTGCTTGGGGTCT 877
| | || ||||| | | | ||| | ||||| || || |||||||||||||||||||
Sbjct 846 T-TACGGGAGCATCG-TGACTATC-AGCGAATCAGAGTTAATGGAGATTGCTTGGGGTCT 902
Query 878 AAGAAACAGCAACCAACCTTTTCTATG--GGTGGTTA-GACCCGGTTTAATCCACGGGAA 934
|||||||||| |||||||||| || || ||| || | | |||| | ||| || |
Sbjct 903 AAGAAACAGCGACCAACCTTT-CT-TGTTGGTCGT-ACGGGTTGGTTCAGTCCGTGGCAC 959
Query 935 AGAATGGATCGAGATTCTGCCTAAAGGGTTCATCGAAAATCTCGAGG-GCCGGGGTAAA- 992
|||||||||||||| | || ||| | |||||| ||| || | | | ||| |||
Sbjct 960 AGAATGGATCGAGACAATCCCGGAAGAGATCATCGCAAAGCTTAATGAGAAGGG--AAAG 1017
Query 993 ATAGTGAAATGGGCACCTCAGCCTGAAGTTTTAGCTCACCGTGCAACAGGCGGATTCTTA 1052
|||||||||||||| || || | || ||| || || || || | || ||||||||
Sbjct 1018 ATAGTGAAATGGGCTCCGCAACAAGACGTTCTAAAGCATCGAGCCATTGGGGGATTCTTG 1077
Query 1053 ACACATTGTGGATGGAACTCAACACTTGAGGGCATATGTGAAGC 1096
|||||| ||| |||| ||| || ||||| | | ||||||||
Sbjct 1078 ACACATAATGGTTGGAGCTCGACGGTTGAGAGTGTTTGTGAAGC 1121
> Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1
Length=1356
Score = 93.5 bits (50), Expect = 4e-18
Identities = 151/196 (77%), Gaps = 22/196 (11%)
Strand=Plus/Plus
Query 711 GGACCCTT-TCACAGGTACGTT-TCA-GCTTCATCCAGTAGCTTACTTGCACA--CGAC- 764
||| |||| |||||| ||| || || || ||||| |||||||| || |||| |||
Sbjct 718 GGA-CCTTCTCACAGCTAC-TTCCCAGGC-TCATCTAGTAGCTT-GTT-CACAGTGGACG 772
Query 765 ATGACTTGTC-TCTCC-TGGTTAGACAAGCAAGCA-ACAAATTCCGTAATCTACGCAAGT 821
| ||||| | | ||| |||||||||||||||| | ||||| ||||| || |||| |||
Sbjct 773 A-CACTTG-CAT-TCCATGGTTAGACAAGCAAGAAGACAAA-TCCGTGATTTACGTGAGT 828
Query 822 CTT-GGAAGCATTGCTTCGA-TCGATGAATCTGAATTCTTGGAGATTGCTTGGGGTCTAA 879
|| || ||||| | | | | | ||| | || ||| |||||||||||||||||||||
Sbjct 829 -TTCGGGAGCATCACGACCATTAG-CGAAGCAGAGTTCATGGAGATTGCTTGGGGTCTAA 886
Query 880 GAAACAGCAACCAACC 895
||||||||||||||||
Sbjct 887 GAAACAGCAACCAACC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5