BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11430.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478480 jgi|Araly1|478480|fgenesh2_kg.3__1181__AT3G11430.1 2649 0.0
> Ahg478480 jgi|Araly1|478480|fgenesh2_kg.3__1181__AT3G11430.1
Length=1822
Score = 2649 bits (1434), Expect = 0.0
Identities = 1631/1728 (94%), Gaps = 6/1728 (0%)
Strand=Plus/Plus
Query 1 CAAATACGGTAGGTGCAATACTGATAAACTGCCATTCCCATTGCATTAGACGCTAGTCAA 60
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAATTACGGTAGGTGCAATATTGATAAACTGCCATTCCCATTGCATTAGACGCTAGTCAA 60
Query 61 TCCAAACCTTATAACATAAAAAGTTATAGTCCA--TTTCTTTCATATCCAATCGAGTCAA 118
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 61 TCCAAACCTTATAACATAAAACGTTATAGTACATTTTTCTTTCATATCCAATCGAGTCAA 120
Query 119 AA-TAATATTCGAGCAAAAAACAAAAGAAATGGTTATGGAGCAAGCTGGAACGACATCGT 177
|| || ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 121 AATTATTATTCGATCAAAAAACAAAAGCAATGGTTATGGAGCAAGCTGGAACGACACCGT 180
Query 178 ATTCGGTCGTGTCAGAGTTTGAAGGAACAATACTGAAGAACGCAGATTCATTCTCTTACT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATTCGGTCGTGTCAGAGTTTGAAGGAACAATACTGAAGAACGCAGATTCATTCTCCTACT 240
Query 238 TCATGCTCGTAGCCTTCGAAGCAGCTGGTCTAATTCGTTTCGCTATCTTGTTGTTTCTAT 297
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCATGCTCGTAGCCTTCGAAGCATCTGGTCTAATTCGTTTCGCTATCTTGTTGTTTCTAT 300
Query 298 GGCCCGTAATCACACTCCTTGACGTTTTCAGCTACAAAAACGCAGCTCTCAAGCTCAAGA 357
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 301 GGCCCATAATCACACTCCTTGACGTTTTCAGCTACAAAAACGCCGCTCTCAAGCTCATGA 360
Query 358 TTTTTGTAGCCACTGTTGGTCTACGTGAACCGGAGATCGAATCAGTGGCTAGAGCCGTTC 417
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| |
Sbjct 361 TTTTTGTAGCCACTGTTGGTTTACGTGAACCAGAGATCGAATCGGTGGCTAGAGCCGTCC 420
Query 418 TGCCAAAATTCTACATGGACGACGTAAGCATGGACACGTGGAGGGTTTTCAGCTCGTGTA 477
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TGCCAAAGTTCTACATGGATGACGTAAGCATGGACACGTGGAGGGTTTTTAGCTCGTGTA 480
Query 478 AGAAGAGGGTCGTGGTCACGAGAATGCCTCGAGTTATGGTGGAGAGGTTTGCTAAGGAGC 537
| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 481 AAAAGAGGGTCGTGGTGACAAGAATGCCTCGAGTGATGGTGGAGAGGTTTGCTAAGGACC 540
Query 538 ATCTTAGAGCAGATGAGGTCATCGGTACGGAACTGATTGTAAACCGGTTCGGTTTTGTCA 597
|||||||||| |||| |||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 541 ATCTTAGAGCCGATGTGGTCATCGGTACCGAAGTGATTGTGAACCGGTTCGGTTTTGTCA 600
Query 598 CCGGTTTGATTCGCGAAACGGATGTTGATCAGTCTGCTTTGAACCGTGTCGCTAATTTGT 657
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCGGTTTGATACGTGAAACCGATGTTGATCAGTCTGCTTTGAACCGTGTCGCTAATTTGT 660
Query 658 TTGTTGGTCGGAGGCCTCAACTAGGTCTTGGAAAACCGGCTTTGACCGCCTCTACAAATT 717
||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||| ||
Sbjct 661 TTGTTGGTCAGAGGCCTCAACTAGGTCTTGGAAGACCGGCTGTGACCGCTTCTACAACTT 720
Query 718 TCTTATCGTTATGTGAGGAGCATATTCATGCACCAATCCCGGAGAACTACAACCACGGTG 777
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TCTTATCGTTATGTGAGGAGCATATTCCTGCACCAATCCCGGAGAACTACAACCACGGTA 780
Query 778 ACCAACAACTTCAGCTACGTCCACTTCCGGTGATATTTCACGACGGAAGACTAGTGAAGC 837
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 ACCAACAACTTCAGCTACGTCCACTTCCGGTGATATTTCACGACGGACGACTAGTGAAGC 840
Query 838 GGCCAACGCCGGCCACCGCTCTCATCATCCTCCTTTGGATCCCATTTGGAATCATTCTCG 897
|||||||||| |||||||||||| |||||||||||||||||||| |||| |||| || |
Sbjct 841 GGCCAACGCCAGCCACCGCTCTCCTCATCCTCCTTTGGATCCCACTTGGGATCACACTAG 900
Query 898 CCGTGATCCGGATCTTTCTTGGAGCCGTCCTCCCATTGTGGGCCACACCTTACGTCTCTC 957
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 CCGTGATCCGGATCTTTCTTGGAGCCATCCTCCCATTGTGGGCCACACCTTACGTCTCTC 960
Query 958 AGATATTCGGTGGCCATATCATCGTCAAAGGAAAGCCTCCTCAGCCACCGGCGGCTGGAA 1017
||||||| || |||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 961 AGATATTTGGCGGCCATATCATCGTCAAAGGCAAGCCTCCTCAGCCACCGGTTGCTGGAA 1020
Query 1018 AATCCGGCGTGCTCTTTGTGTGTACTCACAGAACCCTAATGGACCCTGTGGTATTATCTT 1077
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1021 AATCCGGCGTGCTCTTTGTGTGTACTCATAGAACCCTAATGGACCCGGTGGTATTATCCT 1080
Query 1078 ATGTCCTCGGACGTAGCATCCCAGCCGTTACTTACTCAATCTCGCGCTTATCAGAGATCT 1137
|||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1081 ATGTGCTCGGACGTAGCATCCCAGCCGTTACTTACTCGATTTCGCGGTTATCAGAGATCT 1140
Query 1138 TATCTCCCATTCCAACCGTCCGATTGACAAGAATCCGAGATGTGGATGCGGCTAAGATCA 1197
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1141 TATCTCCGATTCCAACCGTCCGATTGACAAGAATCCGAGATGTAGACGCGGCTAAGATCA 1200
Query 1198 AACAACAACTGTCAAAAGGAGATCTAGTGGTTTGTCCTGAGGGAACCACTTGTCGTGAAC 1257
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 AACAACAGCTGTCCAAAGGAGATCTAGTGGTCTGTCCTGAGGGAACCACTTGTCGTGAAC 1260
Query 1258 CGTTTTTGTTAAGATTCAGCGCGCTTTTCGCTGAGTTAACGGATAGGATTGTTCCGGTTG 1317
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1261 CGTTTTTGTTAAGATTCAGCGCACTTTTCGCCGAGTTAACGGATAGGATTGTTCCGGTTG 1320
Query 1318 CGATGAACTACAGAGTCGGATTCTTCCACGCGACTACAGCGAGAGGCTGGAAGGGTTTGG 1377
||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1321 CGATGAATTACAGAGTTGGATTCTTCCACGCGACCACAGCGAGAGGCTGGAAAGGTTTAG 1380
Query 1378 ACCCAATTTTCTTCTTCATGAACCCAAGACCGGTTTACGAGATTACGTTCTTGAACCAGC 1437
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1381 ACCCGATTTTCTTCTTCATGAACCCAAGACCGGTTTACGAGGTTACGTTCTTGAATCAGC 1440
Query 1438 TTCCTATGGAGGCAACATGTTCGTCCGGGAAGAGCCCGCATGACGTGGCGAACTATGTTC 1497
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1441 TTCCTATGGAGGCAACATGTTCGTCCGGGAAGAGCCCGCATGACGTGGCAAACTATGTTC 1500
Query 1498 AGAGAATCTTGGCGGCTACGTTAGGGTTTGAGTGCACCAACTTCACAAGAAAAGATAAGT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1501 AGAGAATCTTGGCGGCTACGTTAGGGTTTGAGTGCACCAACTTCACAAGAAAAGACAAGT 1560
Query 1558 ATAGGGTTCTCGCTGGAAACGATGGAACGGTGTCGTACTTGTCGTTGCTAGACCAATTGA 1617
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 1561 ATAGGGTTCTCGCTGGAAACGATGGAACGGTGTCGTATTTGTCGTTGATTGACCAATTGA 1620
Query 1618 AGAAGGTGGTTAGCACTTTCGAGCCTTGTCTCCATTGAAAATACTAGAAGT-ATAGATCA 1676
|||||||||| ||||||| ||||||| ||||||||||| |||| | || || |||||
Sbjct 1621 AGAAGGTGGTGGGCACTTTTGAGCCTTTTCTCCATTGAAT-TACTCCA-GTTATCGATCA 1678
Query 1677 TCCGATGATTTTCTCTCTGTTTTAATATATTAGATCAGTAGTTTCAAA 1724
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1679 TCCGATGATTTTCTCTTTGTTTTAATATATTAGATCAGTAGTTTCAAA 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5