BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11420.1
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478479 jgi|Araly1|478479|fgenesh2_kg.3__1180__AT3G11420.1 3035 0.0
> Ahg478479 jgi|Araly1|478479|fgenesh2_kg.3__1180__AT3G11420.1
Length=2049
Score = 3035 bits (1643), Expect = 0.0
Identities = 1921/2054 (94%), Gaps = 23/2054 (1%)
Strand=Plus/Plus
Query 27 TATTCGAAAGTCGTCACATCGTTGACTAAAGCTGAGGACAACTCTGTCA-TT-T-T-TAT 82
||||||||||||||||||||||||||| ||| |||||||| || |||| || | | | |
Sbjct 1 TATTCGAAAGTCGTCACATCGTTGACTGAAGATGAGGACATGTCCGTCATTTGTGTGTTT 60
Query 83 CT-TATTCACGTGGCTACCTCTTCTTCTTCGTCTCTCATTTTATGTGTAATCCCACAGAG 141
| |||||||||||||||||||||||||||||||| || ||||| ||| ||||||| |||
Sbjct 61 TTCTATTCACGTGGCTACCTCTTCTTCTTCGTCTCCCA-TTTATCTGTTATCCCACCGAG 119
Query 142 CTTGTCACTCCaaaaaagg-caaaacaaaaaaaaaacagcttctaaaaataaaaaacaaa 200
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 120 CTTGTCACTCCAAAAAAGGTAAAAACAAAAAAAAAACAGCTTCTAAAAATAAAAAATAAA 179
Query 201 aCAATAA-TCCAGCCACCGTAG-GGGTAATTCCGTAAATTTGTAACAGAAACTCCATTCC 258
| ||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 180 AAAATAACCCCAGCCACCGT-GAGGGTAATTCCGTAAATTT-TAACAGAAACTCCATTCC 237
Query 259 CGCGGCGTATGCAGAGGGCAATCCCGTAAACTTAACCCATCTCCGGTGATGAATAATATC 318
|||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||
Sbjct 238 CGCGGCGTATGCAGAGGGTAATTCCGTAAACTTAAGCCATCTCCGGTGATGAATAAGATC 297
Query 319 AATTCCTTCACGCCGGAGTGATTTTCCACA-AAAAATAAGATATGAAAGCAAATCGCGGC 377
| |||||||||||||||||||||| |||| |||||||| | ||||||||||| ||||||
Sbjct 298 CACTCCTTCACGCCGGAGTGATTTTTCACATAAAAATAA-ACATGAAAGCAAACCGCGGC 356
Query 378 GGCGGAGAGCACGGCCAACACGAGGCTCTAAAGCTTTCCAGTTTCTTCTTCATGCCGGAG 437
||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct 357 GGCGGAGAGCACGGCCACCACGAGGCTCTCAAGTTTTCCAGTTTCTTCTTCATGCCGGAA 416
Query 438 CGGCCACGTGATTACCTCGTGCTTTTCACACGTTTCTCCGTCCTCACGTGCCTCATCGTC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGGCCACGTGATTACCTCGTGCTTTTCACACGTTTCTCCGTCCTCACGTGCCTCATCGTC 476
Query 498 TCCGTATCTCTTGTTCTCCGCGCCACTTTTTTATCCCCTTCCGCTCGAGACTATTCCACC 557
||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 477 TCCGTCTCTCTGGTTCTCCGTGCCACTTTTTTATCCCCCTCCGCTCGTGACTATTCCACC 536
Query 558 ACCTACGGTCTCAAATTAACCGCCGTACCTCAAAAAGCCATAGCTCTCCCTCCGTCCGCA 617
|||||||||||| | | |||||||||||||| |||||||||||| |||||||| ||| |
Sbjct 537 ACCTACGGTCTCCGACTCACCGCCGTACCTCAGAAAGCCATAGCTTTCCCTCCGACCGGA 596
Query 618 TCCGTCGGACCAACCAATATCTCCCATATCTTCTTCTCTATCGCCGGAGCAGCTGAGACA 677
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 TCCGTCGGACCGATCAATATCTCCCACATCTTCTTCTCTATCGCCGGAGCAGCTGAGACA 656
Query 678 TGGATCGATCGGAGCCAGTACATCTCCTTATGGTGGCGAAACACGACACGTGGCTTCGTC 737
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 TGGATCGATCGGAGCCAGTACATCTCCTTATGGTGGCGAAACTCGACACGTGGCTTCGTC 716
Query 738 TGGCTCGATGAACCGGTGAAAATCCCTGAAAATCACTCCGATGTCAGATTCTCGATCCCG 797
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 TGGCTCGATGAACCGGTGAAAATCCCCCAAAATCACTCCGATGTCAGATTCTCGATCCCG 776
Query 798 ACTCGAGTTTCTGATCCAGGCTGGACTCGATTCAAATTCTCCAGCTCAAGAGCCGCGGTT 857
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 777 ACTCGAGTTTCCGATCCAGGCTGGAGTCGATTCAAATTCTCCAGCTCAAGAGCCGCGGTT 836
Query 858 CGAATCGCTCGTATAATCTGGGATAGTTATCGGTTAAATCTACCAAATGTCCGGTGGTTC 917
||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 837 CGAATCGCTCGGATAATCTGGGATAGTTATCGGCTAAATCTACCAAATGTGCGGTGGTTC 896
Query 918 GTCATGGGAGATGACGATACCGTCTTCTTCACCGAGAATCTCGTCAAGGTTCTCTCAAAG 977
|| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 897 GTGATGGGAGATGACGATACCGTCTTCTTCACGGATAATCTCGTCAAGGTTCTCTCGAAG 956
Query 978 TACGACCACGAGCAGATGTGGTACATCGGAGGAAACTCAGAGAGCGTCGAGCAAGACGTG 1037
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 957 TACGACCACGAGCAGATGTGGTACATCGGAGGAAACTCGGAGAGCGTCGAGCAAGATGTG 1016
Query 1038 ATGCACGCGTACGATATGGCGTTTGGCGGCGGTGGTTTCGCTCTGAGCCGTCCATTAGCG 1097
|||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 1017 ATGCACGCGTACGACATGGCGTTTGGCGGCGGCGGTTTCGCTATTAGCCGTCCATTAGCG 1076
Query 1098 GCGCGTTTGGCCGCCGCGATGGATGATTGTCTCCAACGTTATTTCTATTTTTACGGTTCT 1157
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1077 GCGCGTTTGGCTGGCGCGATGGATGATTGTCTCCAACGGTATTTCTATTTTTACGGTTCT 1136
Query 1158 GATCAGAGAATCGCGTCTTGCATCAGCGAGATCGGCGTTCCGTTCACCGAAGAACGCGGT 1217
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1137 GATCAGAGAATCGCGGCTTGCGTTAGCGAGATCGGCGTTCCGTTCACCGAAGAACGCGGT 1196
Query 1218 TTTCATCAGCTTGACATAAGAGGAGATCCATACGGGTTTCTAGCGGCGCATCCATTGGCA 1277
||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1197 TTTCACCAGCTTGACATAAGAGGAGATCCATACGGATTTCTAGCAGCGCATCCGTTGGCA 1256
Query 1278 CCGCTTGTATCGTTGCATCACCTTGTTTACTTAGACCCAATGTTCCCTAACAAAAACCCG 1337
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1257 CCACTTGTATCGTTGCATCACCTCGTTTACTTAGACCCAATGTTCCCTAACAAAAACCCG 1316
Query 1338 ATCGAGTCGTTACAGACCCTAATGAAACCTTATACCTTAGACCCGAATCGAATACTCCAA 1397
|||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct 1317 ATCGAGTCGTTACAGACCCTTATGAAACCTTATAACTTAGACCCAAATCGAATACTCCAA 1376
Query 1398 CAGATTAATTGTCATGATCGCAAACGTCAATGGTCTATATCCATCTCTTGGGGATACACC 1457
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1377 CAGGTTAATTGCCATGATCGCAAGCGTCAATGGTCTATATCCATCTCTTGGGGATACTCC 1436
Query 1458 ATTCAGATATACACTTACTTCTTGACTGCTACGGAGCTGACTACGCCGTTGCAGACCTTC 1517
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1437 ATTCAGATCTACACTTACTTCTTGACTGCTACGGAGCTGAATACGCCGTTGCAGACCTTC 1496
Query 1518 AAAACTTGGCGGTCTTCCAGCGATGGACCTTTCGTGTTTAACACTCGGCCCTTGAAACCT 1577
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1497 AAAACTTGGCGGTCTTCCAGCGATGGACCTTTCGTGTTCAACACTCGGCCCTTGAAACCT 1556
Query 1578 GACCCCTGTGAGCGTCCGGTCACTTATTTCATGGATGGTGCCGAGGATGTACGGGATAGT 1637
||||| ||||||||||| |||| |||||||||||||||||| |||||||| |||| ||||
Sbjct 1557 GACCCGTGTGAGCGTCCCGTCATTTATTTCATGGATGGTGCAGAGGATGTGCGGGGTAGT 1616
Query 1638 GGGACGAAAACTTGGTATAGCATAGGGGATAAGAACTATGGTCATTGCGGAAAGATTGAG 1697
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||
Sbjct 1617 GGGACGAAAACTTGGTATAGCATAGCGGATAAGAATTATGGTCATTGCGAAAAGAGTGAG 1676
Query 1698 CATACTCGATTAACTAAAGTGAAGAGGATATTGGTGACTTCAATGAAGACGGATCCTGAG 1757
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CATACTCGGTTAACCAAAGTGAAGAGGATATTGGTGACTTCAATGAAGACGGATCCTGAG 1736
Query 1758 TATTGGAACAAGGCACCGAGGAGACAGTGTTGTGAGGTGATGgaaggaaaagtaggaaaa 1817
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1737 TATTGGAACAAGGCACCGAGGAGACAGTGTTGTGAGGTGATGGAAGGTGGGGGAGGAAAA 1796
Query 1818 agaaaagagaaagaaaTGTTGTTAAGGATTAGAAAATGCAGATCTTTGGAGAAGATATaa 1877
|||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1797 AGAATGGAAAAAGAAATGTTGATAAGGATTAGAAAATGCAGATCTTTGGAGAAGATATAA 1856
Query 1878 aaaaaGCGTTTTAATTAGAGAGAT-T-TTT--GCACATACAGATTTAGATTCGATCATTA 1933
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct 1857 AAAAAGCGTTTTAATTAGAGAGATATATTTTTGCACATACAGATTTAGATTCGATCAT-A 1915
Query 1934 GTTATTTGTTTCTAAATTCCTCAATTCCTAGTACCAAGAGAATG----ACGATTTTCTCT 1989
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1916 GTTGTTTGTTTCTAAATTCCTCAATTCCTAGTACCAAGAGAATGGCGTACGATTTTCTCT 1975
Query 1990 AGTAATACTGGCACTCTT-CGTTTTTCAACATGTAAACATTACTTTGTATAATTAGTCTA 2048
| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1976 ATTAATACTGGCACTCTTGCGTTTTTCATCATGTAAACATTACTTTGTATAATTAGTCGA 2035
Query 2049 TATCAAATAAATAG 2062
||| ||||||||||
Sbjct 2036 TATAAAATAAATAG 2049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79913334010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5