BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11400.2
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478476 jgi|Araly1|478476|fgenesh2_kg.3__1177__AT3G11400.1 1092 0.0
Ahg938450 jgi|Araly1|938450|scaffold_502641.1 931 0.0
Ahg487404 jgi|Araly1|487404|fgenesh2_kg.6__538__AT5G06000.1 128 1e-28
> Ahg478476 jgi|Araly1|478476|fgenesh2_kg.3__1177__AT3G11400.1
Length=1135
Score = 1092 bits (591), Expect = 0.0
Identities = 674/713 (95%), Gaps = 10/713 (1%)
Strand=Plus/Plus
Query 567 GTACCAAAGCGGATGAATCAAAGGCAACAGGAGATGGCTTGTCTCAGCTGGGTAAAGGTG 626
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 429 GTACCAAAGCAGATGAATCAAAGGCAACAGGAGACGGCTTGTCTCAGCTGGGTAAAGGTG 488
Query 627 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACATCAAAAT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACATCAAAAT 548
Query 687 GTCCATACAAGGATCTAGCTGCACCAACCGATGTCTTCATTGACAAGCCACCCACAGGGG 746
|||| |||||||||||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct 549 GTCCTTACAAGGATCTAGCTGCAACAACTGATGCCTTCATCGACAAGCCACCCACAGGGG 608
Query 747 AATCATCTACCATGTCTGCTGCACCTGGAACTGGCAAGGCCGCGTATGTCCCGCCTAGCA 806
| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 609 ATTCATCTACCATGTCCGCTGCACCTGGAACTGGCAAAGCCGCATATGTCCCGCCTAGCA 668
Query 807 TGAGAGCAGGTGCAGACAGAAGCGCTGTGGGTTCAGACATGAGGAGGAGGAACGATGAGA 866
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 669 TGAGAGCAGGTGCAGACAGAAGCGCTGTTGGTTCAGACATGAGGAGGAGGAACGATGAGA 728
Query 867 ACTCTGTGCGTGTAACCAATCT-GTCCGAGGATACCCGTGAACCTGACTTGATGGAGCTG 925
|||| |||||||||||||| || ||| || |||||||||||||| |||||||||||||||
Sbjct 729 ACTCAGTGCGTGTAACCAA-CTTGTCTGAAGATACCCGTGAACCGGACTTGATGGAGCTG 787
Query 926 TTCCACCCGTTTGGAGCTGTCACACGTGTCTATGTGGCCATTGATCAGAAAACTGGAGTG 985
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 788 TTCCATCCGTTTGGAGCTGTCACACGTGTCTATGTGGCCATCGATCAGAAAACTGGAGTG 847
Query 986 AGCAGAGGATTTGGTTTCGTCAATTTCGTGAGCAGAGAAGACGCTCAAAGAGCAATCAAC 1045
|||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||
Sbjct 848 AGCAGAGGATTTGGTTTCGTCAATTTTGTGAGCAGGGAAGACGCTCAACGGGCAATCAAC 907
Query 1046 AAATTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCAACTCCAAGA 1105
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 908 AAGTTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCCACTCCAAGA 967
Query 1106 CCAACCTAGAAAGAAATGTCTGATGTTGAGACCTTAAAACTCTTCTCATTCTCGTCTTTC 1165
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 968 CCAACCTAGAAAGAAATGTCTGATG---AGACCTTAAAACTCTTCTCATGCTCGTCTTTC 1024
Query 1166 TTGTTATGGATTTTTGTTTATCGACCAGTTTGTTTGTTGGTTTGGTTTCTGTATGAATAG 1225
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1025 TTGTTATGGATTTT-GTTTATTGACCAGTTTGTTTGTTGGTTTGGTT-CTGTACGAATAG 1082
Query 1226 ATGAGAA-TT-T-GTTCAATTTCTCTTTAATACATAAGGCATGCTTTTTAAAA 1275
||||||| || | ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1083 ATGAGAAGTTGTTGTTCAATTTCTCTTTAATACACAAGGCATTCTTTTTAAAA 1135
Score = 547 bits (296), Expect = 6e-155
Identities = 359/389 (92%), Gaps = 5/389 (1%)
Strand=Plus/Plus
Query 109 CGAAGCAAAAGCGGCGCATCTGAATCCCAAA-CGAGTGACGATGACGATCGATT--C-GC 164
||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||| | ||
Sbjct 48 CGAGGCATAAGCGGCGCATCTGAATCCCAAATTGAGAGACGATGACGATCGATTCACAGC 107
Query 165 AGCAAAAAACGAGCAAATTCAGATGGGGGGAAATGGACGAAGACGAAGATCTGGATTTCT 224
|||||| |||||||| ||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 108 AGCAAACGACGAGCAAGTTCAGATGGGGGGAAATGGACGAAGACGACGATTTTGATTTCT 167
Query 225 TGCTCCCTCCCAAGCAGGTGATTGGTCCAGATGAGAATGGTTTGAAGACGACGATCGAGT 284
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 168 TGCTCCCTCCCAAGCAAGTGATTGGCCCAGACGAGAATGGTTTGAAGACGACGATTGAGT 227
Query 285 ACAAATTCAACGATGAAGAAAATAAGGTTAAGATAACGACTAGGACACGTGTCCGCAAGC 344
|||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||
Sbjct 228 ACAAATTCAACGATGAGGGGAATAAGGTTAAGATTACGACTAGGACACGTGTCCGGAAGC 287
Query 345 TAGCTTCTGCTCGACTCAACAAACGAGCCATGGAGAGGAGGAACTGGCCTAAGTTCGGAG 404
||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 288 TAGCTTCTGCTCGGCTCAACAAACGGGCTATGGAGAGGAGGAACTGGCCTAAGTTTGGAG 347
Query 405 ACGCAGCCAATGAGGAAGCTGGTAGCCATCTCACTATGGTTTCTACCGAAGAGATCCTTC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 348 ACGCAGCCAATGAGGAAGCTGGTAGCCATCTCACTATGGTTTCTACCGAAGAGATTCTTC 407
Query 465 TCGAACGACCCCGAGCTCCTGGTGACCAA 493
||||||||||| ||||||||||| |||||
Sbjct 408 TCGAACGACCCAGAGCTCCTGGT-ACCAA 435
> Ahg938450 jgi|Araly1|938450|scaffold_502641.1
Length=927
Score = 931 bits (504), Expect = 0.0
Identities = 545/565 (96%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 567 GTACCAAAGCGGATGAATCAAAGGCAACAGGAGATGGCTTGTCTCAGCTGGGTAAAGGTG 626
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 GTACCAAAGCAGATGAATCAAAGGCAACAGGAGACGGCTTGTCTCAGCTGGGTAAAGGTG 417
Query 627 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACATCAAAAT 686
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 418 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACGTCAAAAT 477
Query 687 GTCCATACAAGGATCTAGCTGCACCAACCGATGTCTTCATTGACAAGCCACCCACAGGGG 746
|||| || ||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 478 GTCCTTATAAGGATCTAGCTGCAACAACCGATGCCTTCATCGACAAGCCACCCACAGGGG 537
Query 747 AATCATCTACCATGTCTGCTGCACCTGGAACTGGCAAGGCCGCGTATGTCCCGCCTAGCA 806
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 AATCATCTACCATGTCCGCTGCACCTGGAACTGGCAAGGCCGCATATGTCCCGCCTAGCA 597
Query 807 TGAGAGCAGGTGCAGACAGAAGCGCTGTGGGTTCAGACATGAGGAGGAGGAACGATGAGA 866
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 TGAGAGCAGGTGCAGACAGAAGCGCTGTTGGTTCAGACATGAGGAGGAGGAACGATGAGA 657
Query 867 ACTCTGTGCGTGTAACCAATC-TGTCCGAGGATACCCGTGAACCTGACTTGATGGAGCTG 925
||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||
Sbjct 658 ACTCTGTGCGTGTAACCAA-CTTGTCCGAAGATACCCGTGAACCGGACTTGATGGAGCTG 716
Query 926 TTCCACCCGTTTGGAGCTGTCACACGTGTCTATGTGGCCATTGATCAGAAAACTGGAGTG 985
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 717 TTCCATCCGTTTGGAGCTGTCACGCGTGTGTATGTGGCCATTGATCAGAAAACTGGAGTG 776
Query 986 AGCAGAGGATTTGGTTTCGTCAATTTCGTGAGCAGAGAAGACGCTCAAAGAGCAATCAAC 1045
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 AGCAGAGGATTTGGTTTCGTCAATTTCGTGAGCAGAGAAGACGCTCAACGAGCAATCAAC 836
Query 1046 AAATTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCAACTCCAAGA 1105
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 AAATTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCCACTCCAAGA 896
Query 1106 CCAACCTAGAAAGAAATGTCTGATG 1130
|||||||||||||||||||||||||
Sbjct 897 CCAACCTAGAAAGAAATGTCTGATG 921
Score = 483 bits (261), Expect = 2e-135
Identities = 321/350 (92%), Gaps = 3/350 (1%)
Strand=Plus/Plus
Query 145 GACGATGACGATCGATTCGCAGCAAAAAACG-AGCAAATTCAGATGGGGGGAAATGGACG 203
|||||||||||| ||||||||| | |||| | ||||| ||| ||||||||||||||||||
Sbjct 17 GACGATGACGATGGATTCGCAGGAGAAAA-GAAGCAAGTTCCGATGGGGGGAAATGGACG 75
Query 204 AAGACGAAGATCTGGATTTCTTGCTCCCTCCCAAGCAGGTGATTGGTCCAGATGAGAATG 263
||||||| |||||||||||| |||||||||| |||||||||||||| ||||| |||||||
Sbjct 76 AAGACGACGATCTGGATTTCCTGCTCCCTCCGAAGCAGGTGATTGGGCCAGACGAGAATG 135
Query 264 GTTTGAAGACGACGATCGAGTACAAATTCAACGATGAAGAAAATAAGGTTAAGATAACGA 323
||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||
Sbjct 136 GTTTGAAGACGACGATCGAATACAAGTTCAACGATGAGGGCAATAAGGTTAAGATAACGA 195
Query 324 CTAGGACACGTGTCCGCAAGCTAGCTTCTGCTCGACTCAACAAACGAGCCATGGAGAGGA 383
|||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 196 CTAGGACACGTGTCCGGAAGCTAGCTTCAGCTCGGCTCAACAAACGGGCTATGGAGAGGA 255
Query 384 GGAACTGGCCTAAGTTCGGAGACGCAGCCAATGAGGAAGCTGGTAGCCATCTCACTATGG 443
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 256 GGAACTGGCCTAAGTTTGGAGACGCTGCCAATGAGGAAGCTGGTAGCCATCTCACTATGG 315
Query 444 TTTCTACCGAAGAGATCCTTCTCGAACGACCCCGAGCTCCTGGTGACCAA 493
|||| ||||||||||| ||||||||||||||| || |||||||| |||||
Sbjct 316 TTTCCACCGAAGAGATTCTTCTCGAACGACCCAGACCTCCTGGT-ACCAA 364
> Ahg487404 jgi|Araly1|487404|fgenesh2_kg.6__538__AT5G06000.1
Length=924
Score = 128 bits (69), Expect = 1e-28
Identities = 233/308 (76%), Gaps = 27/308 (9%)
Strand=Plus/Plus
Query 149 ATGACGATCGATTCGCA-GCAAAAAACGAGCAA-ATTCAGATGGGGGGAAATGGACGAAG 206
||| |||| |||||| | ||||||||| | ||| ||| ||||||| ||||| |||||||
Sbjct 5 ATGGCGATTGATTCG-ATGCAAAAAACAAACAAGCTTC-GATGGGGAGAAATTGACGAAG 62
Query 207 ACGAAGA--TC-TGGATTT-CTTGCTCCCTCCCAAGCAGGTGATTGGTCCAGATGAGAAT 262
| ||||| | | ||||| ||| || || || ||||| |||||||||| || ||||
Sbjct 63 AAGAAGACGACTTTGATTTCCTT-CTTCCGCCTAAGCAAATGATTGGTCCGGACCAGAAC 121
Query 263 GGTTTGAAG-ACGACGATCGAGTACAAATTCAACGATGA-AGAAAATAAGGTTAAGATAA 320
||| | ||| | | ||| | |||||| |||||||| || | ||| ||||| || || |
Sbjct 122 GGTGTAAAGAAAG-TGATTGTGTACAAGTTCAACGACGAGGGCAAA-AAGGTCAAAATCA 179
Query 321 CGACTAGGACACGTG-TCCGCAAGCTAGCTTCTGCTCGACTCAACAAACGAGCCATGGAG 379
| || | ||| |||| || | |||| || || || || | ||||| |||| |||||
Sbjct 180 CTACCACGACTCGTGTTCAG-AAGCGAG---CT-CT-GA--C--CAAACAAGCCGTGGAG 229
Query 380 AGGA-GGAACTGGCCTAAGTTCGGAGACGCAGCCAATGAGGAAGCTGGTAGCCATCTCAC 438
|| ||| |||| |||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 230 -CGACGGAGCTGGAATAAGTTCGGAGACGCAGCCAATGAGGAAGCCGGTAGCTACCTCAC 288
Query 439 TATG-GTT 445
||| |||
Sbjct 289 AATGCGTT 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5