BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11397.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478475 jgi|Araly1|478475|fgenesh2_kg.3__1176__AT3G11397.1 1112 0.0
Ahg487402 jgi|Araly1|487402|fgenesh2_kg.6__536__AT5G05987.1 645 0.0
> Ahg478475 jgi|Araly1|478475|fgenesh2_kg.3__1176__AT3G11397.1
Length=943
Score = 1112 bits (602), Expect = 0.0
Identities = 753/822 (92%), Gaps = 25/822 (3%)
Strand=Plus/Plus
Query 1 ACACAAAACCTGAGAACAAAAACATC--CGCAGAATCGA-TATCCCCAG-AATCACTACT 56
||||||||||||||||| |||||||| | ||||||| | || | | || ||| | | |
Sbjct 1 ACACAAAACCTGAGAACCAAAACATCAGCACAGAATC-ACTA-CTCTAGAAAT-TCGAAT 57
Query 57 CTACAAATTCGAATCCAAAGTTCAAACCCTATTCTTCGATTTTCGTAGAGCAGATTATTG 116
| |||||| ||||| ||||| | | |||||||| |||| ||||||||||||||
Sbjct 58 C-CCAAATTAAAATCCCAAGTT----CGTTCTTCTTCGA-TTTCACAGAGCAGATTATTG 111
Query 117 TTTCCCTTTA-GGTGTCTCCATAGTTTCTG-AAGAGAGAAGGATGGATTGGGACAGCGTT 174
| | | ||| |||||| | |||||| || ||||||| | |||||||||||||||||||
Sbjct 112 TAT--C-TTATTGTGTCTTCGTAGTTTTTGAAAGAGAG-A-GATGGATTGGGACAGCGTT 166
Query 175 GCTGCTGAGGATGTGATTGAGGCGTTAAGAGAGGTTGAATGGTCGGCGAGTCCTCGTTCC 234
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 167 GCTGCCGAGGATGTGATCGAGGCGTTAAGAGAGGTCGAATGGTCGGCGAGTCCTCGTTCC 226
Query 235 TTGGCCGAGTTCTTCTCCAGATTCGCGTTTCCTCGCTCTTTCTCTAAATGGATGAGCCGT 294
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 227 TTGGCCGAGTTCTTCTCCAGATTCGCTTTTCCTCGCTCTTTCTCTAAATGGATGAGCCGT 286
Query 295 CTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCATCCTCTTCG-TTTTCGTTCT 353
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 287 CTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCATCCTCTT-GATTTTCGTTCT 345
Query 354 GGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTGCTGCTCTTACAGCTTTAAG 413
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 346 GGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTGCTGCTATTACAGCTTTAAG 405
Query 414 CTTAGCTTTCCTAAACGACAGTTTTGCAGCTACTTTTAATGAGAAGATGATCCGGACCAT 473
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTTAGCTTTCCTTAACGACAGTTTTGCAGCTACTTTTAATGAGAAGATGATCCGGACCAT 465
Query 474 TAGGCATTTCTCGCCACATTTAGCTGCAAAGATGAGGCCTCCCCACATGCCTGTCATTCG 533
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 466 TAGGCATATCTCGCCACATTTAGCTGCCAAGATGAGGCCTCCCCACATGCCTGTCATTCG 525
Query 534 TGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGCCAACCACGTTTGGTATTCGT 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 526 TGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGCCAACCTCGTTTGGTATTCGT 585
Query 594 CTT-ACTTGGCTTAACCGCCAGTTTTGTCCTGTGGTTTACTTCATGTGGTTTGTTATGGG 652
|| | |||||||||||||||||||||| |||||||| || || || |||||||||||||
Sbjct 586 GTTGA-TTGGCTTAACCGCCAGTTTTGTTCTGTGGTTCACGTCCTGCGGTTTGTTATGGG 644
Query 653 TCCTCTATGCACTTACCACTGCCCTTCTCATGATACTTCTTCATGCAAGCCTGAGAACTC 712
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 645 TCCTCTATGCATTTACCACTGCCATTCTCATGATACTTCTTCACGCAAGCCTGAGAACTC 704
Query 713 CAAACCTCAAGGCCCGCTTGAACACATTCCGTGAAGAATTCAGGGCTGTCTGGCGTAACT 772
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAAACCTCAAGGCACGCTTGAACACATTCCGTGAAGAATTCAGGGCTGTCTGGCGTAACT 764
Query 773 ACAGCGAACTTTAAAGTCAACATAAAGCATTGATTCGATCTT 814
|||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct 765 ACAGCGAACTCTAA-GTCAACAGGAAGCATTGATTGGATCTT 805
Score = 143 bits (77), Expect = 3e-33
Identities = 125/146 (86%), Gaps = 11/146 (8%)
Strand=Plus/Plus
Query 856 GACATGAACTCCAATTCCTT-CATCATGTGCAC-AA-ACAATCGCAGTTATTCTTGTCTT 912
||||||||||||||| |||| |||||||||||| || ||||| ||||||||| |||||||
Sbjct 806 GACATGAACTCCAATGCCTTCCATCATGTGCACAAACACAATGGCAGTTATTATTGTCTT 865
Query 913 CCAGTAGTAAGCTAGTAAATTATAAGGCCACTGGTCTGGTTACAGATGCGGCTCTTTGTT 972
| |||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 866 CTAGTAGTAAGC--------TATAAGGCCACTTATCTGATTACAGATGCGGCTCTTTGTT 917
Query 973 CTAGTTAGTTGACTAGAACTACAAGG 998
||||||| || |||||||| ||||||
Sbjct 918 CTAGTTAATTAACTAGAACCACAAGG 943
> Ahg487402 jgi|Araly1|487402|fgenesh2_kg.6__536__AT5G05987.1
Length=971
Score = 645 bits (349), Expect = 0.0
Identities = 550/645 (85%), Gaps = 21/645 (3%)
Strand=Plus/Plus
Query 157 ATGGATTGGGACAGCGTTGCTGCTGAGGATGTGATTGAGGCGTTAAGAGAGGTTGAATGG 216
||||||||||||| ||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 68 ATGGATTGGGACAACGTAGCTGCTGAGGATGTGATTGAGGCGTTGAGAGAAGTCGAATGG 127
Query 217 TCGGCGAGTCCTCGTTC-CTTGGCCGAGTTCTTCTCCAGATTCGCGTTTCCTCGCTCTTT 275
||| || ||||||||| |||| |||||||||||| |||||||| || |||||||||||
Sbjct 128 TCGACGCCTCCTCGTTCGTTTGG-CGAGTTCTTCTCTAGATTCGCATTCCCTCGCTCTTT 186
Query 276 CTCTAAATGGATGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCAT 335
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 CTCTAAATGGAAGAGCCGCCTCAAATGCAATCTCTACTACTATAGGACGAATTACTTTAT 246
Query 336 CCTCTTCG-TTTTCGTTCTGGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTG 394
| | | | ||||||||||||||||||| ||| | || |||||||||| ||| | ||||
Sbjct 247 CTTGGT-GATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGGCTATTGTGGGTG 305
Query 395 CTGCTCTTACAGCTTTAAGCT-TAGCTTTCCTAAACGACAGTTTTGCAGCTACTTTTAAT 453
||||||| ||||| ||||| | |||||||||| |||||||||||||| |||| |||||||
Sbjct 306 CTGCTCTAACAGCCTTAAG-TATAGCTTTCCTTAACGACAGTTTTGCGGCTAGTTTTAAT 364
Query 454 GAGAAGATGATCCGGACCATTAGGCATTTCTCGCCACATTTAGCTGCAAAGATGAGGCCT 513
|||||| | || |||| |||||||||||||| ||||| || |||||||| ||||| |||
Sbjct 365 GAGAAGTTTATAAGGACGATTAGGCATTTCTCCCCACACTTGGCTGCAAAAATGAGACCT 424
Query 514 CCCCACATGCCTGTCATTCGTGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGC 573
||||||||||||||||| ||||| |||| ||| | |||||||| || ||||| |||||
Sbjct 425 CCCCACATGCCTGTCATCCGTGGAAGATCGGCAGCAAGAAAGACGGTATACATATGTGGG 484
Query 574 CAACCACGTTTGGTATTCGTC-TTAC-TTGGCTTAACCGCCAGTTTTGTCCTGTGGTTTA 631
||||||| | ||||||||| |||| || |||| | |||||| ||||| | ||||||
Sbjct 485 AAACCACGATGGGTATTCGTTGTTACATTC-CTTA-CAGCCAGTATTGTCATTTGGTTTT 542
Query 632 CTTCATGTGGTTTGTTATGGGTCCTCTATGCACTTACC--ACTGCCCTT-CTCATGAT-A 687
|||| || |||||||| ||||||||||||||||| || ||| ||||| || |||| |
Sbjct 543 CTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACT--CCTTACTTCCCTTGCTG-TGATCA 599
Query 688 CTTCTTCATGCAAGCCTGAGAACTCCAAACCTCAAGGCCCGCTTGAACACATTCCGTGAA 747
|| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 600 -TTGTTCATGCAAGCATGAGAACCCCAAATCTCAAGGCACGCTTGAACACATTCCGTGAA 658
Query 748 GAATT-CAGGGCTGTCTGGCGTAACTACAGCGAACTTTAAAGTCA 791
||||| | |||| |||||||||||||| || ||||||||| ||||
Sbjct 659 GAATTTC-GGGCCGTCTGGCGTAACTATAGTGAACTTTAA-GTCA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5