BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11380.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904015 jgi|Araly1|904015|Al_scaffold_0003_1143 1493 0.0
> Ahg904015 jgi|Araly1|904015|Al_scaffold_0003_1143
Length=1557
Score = 1493 bits (808), Expect = 0.0
Identities = 1339/1588 (84%), Gaps = 66/1588 (4%)
Strand=Plus/Plus
Query 1 ATGAGCATGAGGCATAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60
Query 61 CCTCGATTTTTCTGCTCCTACACCAACGTAACACTATCGTCTCCGGCGACGAACCAAACT 120
|||||| | ||||||||||||| |||| ||| ||||||||||||| |||||||||||||
Sbjct 61 CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT 120
Query 121 CTGCAGAGTCGGATCGAAGCGGCTTCACATCAGAAAGCAGAAATCACAACGGTGCTTGAG 180
|||| |||||| |||||| ||||| | |||| ||||||| |||||| ||||||||||||
Sbjct 121 CTGCTGAGTCGAATCGAATCGGCTGCTGATCAAAAAGCAGCAATCACTACGGTGCTTGAG 180
Query 181 CAATGGCTACAGCAACAACAACAACAGGGGAAGCAG---TTAAACCCTTCGTTATT-AAG 236
||||| | | ||||| ||| |||| ||||| || |||||||||||||| | ||
Sbjct 181 GAATGG--AGA-CAACAGCAAAAACATGGGAATCATCAATTAAACCCTTCGTTGGTGAA- 236
Query 237 AGGAATCGTCGAGAAGCTC-A-GAAGTTCTAACCGACCTCGCCAAGCCCTAGAGGTATCA 294
||| || |||||||||||| | || ||| || || ||| ||||||||||||||||||
Sbjct 237 AGGTATAGTCGAGAAGCTCCACGA--TTCCAAGAGATATCGTCAAGCCCTAGAGGTATCA 294
Query 295 GACTGGATGGTCGAACAAAAGATGTACAATCTCC--C-GGAAGA-CTTCTCAGCTAGATT 350
|||||||| | ||| ||||||| | ||||| || | |||||| || | ||| | ||||
Sbjct 295 AACTGGATGATTGAAAAAAAGATCTGCAATCACCTTCCGGAAGATCT-CGCAGTTCGATT 353
Query 351 TCATCTGACTGAGAAGGTTTTAA-ATTTGGAAGAAGCAGAGAAGTTCTTTGAGAGCATCC 409
|||||||| |||||| ||||| ||| | ||||||||||||||||||| | |||||||
Sbjct 354 TCATCTGATTGAGAACGTTTTGGGATTAG-AAGAAGCAGAGAAGTTCTTCCAAAGCATCC 412
Query 410 CGGAGAATATGAGAT-TCGAGTCAATGTACAATTCTCTATTAA-GAAGTTACGCAAGACA 467
|||||||| ||| | | || || || |||| |||||| |||| || ||||||||| | |
Sbjct 413 CGGAGAATCTGAAAGGT-GAATCTATCTACACTTCTCTGTTAAAGA-GTTACGCAA-A-A 468
Query 468 ATCCGGAGAAAAAGCTCTGAAG-AAAGCCGAATCTGTTTTCAAGAAGATGAAGAAGCTAG 526
|| ||||||| | || | | | |||||||||| | |||| ||||||||| ||||||||
Sbjct 469 -TCGGGAGAAATATCTTT-ACGTAAAGCCGAATATACTTTCGAGAAGATGAGGAAGCTAG 526
Query 527 GGT-TGCTCTTGAGACCTTCACCGTACAACTCGATGA-CATCACTCTATAGCTCTCTCGG 584
| | ||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||| |
Sbjct 527 G-TATGCTCTTGAGACCATCACCTTACAACTCCATGGTC-TCACTCTACAGCTCTCTCAG 584
Query 585 AAACAGAGATAAAGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACGTTGAGCTCGA 644
||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 585 AAACAGAAATAAGGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACCTTGAGCTCGA 644
Query 645 TAATGTCACCGTGAACAACGCTTTGCGAGTATACGCTGCTGTATCTGATGTAGCGACAAT 704
|| | |||||||||||||||||| ||||||||||||||||| | |||||| ||||||||
Sbjct 645 TAGTCCCACCGTGAACAACGCTTTACGAGTATACGCTGCTGTTTGTGATGTTGCGACAAT 704
Query 705 GGACAAGTTTCTAGCTGATAGGAAAG-AGATTACAAGGCTTGA-TGGGCTCACAATGCTT 762
||||||||||||||||||| |||| | | ||||||| |||||| ||| ||||||| |||
Sbjct 705 GGACAAGTTTCTAGCTGATTGGAATGCA-ATTACAACGCTTGAGTGG-CTCACAACACTT 762
Query 763 GCGATGGCAAAGGCTTAT-GAACTCATGAGCCTATATGGTGAAGCAGGAGAGATAGAAGA 821
| ||||||||||||||| || ||||| || ||||||||||||||||| |||| ||| ||
Sbjct 763 GAAATGGCAAAGGCTTATAGA-CTCATAAGGCTATATGGTGAAGCAGGGGAGAGAGATGA 821
Query 822 TGTTCACCGTGTATGGGACAAGTACAAGG-CGACAAGACAGAAGGATAATGAAGAATTTC 880
|||| ||||| |||||||| ||||||| | |||| | ||||||| ||||||| |||||
Sbjct 822 TGTTTACCGTATATGGGACTTGTACAAGAAC-ACAAAAGAGAAGGACAATGAAGGATTTC 880
Query 881 GAACTTTGATTGGTTCTCTCTTGAAGCTTGGTGATACCAAAGGAGCAGAGAAGATATACT 940
|| ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 881 GAGCTTTGATTGGTTCTCTCTTGAAGCTTGATGATATCAACGGAGCAGAGAAGATATACT 940
Query 941 ACAATGAGTGGGAGTGCTCCGGTCTTGAGTTTGATAACCGAATCCCCGA-TATGTTGGTG 999
|| |||||||||||| ||| ||||||||||| ||| ||||||||| || ||||||| ||
Sbjct 941 ACGATGAGTGGGAGTCCTCTGGTCTTGAGTTCGATCTCCGAATCCC-GACTATGTTGATG 999
Query 1000 TCGGGTTATCGCGAAAAGGGAATGGTGATGAAGGCAGATAAACTGGTGAACAAGACTTTG 1059
|| |||||||||| |||||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 1000 TCTGGTTATCGCGCAAAGGGAATGGTGAAGAAGGCAGATAAACTATTGTACAAGACTATG 1059
Query 1060 TGGA-TCAGAGGATTGGCTACACCAATCACTCTGTT-GCTGGAAGAAATGGAT-AAAAAG 1116
|| | | || ||||| || | | || | || || | || | ||| ||| | |||||
Sbjct 1060 AAGAATAAAAG-ATTGGTTATATCGATTAATCCATTTGTTG-AGGAATTGG-TGAAAAAT 1116
Query 1117 GGGAATAAAGTGA-GTCCGCCGGGCTTGAGAGACCTCATCAAGAATCTACGTGATTCAAA 1175
| || |||||| | ||| ||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1117 AGAAACCAAGTGAAG-CCGTCGGACTTGAGAGACCTCATCAAGAATCTGCGTGACTCAAA 1175
Query 1176 TCAGTTGTCCAAAGCACTTGAGGCATCAACATGGATGTGTCaaaaaaaGGTGTTT-AATC 1234
||| || || |||||||||||||||||||||||||||||| |||||| || |||| ||||
Sbjct 1176 TCAATTATCTAAAGCACTTGAGGCATCAACATGGATGTGTGAAAAAAGGG-GTTTTAATC 1234
Query 1235 TCTTTTC-AGAAGATTATGCAACAAGGCTTCATCTGACTGAGAAAGTGTTGGGTTTGGAG 1293
| ||||| |||||||||||||| ||| ||||||||| ||||||||||||||| ||||||
Sbjct 1235 T-TTTTCCAGAAGATTATGCAATTAGGTTTCATCTGATTGAGAAAGTGTTGGGATTGGAG 1293
Query 1294 GAAGCAGAGAACTTTTTCGAAAGCAGCATCCCGGAGAATATGAAAGATTACTCTGTCTAC 1353
||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 1294 GAAGCAGAGAAGTTTTTCGAAAGCAGCATCCCGAAGAACATGAAGGATTACTCTGTCTAC 1353
Query 1354 GATACACTCTTAAGCT-GTTATGCAAGATCT-AGCAACACTCAAAGT-AAAGCTGAAGCC 1410
||||||||||||| || || | |||||||| | ||| |||| | || ||||| |||| |
Sbjct 1354 GATACACTCTTAACCTCGT-ACACAAGATCTGA-CAAAACTCTA-GTCAAAGCGGAAGGC 1410
Query 1411 GTTTTCGAGAAGATGAGAGAGCTAGGTTTACAATCCAAACTTTCCCCATTCAACTCGTTG 1470
||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 1411 GTTTTCGAGAAGATGAGAGAGCTAGGTTTCCTCTCAAAACTTTCCCCATTCAACTCGATA 1470
Query 1471 ATATCTCTCTACAGTGGGCAAGGGAAACTAAGTGTGGTCAATATA-CTTCTATGTGATAT 1529
||||||||||||| || |||| ||||||||||| |||||||| | ||||||||||||||
Sbjct 1471 ATATCTCTCTACATTGAGCAAAGGAAACTAAGTAAGGTCAATA-AGCTTCTATGTGATAT 1529
Query 1530 GAAGCA---TAAGA-ATATAGAGCCTGA 1553
|||||| ||| | |||||||||||||
Sbjct 1530 GAAGCAGAATAATATATATAGAGCCTGA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5