BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11410.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478478 jgi|Araly1|478478|fgenesh2_kg.3__1179__AT3G11410.1 1940 0.0
Ahg907619 jgi|Araly1|907619|Al_scaffold_0002_700 207 2e-52
Ahg894853 jgi|Araly1|894853|Al_scaffold_0006_2849 189 6e-47
Ahg925214 jgi|Araly1|925214|scaffold_200775.1 152 7e-36
Ahg897463 jgi|Araly1|897463|Al_scaffold_0005_1429 132 1e-29
Ahg322696 jgi|Araly1|322696|fgenesh1_pm.C_scaffold_5000240 111 1e-23
> Ahg478478 jgi|Araly1|478478|fgenesh2_kg.3__1179__AT3G11410.1
Length=1539
Score = 1940 bits (1050), Expect = 0.0
Identities = 1382/1531 (90%), Gaps = 67/1531 (4%)
Strand=Plus/Plus
Query 1 ATTGCATTTCCTAACGCTCAACAAAAtctctctctactaatatct-ct-ctctctctctc 58
||||||||||||||||||| | ||||||||| ||| || | ||| || | ||||||||
Sbjct 1 ATTGCATTTCCTAACGCTC-A-AAAATCTCTTTCT-CT-CTCTCTACTAATATCTCTCTC 56
Query 59 tctATTGTTG-A-A-GAAGACTCATAATCGGAGATTGTTTGTTTTTGGTTTGCTCTGTAA 115
| | ||| | | | ||||||||| |||||||||||||||| |||| |||||||||| |
Sbjct 57 T-TGTTGAAGAAGACGAAGACTCA-AATCGGAGATTGTTTG--TTTGCTTTGCTCTGT-A 111
Query 116 ATTGGAG-AA-GTTTTGTTAGAGATCAAATGGCTGGGATTTGTTGCGGTGTTGTTGGAGA 173
|||| || || ||| |||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 112 ATTGAAGAAAGGTTCTGTT-GTGGTTAAATGGCTGGGATTTGTTGCGGTGTTGTTGGAGA 170
Query 174 GACTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGA 233
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GTCTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGA 230
Query 234 TCTACTTCCGTCGATCAAAATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAAAACTG 293
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 231 TCTACTTCCGTCGATCAAGATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAGAGTTG 290
Query 294 CCGTAAACGGCAGAAGCGTGAGACAGTAGTGCTCTCGACGTTACCGGGAAATCTAGATCT 353
|||||| ||||||||| ||||||||||||| | || | |||||||||||||
Sbjct 291 TCGTAAAAGGCAGAAGCTTGAGACAGTAGTG---T---CG--A----GAAATCTAGATCT 338
Query 354 GGATTCGAATGTGAGGAGTGAGA-ATAAGAAGGCTAGATCAGCGGTTACGAATTCAAATT 412
||| ||||||||||||||||| | ||||||||| || |||||||||||||||||||||||
Sbjct 339 GGAATCGAATGTGAGGAGTGA-ACATAAGAAGGTTAAATCAGCGGTTACGAATTCAAATT 397
Query 413 CTGTTACGGAAGCAGAGA---GTTTCTTTTCCGATGTACCTAAGATCGGTACGACGTCGG 469
| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 398 CCGTTACGGAAGCAGAGAGCTGTTTCTTTTCCGATGTGCCTAGGATCGGTACGACGTCGG 457
Query 470 TTTGTGGTAGAAGACGAGACATGGAAGACGCTGTCTCGATTCATCCTTCGTTTCTTCAAC 529
|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 458 TTTGTGGTAGAAGAAGAGACATGGAAGACGCTGTATCAATTCATCCTTCGTTTCTTCAAC 517
Query 530 GGAACTCTGAGAATCATCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTG 589
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GAAACTCTGAGAATCTTCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTG 577
Query 590 CGGAGAAGTGCAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTT 649
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CGGAGAAGTGTAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTT 637
Query 650 CCGACGAGTGGACAGAGACGATGGTTAAGAGTTTTCAAAAAATGGATAAAGAAGTTAGCC 709
|||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 638 CCGACGAGTGGAAAGAGACGATGGTGAAGAGTTTTCAAAAAATGGACAGAGAAGTTAGCC 697
Query 710 AACGAGAGTGTAACTTAGTTGTTAATGGTGCTACTCGGAGTATGAAAAATTCTTGTAGAT 769
| ||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||
Sbjct 698 AGCGAGAGTGTAACTTAGTTGTTAATGGTGCAAATCGGAGTATGAAGAACTCTTGTAGAT 757
Query 770 GTGAATTGCAGTCTCCTCAGTGTGACGCCGTCGGATCCACCGCTGTTGTATCGGTTGTCA 829
|||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||
Sbjct 758 GTGAATTGCAGTCTCCTCAGTGCGATGCCGTCGGATCCACCGCTGTTGTCTCTGTTGTCA 817
Query 830 CGCCGGAGAAGATCATTGTTTCTAATTGCGGTGATTCACGGGCTGTGCTTTGTCGTAACG 889
|||||||||||||||||||||| || ||||| ||||| || || |||||||| |||||||
Sbjct 818 CGCCGGAGAAGATCATTGTTTCCAACTGCGGCGATTCTCGCGCCGTGCTTTGCCGTAACG 877
Query 890 GTGTAGCCATTCCTCTCTCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGA 949
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GTGTAGCCATTCCTCTATCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGA 937
Query 950 TCCAACAAGCTGGTGGGCGAGTTATATATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTG 1009
|||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 938 TCCAGCAAGCGGGTGGGCGGGTTATTTATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTG 997
Query 1010 CCATGTCTAGAGCAATTGGTGATAATTACTTGAAACCGTATGTGATTCCGGATCCGGAGG 1069
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 998 CCATGTCTAGAGCAATTGGCGATAATTACTTGAAACCATATGTGATTCCGGATCCGGAGG 1057
Query 1070 TAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGACTAT 1129
| |||||||||||||| || || || || |||||||||||||||||||||||||||||||
Sbjct 1058 TTACAGTGACGGATCGTACCGACGACGACGAGTGTTTGATCTTGGCGAGTGATGGACTAT 1117
Query 1130 GGGATGTTGTACCAAACGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTG 1189
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GGGACGTTGTACCAAATGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTG 1177
Query 1190 GTGCGGGTG-ACGACT-CAG-ATGCGGCGCACAATGCGTGCTCCGATGCGGCGTTGCTCT 1246
|| || || | || | ||| | |||||||||||||||||||| |||||||||||||| |
Sbjct 1178 GTCCGA-TGGATGA-TGCAGCA-GCGGCGCACAATGCGTGCTCTGATGCGGCGTTGCTAT 1234
Query 1247 TAACAAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTTGTGGTTGACT 1306
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1235 TAACGAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTGGTGGTTGACC 1294
Query 1307 TGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAATAAT-TAGT--GT-TAT-AATTAGT 1361
||||||||||||||||||||||| ||||||||||||||| |||| || | | |||||||
Sbjct 1295 TGAGGAAGAGGAGGAATAATCAATCGTCGTCTTAATAATATAGTTAGTGTTTTAATTAGT 1354
Query 1362 AGTAGTATTAGA-ATAATTGTTACATA-GCCTAATTGTAATTGTATTCtttttatttttc 1419
| |||||||||| | |||||||||||| |||||||||||||| | || | |
Sbjct 1355 AATAGTATTAGAGA-AATTGTTACATAAGCCTAATTGTAATT-T-TT-T----------C 1400
Query 1420 tattttagtttttctcattttaaggtgttttttcttttctattttAGTTAGCTCTTAATT 1479
|||||||||||| |||||| |||||||| |||||||| | || |||||||||||||||
Sbjct 1401 TATTTTAGTTTT-CTCATTG-AAGGTGTTCTTTCTTTT-T-TT--AGTTAGCTCTTAATT 1454
Query 1480 CAGGCTGGGGAAGAAAAAGAGCTGATTAAAT 1510
|||||||||||||||||||||||||||||||
Sbjct 1455 CAGGCTGGGGAAGAAAAAGAGCTGATTAAAT 1485
> Ahg907619 jgi|Araly1|907619|Al_scaffold_0002_700
Length=312
Score = 207 bits (112), Expect = 2e-52
Identities = 246/306 (80%), Gaps = 28/306 (9%)
Strand=Plus/Plus
Query 1067 AGGTAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGAC 1126
||||||||||||| ||||| || || || || ||||||||||||||||||||||||||||
Sbjct 11 AGGTAACAGTGACAGATCGTACCGACGACGACGAGTGTTTGATCTTGGCGAGTGATGGAC 70
Query 1127 TATGGGATGTTGTACCAAACGAGACGGCGTG-TGG--C---GTGGCTCGCATGTGCCTTC 1180
||||| | ||||||||||| |||||||||| ||| | || | | || |||||| ||
Sbjct 71 TATGGAACGTTGTACCAAATGAGACGGCGTTATGGTACAACGTTG-T-GC-TGTGCCCTC 127
Query 1181 GAGGTGCTGGT-G--CGG---GTGACGACTCAGATGCGGC-GC---A--CAATGCGTGCT 1228
||||||||||| | ||| |||| || || | ||| || || | |||||| ||||
Sbjct 128 GAGGTGCTGGTAGAGCGGATTGTGATGATTCTGTTGCAGCAGCCGTAGACAATGCTTGCT 187
Query 1229 CCGATGCGGCGTTGCTCTTAACAAAGTTGGCTCTAGCAAGAC-AGAGCTCCGATAACGTG 1287
| ||||| | ||||| ||||| ||||| ||||||||||||| | |||| |||||||||
Sbjct 188 CTGATGCTTCTTTGCTATTAACGAAGTTTGCTCTAGCAAGACCA-AGCTTTGATAACGTG 246
Query 1288 AGCGTCGT--TG---TGGTTGACTTGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAAT 1342
||||| || || |||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 247 AGCGTTGTGGTGCAGTGGTTGACAGGAGGAAGAGGAGGAATAATCAATCATCGTCTTAAT 306
Query 1343 AATTAG 1348
||||||
Sbjct 307 AATTAG 312
> Ahg894853 jgi|Araly1|894853|Al_scaffold_0006_2849
Length=465
Score = 189 bits (102), Expect = 6e-47
Identities = 138/156 (88%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 804 ATCCACCGCTGTTGTATCGGTTGTCACGCCGGAGAAGATCATTGTTTCTAATTGCGGTGA 863
||||||||| || || || ||||||||||||||||||| |||| |||| || ||||| ||
Sbjct 15 ATCCACCGCCGTCGTCTCTGTTGTCACGCCGGAGAAGACCATTATTTCCAAATGCGGCGA 74
Query 864 TTCACGGGCTGTGCTTTGTCGTAACGGTGTAGCCATTCCTCTCTCCGTAGATCACAAGCC 923
|||||| | | ||||||| ||| |||| ||||||| |||||||||||| |||||||||||
Sbjct 75 TTCACGTGATATGCTTTGCCGTGACGGCGTAGCCAGTCCTCTCTCCGTGGATCACAAGCC 134
Query 924 GGATCGACCCGATGAATTGATTCGGATCCAACAAGC 959
|||||||||||||||||||||||||||||| |||||
Sbjct 135 GGATCGACCCGATGAATTGATTCGGATCCAGCAAGC 170
> Ahg925214 jgi|Araly1|925214|scaffold_200775.1
Length=235
Score = 152 bits (82), Expect = 7e-36
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 804 ATCCACCGCTGTTGTATCGGTTGTCACGCCGGAGAAGATCATTGTTTCTAATTGCGGTGA 863
|||||||||||| || || ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 41 ATCCACCGCTGTCGTCTCTGTTGTCACGCCGGAGAAGATCATTGTTTCCAAATGCGGCGA 100
Query 864 TTCACGGGCTGTGCTTTGTCGTAACGGTGTAGCCATTCCTCTCTCCGTAGATCACAAG 921
|||||| || |||||||| | |||||| |||||||||||||||||||| |||||||||
Sbjct 101 TTCACGTGCCGTGCTTTGCCATAACGGCGTAGCCATTCCTCTCTCCGTGGATCACAAG 158
Score = 89.8 bits (48), Expect = 6e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 981 GGATGGAGCTAGGGTTCTTGGAGTTCTTGCCATGTCTAGAGCAATTGGTGA 1031
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 158 GGATGGAGCTAGGGTTCTTGGAGTTCTTGCTATGTCTAGAGCAATTGGTGA 208
> Ahg897463 jgi|Araly1|897463|Al_scaffold_0005_1429
Length=234
Score = 132 bits (71), Expect = 1e-29
Identities = 104/119 (87%), Gaps = 5/119 (4%)
Strand=Plus/Minus
Query 1211 CGGCGCACAATGCGTGCTCCGATGCGGCGTTGCTCTTAACAAAGTTGGCTCTAGCAAGAC 1270
|||| |||||||| ||||| ||||| | ||||| |||||||||||||||||||||||||
Sbjct 133 CGGCACACAATGCTTGCTCTGATGCTTCATTGCTATTAACAAAGTTGGCTCTAGCAAGAC 74
Query 1271 AGAGCTCCGATAACGTGAGCGTCGT--T---GTGGTTGACTTGAGGAAGAGGAGGAATA 1324
|||||||||||||||||||||| || | ||||||||| |||||||||||||||||
Sbjct 73 AGAGCTCCGATAACGTGAGCGTTGTGGTACAGTGGTTGACAGGAGGAAGAGGAGGAATA 15
> Ahg322696 jgi|Araly1|322696|fgenesh1_pm.C_scaffold_5000240
Length=429
Score = 111 bits (60), Expect = 1e-23
Identities = 73/79 (92%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 954 ACAAGCTGGTGGGCGAGTTATATATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTGCCAT 1013
|||||| |||||||| ||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 109 ACAAGCAGGTGGGCGGGTTAT-TATTGGGATGTAGCTAAGGTTCTTGGAGTTCTTGCCAT 167
Query 1014 GTCTAGAGCAATTGGTGAT 1032
|||||||||||||| ||||
Sbjct 168 GTCTAGAGCAATTG-TGAT 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5