BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11380.1 Length=1626 Score E Sequences producing significant alignments: (Bits) Value Ahg904015 jgi|Araly1|904015|Al_scaffold_0003_1143 1493 0.0 > Ahg904015 jgi|Araly1|904015|Al_scaffold_0003_1143 Length=1557 Score = 1493 bits (808), Expect = 0.0 Identities = 1339/1588 (84%), Gaps = 66/1588 (4%) Strand=Plus/Plus Query 1 ATGAGCATGAGGCATAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60 Query 61 CCTCGATTTTTCTGCTCCTACACCAACGTAACACTATCGTCTCCGGCGACGAACCAAACT 120 |||||| | ||||||||||||| |||| ||| ||||||||||||| ||||||||||||| Sbjct 61 CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT 120 Query 121 CTGCAGAGTCGGATCGAAGCGGCTTCACATCAGAAAGCAGAAATCACAACGGTGCTTGAG 180 |||| |||||| |||||| ||||| | |||| ||||||| |||||| |||||||||||| Sbjct 121 CTGCTGAGTCGAATCGAATCGGCTGCTGATCAAAAAGCAGCAATCACTACGGTGCTTGAG 180 Query 181 CAATGGCTACAGCAACAACAACAACAGGGGAAGCAG---TTAAACCCTTCGTTATT-AAG 236 ||||| | | ||||| ||| |||| ||||| || |||||||||||||| | || Sbjct 181 GAATGG--AGA-CAACAGCAAAAACATGGGAATCATCAATTAAACCCTTCGTTGGTGAA- 236 Query 237 AGGAATCGTCGAGAAGCTC-A-GAAGTTCTAACCGACCTCGCCAAGCCCTAGAGGTATCA 294 ||| || |||||||||||| | || ||| || || ||| |||||||||||||||||| Sbjct 237 AGGTATAGTCGAGAAGCTCCACGA--TTCCAAGAGATATCGTCAAGCCCTAGAGGTATCA 294 Query 295 GACTGGATGGTCGAACAAAAGATGTACAATCTCC--C-GGAAGA-CTTCTCAGCTAGATT 350 |||||||| | ||| ||||||| | ||||| || | |||||| || | ||| | |||| Sbjct 295 AACTGGATGATTGAAAAAAAGATCTGCAATCACCTTCCGGAAGATCT-CGCAGTTCGATT 353 Query 351 TCATCTGACTGAGAAGGTTTTAA-ATTTGGAAGAAGCAGAGAAGTTCTTTGAGAGCATCC 409 |||||||| |||||| ||||| ||| | ||||||||||||||||||| | ||||||| Sbjct 354 TCATCTGATTGAGAACGTTTTGGGATTAG-AAGAAGCAGAGAAGTTCTTCCAAAGCATCC 412 Query 410 CGGAGAATATGAGAT-TCGAGTCAATGTACAATTCTCTATTAA-GAAGTTACGCAAGACA 467 |||||||| ||| | | || || || |||| |||||| |||| || ||||||||| | | Sbjct 413 CGGAGAATCTGAAAGGT-GAATCTATCTACACTTCTCTGTTAAAGA-GTTACGCAA-A-A 468 Query 468 ATCCGGAGAAAAAGCTCTGAAG-AAAGCCGAATCTGTTTTCAAGAAGATGAAGAAGCTAG 526 || ||||||| | || | | | |||||||||| | |||| ||||||||| |||||||| Sbjct 469 -TCGGGAGAAATATCTTT-ACGTAAAGCCGAATATACTTTCGAGAAGATGAGGAAGCTAG 526 Query 527 GGT-TGCTCTTGAGACCTTCACCGTACAACTCGATGA-CATCACTCTATAGCTCTCTCGG 584 | | ||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||| | Sbjct 527 G-TATGCTCTTGAGACCATCACCTTACAACTCCATGGTC-TCACTCTACAGCTCTCTCAG 584 Query 585 AAACAGAGATAAAGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACGTTGAGCTCGA 644 ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 585 AAACAGAAATAAGGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACCTTGAGCTCGA 644 Query 645 TAATGTCACCGTGAACAACGCTTTGCGAGTATACGCTGCTGTATCTGATGTAGCGACAAT 704 || | |||||||||||||||||| ||||||||||||||||| | |||||| |||||||| Sbjct 645 TAGTCCCACCGTGAACAACGCTTTACGAGTATACGCTGCTGTTTGTGATGTTGCGACAAT 704 Query 705 GGACAAGTTTCTAGCTGATAGGAAAG-AGATTACAAGGCTTGA-TGGGCTCACAATGCTT 762 ||||||||||||||||||| |||| | | ||||||| |||||| ||| ||||||| ||| Sbjct 705 GGACAAGTTTCTAGCTGATTGGAATGCA-ATTACAACGCTTGAGTGG-CTCACAACACTT 762 Query 763 GCGATGGCAAAGGCTTAT-GAACTCATGAGCCTATATGGTGAAGCAGGAGAGATAGAAGA 821 | ||||||||||||||| || ||||| || ||||||||||||||||| |||| ||| || Sbjct 763 GAAATGGCAAAGGCTTATAGA-CTCATAAGGCTATATGGTGAAGCAGGGGAGAGAGATGA 821 Query 822 TGTTCACCGTGTATGGGACAAGTACAAGG-CGACAAGACAGAAGGATAATGAAGAATTTC 880 |||| ||||| |||||||| ||||||| | |||| | ||||||| ||||||| ||||| Sbjct 822 TGTTTACCGTATATGGGACTTGTACAAGAAC-ACAAAAGAGAAGGACAATGAAGGATTTC 880 Query 881 GAACTTTGATTGGTTCTCTCTTGAAGCTTGGTGATACCAAAGGAGCAGAGAAGATATACT 940 || ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 881 GAGCTTTGATTGGTTCTCTCTTGAAGCTTGATGATATCAACGGAGCAGAGAAGATATACT 940 Query 941 ACAATGAGTGGGAGTGCTCCGGTCTTGAGTTTGATAACCGAATCCCCGA-TATGTTGGTG 999 || |||||||||||| ||| ||||||||||| ||| ||||||||| || ||||||| || Sbjct 941 ACGATGAGTGGGAGTCCTCTGGTCTTGAGTTCGATCTCCGAATCCC-GACTATGTTGATG 999 Query 1000 TCGGGTTATCGCGAAAAGGGAATGGTGATGAAGGCAGATAAACTGGTGAACAAGACTTTG 1059 || |||||||||| |||||||||||||| ||||||||||||||| || |||||||| || Sbjct 1000 TCTGGTTATCGCGCAAAGGGAATGGTGAAGAAGGCAGATAAACTATTGTACAAGACTATG 1059 Query 1060 TGGA-TCAGAGGATTGGCTACACCAATCACTCTGTT-GCTGGAAGAAATGGAT-AAAAAG 1116 || | | || ||||| || | | || | || || | || | ||| ||| | ||||| Sbjct 1060 AAGAATAAAAG-ATTGGTTATATCGATTAATCCATTTGTTG-AGGAATTGG-TGAAAAAT 1116 Query 1117 GGGAATAAAGTGA-GTCCGCCGGGCTTGAGAGACCTCATCAAGAATCTACGTGATTCAAA 1175 | || |||||| | ||| ||| |||||||||||||||||||||||| ||||| ||||| Sbjct 1117 AGAAACCAAGTGAAG-CCGTCGGACTTGAGAGACCTCATCAAGAATCTGCGTGACTCAAA 1175 Query 1176 TCAGTTGTCCAAAGCACTTGAGGCATCAACATGGATGTGTCaaaaaaaGGTGTTT-AATC 1234 ||| || || |||||||||||||||||||||||||||||| |||||| || |||| |||| Sbjct 1176 TCAATTATCTAAAGCACTTGAGGCATCAACATGGATGTGTGAAAAAAGGG-GTTTTAATC 1234 Query 1235 TCTTTTC-AGAAGATTATGCAACAAGGCTTCATCTGACTGAGAAAGTGTTGGGTTTGGAG 1293 | ||||| |||||||||||||| ||| ||||||||| ||||||||||||||| |||||| Sbjct 1235 T-TTTTCCAGAAGATTATGCAATTAGGTTTCATCTGATTGAGAAAGTGTTGGGATTGGAG 1293 Query 1294 GAAGCAGAGAACTTTTTCGAAAGCAGCATCCCGGAGAATATGAAAGATTACTCTGTCTAC 1353 ||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct 1294 GAAGCAGAGAAGTTTTTCGAAAGCAGCATCCCGAAGAACATGAAGGATTACTCTGTCTAC 1353 Query 1354 GATACACTCTTAAGCT-GTTATGCAAGATCT-AGCAACACTCAAAGT-AAAGCTGAAGCC 1410 ||||||||||||| || || | |||||||| | ||| |||| | || ||||| |||| | Sbjct 1354 GATACACTCTTAACCTCGT-ACACAAGATCTGA-CAAAACTCTA-GTCAAAGCGGAAGGC 1410 Query 1411 GTTTTCGAGAAGATGAGAGAGCTAGGTTTACAATCCAAACTTTCCCCATTCAACTCGTTG 1470 ||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | Sbjct 1411 GTTTTCGAGAAGATGAGAGAGCTAGGTTTCCTCTCAAAACTTTCCCCATTCAACTCGATA 1470 Query 1471 ATATCTCTCTACAGTGGGCAAGGGAAACTAAGTGTGGTCAATATA-CTTCTATGTGATAT 1529 ||||||||||||| || |||| ||||||||||| |||||||| | |||||||||||||| Sbjct 1471 ATATCTCTCTACATTGAGCAAAGGAAACTAAGTAAGGTCAATA-AGCTTCTATGTGATAT 1529 Query 1530 GAAGCA---TAAGA-ATATAGAGCCTGA 1553 |||||| ||| | ||||||||||||| Sbjct 1530 GAAGCAGAATAATATATATAGAGCCTGA 1557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60944392000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5