BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11350.1

Length=1080
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904015 jgi|Araly1|904015|Al_scaffold_0003_1143                    178    8e-44
  Ahg930560 jgi|Araly1|930560|scaffold_303017.1                        128    8e-29
  Ahg335936 jgi|Araly1|335936|fgenesh1_pg.C_scaffold_1002501          65.8    6e-10


> Ahg904015 jgi|Araly1|904015|Al_scaffold_0003_1143
Length=1557

 Score =  178 bits (96),  Expect = 8e-44
 Identities = 147/169 (87%), Gaps = 13/169 (8%)
 Strand=Plus/Plus

Query  1    ATGAGCATGACGCTTAGTCTTCAGCGACACGCAAAGAGAATCCTCGCTTACAGTAACAGG  60
            |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG  60

Query  61   CCTCGATTCTTCTGCTCCTACAGAAACGGAACGCTATCG---------ACGAACCAAACT  111
            |||||| ||||||||||||||||||||||||| ||||||         ||||||||||||
Sbjct  61   CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT  120

Query  112  CTGCATG-GTCGAATCGAAGCTGCTT-TAGATCAGAAAGCAGAAATCAC  158
            |||| || ||||||||||| | |||  | ||||| ||||||| ||||||
Sbjct  121  CTGC-TGAGTCGAATCGAATCGGCTGCT-GATCAAAAAGCAGCAATCAC  167


> Ahg930560 jgi|Araly1|930560|scaffold_303017.1
Length=2258

 Score =  128 bits (69),  Expect = 8e-29
 Identities = 116/139 (83%), Gaps = 2/139 (1%)
 Strand=Plus/Plus

Query  447  TAAGGTCGACGAGAGTCTGCGAGAGATGAAGGAGAGCAACATTGATCTCGATCGTCTCAC  506
            ||||||||| |||| |||||||||||||||||||||||||||| | || ||| |   |||
Sbjct  564  TAAGGTCGATGAGATTCTGCGAGAGATGAAGGAGAGCAACATTAAGCTTGATAGAGACAC  623

Query  507  CGTGAACAAAGCTTTGCGAGTGTACGCTGCTGCATCTGATGTGGC-AGCAATGGAGAGGT  565
            ||||||||| ||||||||||| ||||||| || | || |  | || | ||||||||| ||
Sbjct  624  CGTGAACAATGCTTTGCGAGTATACGCTGATGTAACTCACATAGCGA-CAATGGAGAAGT  682

Query  566  TTCTGGCTGATTGGGAAGG  584
            |||| ||||| ||||||||
Sbjct  683  TTCTTGCTGAATGGGAAGG  701


> Ahg335936 jgi|Araly1|335936|fgenesh1_pg.C_scaffold_1002501
Length=597

 Score = 65.8 bits (35),  Expect = 6e-10
 Identities = 48/54 (89%), Gaps = 1/54 (2%)
 Strand=Plus/Plus

Query  256  ATTGAAAACGTTTTAGGTTTGGAAGAAGCAGAGAAGTACTTCGAGAGCAT-CCC  308
            ||||| ||||||||||||||||||||||||||||| | |||||| | ||| |||
Sbjct  46   ATTGACAACGTTTTAGGTTTGGAAGAAGCAGAGAAATTCTTCGAAACCATTCCC  99



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40219677435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5