BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11450.1
Length=2432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1 2013 0.0
Ahg940041 jgi|Araly1|940041|scaffold_600585.1 542 6e-153
> Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1
Length=2072
Score = 2013 bits (1090), Expect = 0.0
Identities = 1179/1223 (96%), Gaps = 2/1223 (0%)
Strand=Plus/Plus
Query 241 TTCATCATGCCGAGCCGGAGAAGTGAGTCTGCTATTAGGCTAATTACGTACTCTGAGGAG 300
|||||||||||||||||||||||||||||| | ||| ||| ||||| ||||||||||||
Sbjct 1 TTCATCATGCCGAGCCGGAGAAGTGAGTCTACCGTTAAGCTTATTACATACTCTGAGGAG 60
Query 301 CTTGTGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAAC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGAGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAAC 120
Query 361 CGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCGCTTAAACTGCATGGTTGTGCAGAA 420
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 CGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTTAAATTGCATGGTTGTGCAGAA 180
Query 421 GAACCCACAGACGATGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAGGAATAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACCCACAGACGATGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAGGAATAT 240
Query 481 GTTCCTTCATTCAACTCGTATGCCAACAAAGGAAAGAAGAAGTCTGGTACCCAGCAACAA 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GTTCCTTCATTCAACTCGTATGCCAACAAAGGAAAAAAGAAGTCTGGTACCCAGCAACAA 300
Query 541 GACCACTATGCGTTGTTGGGTTTGAGCAATCTAAGATATCTTGCGACGGAAGATCAGATT 600
||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 301 GACCACTATGCCTTGTTGGGTTTGAGCAATTTAAGATATCTTGCGACAGAAGATCAGATT 360
Query 601 AGGAAAAGTTATCGTGAAGCTGCATTGAAGCATCATCCTGATAAACTCGCTAGTCTCCTT 660
|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 361 AGGAAAAGCTATCGTGAAGCTGCGCTGAAGCATCATCCTGATAAACTCGCTACTCTCCTT 420
Query 661 CT-GTTAGAGGAAACAGAAGAAGCCAAGGAGGCaaaaaaaGATGAGATTGAATCTCGCTT 719
|| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 CTCGC-AGAGGAAACAGAAGAAGCCAAGGAGGCAAAAAAAGATGAGATAGAATCTCGCTT 479
Query 720 CAAAGCGATTCAAGAAGCATATGAGGTATTGATGGACCCAACTAGGAGAAGAATTTTTGA 779
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 480 CAAAGCGATTCAAGAAGCATATGAGATATTGATGGACCCAACAAGGAGAAGAATTTTTGA 539
Query 780 CTCCACTGATGAGTTTGATGACGAGGTCCCATCGGATTGCTTGCCGCAAGACTTTTTCAA 839
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 540 CTCCACTGATGAGTTTGATGACGAGGTTCCATCAGATTGCTTGCCGCAAGACTTTTTCAA 599
Query 840 GGTGTTTGGTCCAGCGTTTAAGAGAAATGCTAGGTGGTCAGTGAATCAGCGTATTCCAGA 899
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTGTTTGGTCCAGCTTTTAAAAGAAATGCTAGGTGGTCAGTGAATCAGCGTATTCCAGA 659
Query 900 TTTGGGAGATGAAAACACACCACTTAAAGATGTTGATAAGTTCTACAACTTTTGGTACGC 959
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTGGGAGATGAAAACACAACACTTAAAGATGTTGATAAGTTCTACAACTTTTGGTACGC 719
Query 960 TTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGATCTTGAACAAGCAGATTC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGATCTTGAACAAGCAGATTC 779
Query 1020 CCGTGAAGAACGTAGGTGGATGGAAAAGGAGAATGCaaaaaaaaCTGTGAAGGCTAGAAA 1079
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 CCGTGAAGAACGGAGGTGGATGGAGAAGGAGAATGCAAAAAAAACTGTGAAGGCTAGAAA 839
Query 1080 GGAGGAGCATGCTCGAATCAGGACTCTTGTTGACAATGCGTATagaaaagacccgagaat 1139
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 GGAGGAGCATGCTCGAATCCGGACTCTTGTTGACAATGCGTATAGAAAAGACCCGAGGAT 899
Query 1140 tgtgaaaagaaaagaggaagaaaaggctgagaagcaacagaaaaaagatgcaaaaattca 1199
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 900 TGTGAAAAGAAAAGAGGAAGAAAAGGCTGAGAAGCAACAGAAAAAAGAAGCAAAGCTTCT 959
Query 1200 ggccaagaagaagcaggaagaggacgctgctattgctgctgaagaagagaaaaggcgaaa 1259
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGCCAAGAAGAAGCAGGCAGAGGACGCTGCTATTGCTGCTGAAGAAGAGAAAAGGCGAAA 1019
Query 1260 agaagaagaagaaaagcgagcagcagaatctgcacaacaacaaaagaaaactaaggaaag 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAAGAAGAAGAAAAGCGAGCAGCAGAATCTGCACAACAACAAAAGAAAACTAAGGAAAA 1079
Query 1320 AGAGAAGAAGCTCTTACGCAAAGAACGAAATCGTCTTAGAACTCTCTCAGCTCCTCTCGT 1379
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 AGAGAAGAAGCTCTTACGCAAAGAACGGAATCGTCTTAGAACTCTCTCAGCTCCTCTCGT 1139
Query 1380 GGCTCAGCGTCTGCTTGACATCTCTGAGGAAGATATAGAGAATCTATGCATGTCACTTAA 1439
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1140 GGCTCAGCGTCTGCTTGGCATCTCCGAGGAAGATATAGAGAATCTATGCATGTCACTAAA 1199
Query 1440 CACCGAGCAGTTGCAGAATCTAT 1462
|||||||||||| |||| |||||
Sbjct 1200 CACCGAGCAGTTACAGACTCTAT 1222
Score = 1373 bits (743), Expect = 0.0
Identities = 817/853 (96%), Gaps = 4/853 (0%)
Strand=Plus/Plus
Query 1514 ATGGATGCAACAGTAGTAGAAATGATGAAGCCGAATCTAAAGAAAAAGTAAGTAAGAAGA 1573
|||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 1223 ATGGATGCGACAGTAGTAGAAACGACGAAGCCGAATCTAAAGAAAAAGAAAGTAAGAAGA 1282
Query 1574 CCAACGGTGGCACAGAGCCTACAACCCGAGTTTCACAGTTAGATAGTAGCACTCAGAAGA 1633
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1283 CCAACGGTGGCACAGAGCCTACACCCCGAGTTTCTCAGTTAGATAGTAGCACTCAGAAGA 1342
Query 1634 AACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGATAAAATATCCAA 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGATAAAATATCCAA 1402
Query 1694 AGGGGACATCGCGGAGATGGGAAGTTATTTCAGAGTACATTGGTACAGGAAGATCTGTAG 1753
|||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1403 AGGGGACATCTCGAAGATGGGAAGTTGTTTCAGAGTACATTGGTACAGGAAGATCGGTAG 1462
Query 1754 AGGAAATTCTGAAAGCAACTAAAACAGTTCTCCTGCAAAAACCAGATTCAGCTAAAGCAT 1813
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1463 AGGAGATTCTGAAAGCAACTAAAACAGTTCTTCTCCAAAAACCAGATTCAGCTAAAGCAT 1522
Query 1814 TCGATTCTTTCCTCGAGAAGAGGAAACCCTCTGCTTCAATCACATCCCCTCTCTCCACAA 1873
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1523 TCGATTCTTTCCTCGAGAAGAGGAAACCCTCTGCTTCAATCTCATCCCCTCTCTCCACAA 1582
Query 1874 GAGAGGAGCTCGGAGAATCTCTACCCACAATGACGACCACAACAAATGCAAAGCCCTCTA 1933
||||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||
Sbjct 1583 GAGAGGAGCTCGGAGAATCTCTACCTACGGTGACTACCACGGCAAATGCAAAACCCTCTA 1642
Query 1934 AAGAGACTGTTGTGGGGAAAAGCTCGAGCAGTCAAAGCTCAGACAACAATGGTGAAGTAG 1993
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1643 GAGAGACTGTTGTGGGGAAGAGCTCGAGCAGTCAAAGCTCCGACAACAATGGTGAAGTAA 1702
Query 1994 GTGGAAGTTCAGACGCAGATAGTTGGTCGACTGTGCAAGAAAGAGCTTTGGTTCAAGCTT 2053
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1703 GTGGAAGTTCAGACGCAGATAGTTGGTCAACTGTGCAAGAAAGAGCTTTGGTTCAAGCTT 1762
Query 2054 TAAAGACATTCCCGAAAGAGACAAGCCAAAGATGGGAGAGAGTAGCTGCAGCTGTCCCTG 2113
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1763 TAAAGACATTCCCGAAAGAGACAAGCCAAAGATGGGAGAGAGTAGCTGCAGCTGTTCCTG 1822
Query 2114 GTAAAACGATGAACCAATGCAAGAAGAAGTTTGCAGAGCTTAAGGAAATCATTAGAAACA 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 GTAAAACGATGAACCAATGCAAGAAGAAGTTTGCAGAGCTTAAGGAAATCATTAGAAACA 1882
Query 2174 AGAAAACCGGAGTATGAGGTAAAATCATTTCGGAGTCCCATGAGAATTTTGGGTTTTAAT 2233
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1883 AGAAAACCGGAGTGTGAGGTAAAATCAATTCGGAGTCCCATGAGAATTTTGGGTTTGAAT 1942
Query 2234 CCTCTTGGGGCACCGTTACTTTGCGAGAAGCA-AGACCTAAAACTTTTTTATTATTTGTA 2292
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1943 CCTCTTGGGGCACCGTTACTTTGCGAGAAG-ATAGACCTAAAACTTTTTTATTATTTGTA 2001
Query 2293 ATGATTCATTTCCCTTTGATGTCTCTATATATTGAGAGTGCTGGAGCCACTATTATGGAG 2352
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2002 ATGATTCATTTCCCTTTGTTGTCTCTATATATTGAGAGTGCTGGAGCCACTGTTATGGAG 2061
Query 2353 TATGTTGTTTTTT 2365
||| || ||||||
Sbjct 2062 TAT-TT-TTTTTT 2072
> Ahg940041 jgi|Araly1|940041|scaffold_600585.1
Length=1746
Score = 542 bits (293), Expect = 6e-153
Identities = 560/687 (82%), Gaps = 26/687 (4%)
Strand=Plus/Plus
Query 241 TTCATCATGCCGAGCCGGAGAAGTGAGTCTGCTATTAGGCTAATTACGTACTCTGAG-GA 299
|||||||||| ||| || ||| | | |||||||||| |||| |||||||||| || ||
Sbjct 15 TTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTACGTACTC-CAGTGA 73
Query 300 GCTTGTGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAA 359
||| ||||||| || || ||| ||||| ||||||||||| |||||| ||||| ||||
Sbjct 74 GCTCAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTGTTAAGGCCGTAAA 133
Query 360 CCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCGCTTAAACTGCATGGTTGTGCAGA 419
|||||||||||||||||||||||||||||||||||| || ||||||| ||| ||| || |
Sbjct 134 CCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGCGTGGGTGTACA-A 192
Query 420 AG-AACCCACA-G-ACGA-TGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAG- 474
|| || ||||| | | || ||||| | ||||||||||| | | || || || | |
Sbjct 193 AGGAAGCCACAAGCAAGAATGAAGATACCGATAAGAAAGTCCCAAAGGAGAAGGATA-GT 251
Query 475 GAATATGTTCCTTCAT-TCAACTCGTATGCCAACAAAGGAAAGAAGAAGTCTGGTACCCA 533
|||||| ||||||| | | | |||| || || |||||||||||||||||| || | ||
Sbjct 252 GAATATATTCCTTCCTATGA-CTCGCATAACATCAAAGGAAAGAAGAAGTCGGGGAAGCA 310
Query 534 GCAACAAGACCACTATGCGTTGTTGGGTTTGAGCAATCTAAGATATCTTGCGACGGAAGA 593
||||| || ||||||||||||||||||||| ||||| ||||||||||||| || || ||
Sbjct 311 ACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTGCAACAGAGGA 370
Query 594 TCAGATTAGGAAAAGTTATCGTGAAGCTGCATTGAAGCATCATCCTGATAAACTCGCTAG 653
|||||| || ||||| ||||| ||||||||| |||| ||||| ||||||||||| ||||
Sbjct 371 TCAGATCAGAAAAAGCTATCGCGAAGCTGCACTGAAACATCACCCTGATAAACTTGCTAC 430
Query 654 TCTCCTTCT-GTTAGAGGAAACAGAAGAAGCCAAGGAGGCaaaaaaaGATGAGATTGAAT 712
||| ||||| | | || || ||||||||||| || | || || || |||||||| ||||
Sbjct 431 TCTACTTCTTGCT-GAAGAGACAGAAGAAGCAAAACAAGCCAAGAAGGATGAGATAGAAT 489
Query 713 CTCGCTTCAAAGC-GATTCAAGAAGCATATGAGGTATTGATGGACCCAACTAGGAGAAGA 771
||| |||||| | ||||||||||||||||||||| ||||||||||| || | ||||||
Sbjct 490 CTCACTTCAA-GTTGATTCAAGAAGCATATGAGGTTTTGATGGACCCTACAAAAAGAAGA 548
Query 772 ATTTTTGACTCCACTGATGAGTTTGATGACGAGGTCCCATCGGATTGCTTGC-C-GCAAG 829
|| |||||||| || ||||||||||||||| | |||||| | ||||| | || | |||||
Sbjct 549 ATATTTGACTCTACGGATGAGTTTGATGACAAAGTCCCAACTGATTG-T-GCTCCGCAAG 606
Query 830 ACTTTTTCAAGGTGTTTGGTCCAGCGTTTAAGAGAAATGCTAGGTGGTCAGTGAAT-CAG 888
|||| |||||||| ||||||||||| ||||||||||| || |||||||| | ||| | |
Sbjct 607 ACTTCTTCAAGGTTTTTGGTCCAGCTTTTAAGAGAAACGCAAGGTGGTC-G--AATTC-G 662
Query 889 CGTATT-CCAGATTTGGGAGATGAAAA 914
| | || ||||||||||||||||||||
Sbjct 663 CCT-TTACCAGATTTGGGAGATGAAAA 688
Score = 259 bits (140), Expect = 6e-68
Identities = 224/264 (85%), Gaps = 7/264 (3%)
Strand=Plus/Plus
Query 1630 AAGAAACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGA-TAAAATA 1688
|||| | |||| |||||||||||||||||||| |||||||||||||||| | | || |
Sbjct 1120 AAGAGA-AACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAAAAGGAACAACT-AAGT- 1176
Query 1689 T-CCAAAGGGGACATCGCGGAGATGGGAAGTTATTTCAGAGTACATTGGTACAGGAAGAT 1747
| ||||| || ||||| | ||||||||||| || |||||||||||||||||||||||||
Sbjct 1177 TCCCAAAAGGAACATCTCAAAGATGGGAAGTCATATCAGAGTACATTGGTACAGGAAGAT 1236
Query 1748 CTGTAGAGGAAATTCTGAAAGCAACTAAAACAGTTCTCCTGCAAAAACCAGATTCAGCTA 1807
|||| ||||||||||| || || || |||||||| || || || ||||| || |||||||
Sbjct 1237 CTGTGGAGGAAATTCTCAAGGCTACCAAAACAGTACTTCTCCAGAAACCTGACTCAGCTA 1296
Query 1808 AAGCATTCGATTCTTTCCTCGAGAAGAGGAAACCCT-CTGCTTCAATCACATCCCCTCTC 1866
||||||| |||||||| || |||||||||||||| | ||||||||||| | || ||||||
Sbjct 1297 AAGCATTTGATTCTTTTCTGGAGAAGAGGAAACC-TGCTGCTTCAATCGCCTCTCCTCTC 1355
Query 1867 TCCACAAGAGAGGAGCTCGGAGAA 1890
|| ||| ||||||| |||||||||
Sbjct 1356 TCTACACGAGAGGAACTCGGAGAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91645129470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5