BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11430.1 Length=1929 Score E Sequences producing significant alignments: (Bits) Value Ahg478480 jgi|Araly1|478480|fgenesh2_kg.3__1181__AT3G11430.1 2649 0.0 > Ahg478480 jgi|Araly1|478480|fgenesh2_kg.3__1181__AT3G11430.1 Length=1822 Score = 2649 bits (1434), Expect = 0.0 Identities = 1631/1728 (94%), Gaps = 6/1728 (0%) Strand=Plus/Plus Query 1 CAAATACGGTAGGTGCAATACTGATAAACTGCCATTCCCATTGCATTAGACGCTAGTCAA 60 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAATTACGGTAGGTGCAATATTGATAAACTGCCATTCCCATTGCATTAGACGCTAGTCAA 60 Query 61 TCCAAACCTTATAACATAAAAAGTTATAGTCCA--TTTCTTTCATATCCAATCGAGTCAA 118 ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 61 TCCAAACCTTATAACATAAAACGTTATAGTACATTTTTCTTTCATATCCAATCGAGTCAA 120 Query 119 AA-TAATATTCGAGCAAAAAACAAAAGAAATGGTTATGGAGCAAGCTGGAACGACATCGT 177 || || ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 121 AATTATTATTCGATCAAAAAACAAAAGCAATGGTTATGGAGCAAGCTGGAACGACACCGT 180 Query 178 ATTCGGTCGTGTCAGAGTTTGAAGGAACAATACTGAAGAACGCAGATTCATTCTCTTACT 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 ATTCGGTCGTGTCAGAGTTTGAAGGAACAATACTGAAGAACGCAGATTCATTCTCCTACT 240 Query 238 TCATGCTCGTAGCCTTCGAAGCAGCTGGTCTAATTCGTTTCGCTATCTTGTTGTTTCTAT 297 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 TCATGCTCGTAGCCTTCGAAGCATCTGGTCTAATTCGTTTCGCTATCTTGTTGTTTCTAT 300 Query 298 GGCCCGTAATCACACTCCTTGACGTTTTCAGCTACAAAAACGCAGCTCTCAAGCTCAAGA 357 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 301 GGCCCATAATCACACTCCTTGACGTTTTCAGCTACAAAAACGCCGCTCTCAAGCTCATGA 360 Query 358 TTTTTGTAGCCACTGTTGGTCTACGTGAACCGGAGATCGAATCAGTGGCTAGAGCCGTTC 417 |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| | Sbjct 361 TTTTTGTAGCCACTGTTGGTTTACGTGAACCAGAGATCGAATCGGTGGCTAGAGCCGTCC 420 Query 418 TGCCAAAATTCTACATGGACGACGTAAGCATGGACACGTGGAGGGTTTTCAGCTCGTGTA 477 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 421 TGCCAAAGTTCTACATGGATGACGTAAGCATGGACACGTGGAGGGTTTTTAGCTCGTGTA 480 Query 478 AGAAGAGGGTCGTGGTCACGAGAATGCCTCGAGTTATGGTGGAGAGGTTTGCTAAGGAGC 537 | |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| | Sbjct 481 AAAAGAGGGTCGTGGTGACAAGAATGCCTCGAGTGATGGTGGAGAGGTTTGCTAAGGACC 540 Query 538 ATCTTAGAGCAGATGAGGTCATCGGTACGGAACTGATTGTAAACCGGTTCGGTTTTGTCA 597 |||||||||| |||| |||||||||||| ||| ||||||| ||||||||||||||||||| Sbjct 541 ATCTTAGAGCCGATGTGGTCATCGGTACCGAAGTGATTGTGAACCGGTTCGGTTTTGTCA 600 Query 598 CCGGTTTGATTCGCGAAACGGATGTTGATCAGTCTGCTTTGAACCGTGTCGCTAATTTGT 657 |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 601 CCGGTTTGATACGTGAAACCGATGTTGATCAGTCTGCTTTGAACCGTGTCGCTAATTTGT 660 Query 658 TTGTTGGTCGGAGGCCTCAACTAGGTCTTGGAAAACCGGCTTTGACCGCCTCTACAAATT 717 ||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||| || Sbjct 661 TTGTTGGTCAGAGGCCTCAACTAGGTCTTGGAAGACCGGCTGTGACCGCTTCTACAACTT 720 Query 718 TCTTATCGTTATGTGAGGAGCATATTCATGCACCAATCCCGGAGAACTACAACCACGGTG 777 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 721 TCTTATCGTTATGTGAGGAGCATATTCCTGCACCAATCCCGGAGAACTACAACCACGGTA 780 Query 778 ACCAACAACTTCAGCTACGTCCACTTCCGGTGATATTTCACGACGGAAGACTAGTGAAGC 837 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 781 ACCAACAACTTCAGCTACGTCCACTTCCGGTGATATTTCACGACGGACGACTAGTGAAGC 840 Query 838 GGCCAACGCCGGCCACCGCTCTCATCATCCTCCTTTGGATCCCATTTGGAATCATTCTCG 897 |||||||||| |||||||||||| |||||||||||||||||||| |||| |||| || | Sbjct 841 GGCCAACGCCAGCCACCGCTCTCCTCATCCTCCTTTGGATCCCACTTGGGATCACACTAG 900 Query 898 CCGTGATCCGGATCTTTCTTGGAGCCGTCCTCCCATTGTGGGCCACACCTTACGTCTCTC 957 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 901 CCGTGATCCGGATCTTTCTTGGAGCCATCCTCCCATTGTGGGCCACACCTTACGTCTCTC 960 Query 958 AGATATTCGGTGGCCATATCATCGTCAAAGGAAAGCCTCCTCAGCCACCGGCGGCTGGAA 1017 ||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 961 AGATATTTGGCGGCCATATCATCGTCAAAGGCAAGCCTCCTCAGCCACCGGTTGCTGGAA 1020 Query 1018 AATCCGGCGTGCTCTTTGTGTGTACTCACAGAACCCTAATGGACCCTGTGGTATTATCTT 1077 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 1021 AATCCGGCGTGCTCTTTGTGTGTACTCATAGAACCCTAATGGACCCGGTGGTATTATCCT 1080 Query 1078 ATGTCCTCGGACGTAGCATCCCAGCCGTTACTTACTCAATCTCGCGCTTATCAGAGATCT 1137 |||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 1081 ATGTGCTCGGACGTAGCATCCCAGCCGTTACTTACTCGATTTCGCGGTTATCAGAGATCT 1140 Query 1138 TATCTCCCATTCCAACCGTCCGATTGACAAGAATCCGAGATGTGGATGCGGCTAAGATCA 1197 ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1141 TATCTCCGATTCCAACCGTCCGATTGACAAGAATCCGAGATGTAGACGCGGCTAAGATCA 1200 Query 1198 AACAACAACTGTCAAAAGGAGATCTAGTGGTTTGTCCTGAGGGAACCACTTGTCGTGAAC 1257 ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1201 AACAACAGCTGTCCAAAGGAGATCTAGTGGTCTGTCCTGAGGGAACCACTTGTCGTGAAC 1260 Query 1258 CGTTTTTGTTAAGATTCAGCGCGCTTTTCGCTGAGTTAACGGATAGGATTGTTCCGGTTG 1317 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1261 CGTTTTTGTTAAGATTCAGCGCACTTTTCGCCGAGTTAACGGATAGGATTGTTCCGGTTG 1320 Query 1318 CGATGAACTACAGAGTCGGATTCTTCCACGCGACTACAGCGAGAGGCTGGAAGGGTTTGG 1377 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 1321 CGATGAATTACAGAGTTGGATTCTTCCACGCGACCACAGCGAGAGGCTGGAAAGGTTTAG 1380 Query 1378 ACCCAATTTTCTTCTTCATGAACCCAAGACCGGTTTACGAGATTACGTTCTTGAACCAGC 1437 |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1381 ACCCGATTTTCTTCTTCATGAACCCAAGACCGGTTTACGAGGTTACGTTCTTGAATCAGC 1440 Query 1438 TTCCTATGGAGGCAACATGTTCGTCCGGGAAGAGCCCGCATGACGTGGCGAACTATGTTC 1497 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1441 TTCCTATGGAGGCAACATGTTCGTCCGGGAAGAGCCCGCATGACGTGGCAAACTATGTTC 1500 Query 1498 AGAGAATCTTGGCGGCTACGTTAGGGTTTGAGTGCACCAACTTCACAAGAAAAGATAAGT 1557 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1501 AGAGAATCTTGGCGGCTACGTTAGGGTTTGAGTGCACCAACTTCACAAGAAAAGACAAGT 1560 Query 1558 ATAGGGTTCTCGCTGGAAACGATGGAACGGTGTCGTACTTGTCGTTGCTAGACCAATTGA 1617 ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 1561 ATAGGGTTCTCGCTGGAAACGATGGAACGGTGTCGTATTTGTCGTTGATTGACCAATTGA 1620 Query 1618 AGAAGGTGGTTAGCACTTTCGAGCCTTGTCTCCATTGAAAATACTAGAAGT-ATAGATCA 1676 |||||||||| ||||||| ||||||| ||||||||||| |||| | || || ||||| Sbjct 1621 AGAAGGTGGTGGGCACTTTTGAGCCTTTTCTCCATTGAAT-TACTCCA-GTTATCGATCA 1678 Query 1677 TCCGATGATTTTCTCTCTGTTTTAATATATTAGATCAGTAGTTTCAAA 1724 |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1679 TCCGATGATTTTCTCTTTGTTTTAATATATTAGATCAGTAGTTTCAAA 1726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72485736235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5