BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11405.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478477 jgi|Araly1|478477|fgenesh2_kg.3__1178__AT3G11405.1         610    3e-174


> Ahg478477 jgi|Araly1|478477|fgenesh2_kg.3__1178__AT3G11405.1
Length=465

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 424/469 (90%), Gaps = 8/469 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAAAGGTTTCAAAACTCAGTATTATCTTCCGTGACGAACTACAAAACTTCAACAAT  60
            ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| 
Sbjct  1    ATGAAAAAGGTTTCAAAACTCAGTATTATCTTCCGTGACGAACTACAACACCTCAACAAA  60

Query  61   GACTATGTCGAAAATATAGATGTCGTCGGCaaaaaaa-CATCTAATTCATCATCGGACAA  119
            ||||  ||||||||| ||||||||||||| ||||||| ||| ||| ||||| ||||||||
Sbjct  61   GACTCGGTCGAAAATTTAGATGTCGTCGG-AAAAAAACCATTTAACTCATCGTCGGACAA  119

Query  120  TGAAAGCGACCAATTCGCCAGCTTGTTTGGTTCTTCG-TCACCGTCTTCGTTTCAAATGC  178
            |||| ||||||||||| || ||||||||| ||||| | ||| ||||||||||||||||||
Sbjct  120  TGAACGCGACCAATTCTCCGGCTTGTTTGCTTCTT-GCTCATCGTCTTCGTTTCAAATGC  178

Query  179  CTCTTCAGTACCCGAATTACGCAAAGGAACAGTACGACATTATGTCGGAGGAAGAACTCG  238
            ||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||
Sbjct  179  CTCTTCAGTACCCGAATTACAAAAAGGAACAATACGAGATTATGTCGGAGGAAGAACTCG  238

Query  239  ATCGACTTCTCAAACTCTATGGTCTGCCTACAGATATCGGTAACTTGTCCTGCAAAAAAG  298
            ||| |||||||||||||||||||||||| | |||||||||| ||||||| | ||||||||
Sbjct  239  ATCAACTTCTCAAACTCTATGGTCTGCCAATAGATATCGGTGACTTGTCTTACAAAAAAG  298

Query  299  AATTTGCAGTGGGTGCATTCTTGTGGGAGACGGGGTTAAATTCTTCTCTGGATGAGCATG  358
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  AATTTGTAGTGGGTGCATTCTTGTGGGAGACGGGGTTAAATTCTTCTCTGGATGAGCATG  358

Query  359  ATTCAGTAAACCCTAATTCGTCCATTGATGATTTGGAAGAGAGATCTTTGATAGGGTT-A  417
            ||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| || |
Sbjct  359  ATTCAGTAAACCCTAATTCTTCCACTGATGATTTGGATGAGAGCTCTTTGATAGGATTGA  418

Query  418  GTGACAGTTCT-AGTAAAGGATATGGTTCAATTTATATTCCGTGGGTAG  465
             |||| ||||| | |||| ||||||||||| ||||| || |||| ||||
Sbjct  419  -TGACGGTTCTGA-TAAAAGATATGGTTCACTTTATTTTTCGTGTGTAG  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5