BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11440.1
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478481 jgi|Araly1|478481|fgenesh2_kg.3__1182__AT3G11440.1 2942 0.0
Ahg487412 jgi|Araly1|487412|fgenesh2_kg.6__546__AT5G06100.3 730 0.0
> Ahg478481 jgi|Araly1|478481|fgenesh2_kg.3__1182__AT3G11440.1
Length=1959
Score = 2942 bits (1593), Expect = 0.0
Identities = 1841/1957 (94%), Gaps = 32/1957 (2%)
Strand=Plus/Plus
Query 23 ACTTTGATCTCTTTCTCCATCCTTGTCTCTGTCGATTCTCTGAGATATCTTCTCTCGAGC 82
|||| |||||||||||| || | |||| || ||| |||||||||||||| |||||||
Sbjct 1 ACTTGGATCTCTTTCTCTAT-C---TCTC--TCCATTTTCTGAGATATCTTCGCTCGAGC 54
Query 83 TTTTTCCCGCGTTATCTCTCTCCCACTCCTGGTTGGAGCTTGATGTCTAAATTGTTATTG 142
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 55 --TTTCCCGCGTTATCTCTCTCCCTCTCCTGGTGGGAGCTTGATGTCTAAATTGTTCTTG 112
Query 143 AACTGCTGGAGTCTGTCTTGCTTTAAGTAGAAAGAGATGAGTTACACGACGGCGACTGCT 202
|| ||||||||||||| |||| ||||||||||| ||||||||||||| || | || | |
Sbjct 113 AAGTGCTGGAGTCTGTGTTGCGTTAAGTAGAAATAGATGAGTTACACAACAACCACGGTT 172
Query 203 GATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTCCTGATAGTATT 262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 173 GATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTGCTGATAGTATT 232
Query 263 AGCAATGGCTGCAGAAGTAGAGGGAAAAGAAGTGTCCTGAAGAAAGGACCATGGACTTCA 322
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 233 GGCAATGGCTGCAGAAGTAGAGGGAAAAGCCGTGTCCTGAAGAAAGGACCATGGACATCA 292
Query 323 ACTGAAGACGGGATTTTAATTGATTATGTAAAGAAGCACGGCGAGGGTAACTGGAATGCT 382
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 293 ACTGAAGATGGGATTTTAATTGATTATGTAAAGAAGCATGGCGAGGGTAACTGGAATGCT 352
Query 383 GTGCAGAAACACACTAGCCTGGCCCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAAT 442
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 353 GTGCAGAAACACACGAGCCTGGCCCGGTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAAT 412
Query 443 CATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTT 472
Query 503 GAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGA 532
Query 563 ACAGATAATGAGATAAAGAATTATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 533 ACAGATAATGAGATAAAGAATTATTGGAACACTCGTATCAAGAGGAGACAACGTGCAGGC 592
Query 623 TTACCACTTTACCCTCCTGAAATCTATGTTGATGACCTTCATTGGAGCGAAGAGTATACA 682
|||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||
Sbjct 593 TTACCACTTTACCCTCCTGAAATCCATGTTGAAGACTTTCAGTGGAGCGAAGAGTATACA 652
Query 683 AAGAGTAATATCATAAGAGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGG 742
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 653 AAGAGTAATATCATAAGAGTAGATAGAAGAAGA---CATCAAGATTTCTTGCAGTTGGGG 709
Query 743 AATTCTAAAGATAATGTCTTATTTGACGATCTAAATTTTGCTGCTAGCTTGTTACCTGCC 802
||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 710 AATTCCAAAGCTAATGTCTTATTTGATGATCTAAATTTTGCTGCTAGCTTGTTACCTGCC 769
Query 803 GCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCGCAAGTTCTTCC 862
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 770 GCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCCCAAGTTCTTCT 829
Query 863 CGGTATGAGAGCTACATGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGA 922
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CGGTATGAAAGCTACATGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGA 889
Query 923 TCTCGGTTTCCCATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACACTTT 982
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 890 TCTCGGTTTCCTATGTGCAGCAGTAACATAAAGCATGAATTCCAATATCCGGAACACTTT 949
Query 983 CAGAATACGGCTGT-ACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGA 1041
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CAGAATACTGCT-TCACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGA 1008
Query 1042 TCATCATCCTTATGAAAACCAACATTCGTCTCATATGATGATGGTTCCTGATAGCCATAC 1101
||||| |||||| | ||||||||||| ||| |||||||||| | || |||||||||||
Sbjct 1009 TCATCCTCCTTACGGAAACCAACATTTATCTGATATGATGAT--T-CCAGATAGCCATAC 1065
Query 1102 AGTTACGTATGGCATGCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCT 1161
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1066 CGTTATGTATGGCATGCTTCCTACTTCTAAGCCCTCGTTTGGGGCAGTGAAGCTGGAGCT 1125
Query 1162 CCCTTCATTCCAATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCACC 1221
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1126 CCCTTCATTCCAATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACACCGTCACC 1185
Query 1222 TCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCACCATCGCA 1281
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1186 TCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCATCATCGCA 1245
Query 1282 GGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCA 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCA 1305
Query 1342 TGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTGTTGATGTCATCACCCCAGAAGAG 1401
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1306 TGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTGTTGATGTCATCACCCAAGAAGAG 1365
Query 1402 TTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCAGCGAAAA 1461
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1366 TTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCGGC-AC-- 1422
Query 1462 CCTGATCAAATCAGGAGAATATGAAGATTCCCAAAAGTATTTGGGTCGCTCCGAGATTAC 1521
||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1423 CCTGATCAAATCAGGTGAATATGAAGATTCCCAAAAGAATTTGACTCGCTCCGAGATTAC 1482
Query 1522 AA-GTCCC-TCGCAACTTAGTGCAGGTGGTTTTTCATCAGCTTTTGCAGGGAATGTTGTA 1579
|| | ||| | ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1483 AATG-CCCAT-GCAACTTAGCGCAGGTGGAATTTCATCAGCTTTTGCAGGGAATGTTGTA 1540
Query 1580 AAGACAGAAGAGTTGGATCAGGTTTGGGAACCAAAGAGAGTTGATA-TAACACGGCCTGA 1638
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1541 AAGACAGAAGAGTTTGATCAGGTTTGGGAACCAAAGAGAGTTGATACTA-CACGGCCTGA 1599
Query 1639 TGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTATGGCATTGTTAGTGACACAAG 1698
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1600 TGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTTTGGGATTGTTAGAGACACAAG 1659
Query 1699 CAGCATGAGTGATGCGCTTGCACTTCTT---GGTGGTGACGACATTGGGAACAGTTACGT 1755
||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1660 CAGCATGAGCGATGCGCTTGCGCTTCTTCTTGGTGGTGACGACACTGGGAACAGTTACGT 1719
Query 1756 GACTGTTGGGTCATCATCAGGTCAAGCACCACGAGGCGTCGGGTCTTATGGATGGACCAA 1815
||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||| ||
Sbjct 1720 GACTGTTGGGTCATCATCAGGTCAAACACCACGAGGCGTTGGGTCATGTGGATGGACTAA 1779
Query 1816 TATGCCTCCTGTTTGGTCGCTGTAACAAAATGAACCATATCACACAATTTGAATCTTTCT 1875
||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1780 TATGCCTCCTGTTTGGTCGTTGTAACGAAATGAACCATATCACAC--TTTGAATCTTTCT 1837
Query 1876 GTATTTTCATGCACCTGGCTTACATGACTTGGTGGTTTGTTATAGTTGAGAGAAGATTTG 1935
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1838 GTATTTTCATGAAACTGGCTTACATGACTTGC-GGTTTGTTATAGTTGAGAGAAGATTTA 1896
Query 1936 TGGACTTGGTAAAAAT-TTGGATTTTCTTCACCTGAT 1971
||||||||||||||| ||||||||||||||||||||
Sbjct 1897 TGGACTTGGTAAAAAAATTGGATTTTCTTCACCTGAT 1933
> Ahg487412 jgi|Araly1|487412|fgenesh2_kg.6__546__AT5G06100.3
Length=1819
Score = 730 bits (395), Expect = 0.0
Identities = 920/1162 (79%), Gaps = 81/1162 (7%)
Strand=Plus/Plus
Query 232 CCATAATGAATCACCAGCTCCTGATAGTATTA-GCAA-TGGCTGCAGAAGTAGA-GGGAA 288
||||||||| ||||||||| ||||| | | | | || || ||||||||||||| ||| |
Sbjct 256 CCATAATGAGTCACCAGCTGCTGAT-G-ACAATGGAAGTGACTGCAGAAGTAGATGGG-A 312
Query 289 AAG-AAGTGTC-CTGAAGAAAGGACCATGGACTTCAACTGAAGACGGGATT-TTAATTGA 345
| | | || | ||||||||||| ||||||| ||| ||||||| | ||| || |||||
Sbjct 313 AGGTCA-TG-CTCTGAAGAAAGGGCCATGGAGTTCTGCTGAAGATGATATTCTT-ATTGA 369
Query 346 TTATGTAAAGAAGCACGGCGAGGGTAACTGGAATGCTGTGCAGAAACACACTAGCCTGGC 405
||||| || ||||| ||||| |||||||||||||||||||||| ||| || || ||
Sbjct 370 CTATGTGAATAAGCATGGCGAAGGTAACTGGAATGCTGTGCAGAGACATACGGGCTTGTT 429
Query 406 CCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAA 465
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 430 TCGTTGTGGTAAAAGCTGTCGTCTAAGGTGGGCTAATCATCTGAGGCCAAATTTGAAGAA 489
Query 466 AGGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAA 525
|||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 490 AGGAGCTTTTAGCCAAGAAGAAGAACAGCTTATTGTTGAATTGCATGCCAAGATGGGTAA 549
Query 526 TAAATGGGCACAG-ATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAAAGAATT 584
|| |||||| | | ||||||| ||||| ||||| ||||| ||||| |||||||||||||
Sbjct 550 TAGATGGGCGC-GTATGGCTGCGCATTTGCCTGGCCGAACGGATAACGAGATAAAGAATT 608
Query 585 ATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGCTTACCACTTTACCCTCCTGAAA 644
||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||
Sbjct 609 ATTGGAACACTCGTATCAAGAGGCGACAACGAGCTGGTTTACCACTTTATCCTCCTGAAA 668
Query 645 T-CTATGTTGATG-ACCTTCATTGGAG-CGAAGAGTATACAAAGAGTA-A-TATCATAAG 699
| | ||||||| | || | ||||||| | |||||||| | ||||||| | | | || |
Sbjct 669 TGC-ATGTTGAAGCAC-TAGATTGGAGTC-AAGAGTATGCCAAGAGTAGAGT-T-ATG-G 722
Query 700 AGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCTAAAGATAATGT 759
| ||| ||| | ||| ||||||||||||||||||| |||||| || | || ||||||
Sbjct 723 -G-AGA-AGAT-A-GAATACATCAAGATTTCTTGCAGCTGGGGAGTTGTGAATCTAATGT 777
Query 760 CTTATTTGAC-GATCTAAATTTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAG 818
||| ||||| | ||| || ||| | | | | || |||||| |||| ||||||| |||
Sbjct 778 CTTCTTTGATAG-TCTTAACTTTACAG--A-CATGGTACCTGGTGCTTTTGACCTAGCAG 833
Query 819 ATTTGGTTGCATGCAACA-TGCTAGG-AACTGGCGCAAGTTCTTCC-CGGTATGAGAGCT 875
|| || ||| | ||| | | || || || ||| ||||||||| || || ||||| | ||
Sbjct 834 ATATGACTGCCTACAAAAAT-CTGGGTAA-TGGTGCAAGTTCT-CCTCGATATGAAAACT 890
Query 876 ACATGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGATCTCGGT-T-TCC 933
|||| |||||||| |||| ||| | |||| | | |||||||||| || | | | | |||
Sbjct 891 TCATGACACCAATAATGCCCTCCTCGAAGCGACTTTGGGAATCTGAAT-T-GTTGTATCC 948
Query 934 CATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACACTTTCAGAATACGGC 993
||| ||||||| | ||||||| |||||| ||||| ||||| || ||||| || |
Sbjct 949 TGGGTGTAGCAGTACCGTAAAGCAAGAATTCTTGTCGCCTGAACAATTCCAGAACACATC 1008
Query 994 TGTACAGAAGAATCCCAGATCTTGCAGTATCTC-G--CCTTGTGATGTTGATCATCATC- 1049
| ||| |||| | ||| | |||||||| |||| | |||||||||||||| |||| ||
Sbjct 1009 TCCACAAAAGATTTCCAAAACTTGCAGTTTCTCAGTTCCTTGTGATGTTGAGCATCCTCT 1068
Query 1050 CTTATGAAAACCAACATTCGTCTCATATGATGATGGTTCCTGATAGCCATACAGTTACGT 1109
|| ||| ||||| |||||| || | | ||||| ||| ||||||||||| ||||
Sbjct 1069 CT-ATGGAAACCGACATTCACCTG-T-T-ATGAT--TTCA-GATAGCCATACCCATACGG 1121
Query 1110 ATGGCAT-GCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCA 1168
||||||| | |||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1122 ATGGCATTGT-TCCTTCTTCTAAGCCCTCATATGGGGCAGTGAAGCTGGAGCTCCCTTCA 1180
Query 1169 TTCCAATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCA-C-C-TCCA 1225
||||||||||||||||| | ||||||| |||||||||| | || |||| | | ||||
Sbjct 1181 TTCCAATATTCAGAAACAA---CATTTGACCAGTGGAAGAA-A-TC-GTCATCTCCTCCA 1234
Query 1226 CACTCAGATCTCCTTGA-CTCTGTTGATGCCTATATTCAATCTCCACCACCATCG-CAGG 1283
||||| ||||| ||||| | || ||||| | || ||||| |||||||||||| | | ||
Sbjct 1235 CACTCTGATCTTCTTGATCCCT-TTGATACTTACATTCAGTCTCCACCACCACCTACGGG 1293
Query 1284 TAGAG--GAGTCAGATTG-T-TTCTC-TTCATGCGACACCGGCCTACTAGATATGTTACT 1338
|||| |||||||||| | ||| || || | || || || || |||||||| ||
Sbjct 1294 GAGAGAAGAGTCAGATTTATATTCAAGTTT-TG--ATACTGGTCTGCTCGATATGTTGCT 1350
Query 1339 TCATG-AGGCCAAGATCA-AAA 1358
|| || |||||||||||| |||
Sbjct 1351 TC-TGGAGGCCAAGATCAGAAA 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75761497305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5