BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11470.2 Length=1155 Score E Sequences producing significant alignments: (Bits) Value Ahg928862 jgi|Araly1|928862|scaffold_301319.1 1288 0.0 > Ahg928862 jgi|Araly1|928862|scaffold_301319.1 Length=952 Score = 1288 bits (697), Expect = 0.0 Identities = 862/941 (92%), Gaps = 13/941 (1%) Strand=Plus/Plus Query 121 AAGAATTTG-TTGGAGCTGATGAGAATCAGAGTCATGTCTCAATTGCAGCGAAGCTTATC 179 |||| |||| |||||||||||||||||||| ||||| || ||||||||||||||||| || Sbjct 11 AAGACTTTGTTTGGAGCTGATGAGAATCAGTGTCATTTCGCAATTGCAGCGAAGCTTCTC 70 Query 180 GATCGAATTGCCTTCACTGGTTCCTCTGC-AACTTCCATCTCGGATGGAGACTCATCTAT 238 || ||||| || ||||| ||| |||| | |||||||||||| |||||||||||||||| Sbjct 71 AATGGAATTTCCATCACTCGTTTCTCT-CAAACTTCCATCTCCAATGGAGACTCATCTAT 129 Query 239 GGTTTATTCGACCAGATGAAGTGAAGAGTACATCTCTTCTAAAACACTACTCTCAACTTC 298 ||| ||||||||||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 130 GGTATATTCGACCAGATGAAGTGAAAATTCCATCTCTTTTAAAACACTACTCTCAACTTC 189 Query 299 TGTCACCAACCGAGAAAGAGAAAG-TTCTTCAGATGCGAGGCGATGAGCTTAAGAAGAAT 357 |||||||| | |||| ||| |||| ||| |||| | |||||||||| ||||||||||||| Sbjct 190 TGTCACCATCTGAGATAGATAAAGTTTC-TCAGCTTCGAGGCGATGCGCTTAAGAAGAAT 248 Query 358 GCTTTGCTTGCTCGAACCTTGGTTCGGACCACCATTGCTAGATGT-ATGACAAACAATGA 416 |||||||||||||||||||||||||| ||||||||||| |||| | | ||||||||||| Sbjct 249 GCTTTGCTTGCTCGAACCTTGGTTCGCACCACCATTGCAAGATATCA-GACAAACAATGC 307 Query 417 AGTCGATCCTAAGG-CCTTGATGTTCAAGAAGAATATGTATGGGAAGCCTGAGGTAGATT 475 |||||||||| || |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 308 AGTCGATCCTC-GGTCCTTGATGTTTAAGAAGAATACATATGGGAAGCCTGAGGTAGATT 366 Query 476 GGCAGAATTATACGAACTGTAATAATCCACCATTGCATTTCAACATTTCTCACACAGATT 535 |||||||||||| |||||||||||| ||||||||||||||||| || || |||||||||| Sbjct 367 GGCAGAATTATAAGAACTGTAATAACCCACCATTGCATTTCAATATCTCCCACACAGATT 426 Query 536 CATTAATTGCCTGTGGGGTGACTGTACACGTTCCGGTTGGTATCGATGTTGAAGACAAGG 595 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 427 CATTAATTGCCTGTGGGGTGACTGTACATGTTCCGGTTGGTATCGATGTTGAAGACAAGG 486 Query 596 AAAGGAAGATTAAACATGATATCTTAGCATTTGCAGAAAGATTTTACTCTGCTGATGAAG 655 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 487 AAAGGAAGATTAAACATGACGTCTTAGCATTTGCAGAAAGATTCTACTCTGCTGATGAAG 546 Query 656 TCAAGTTTTTGTCAACTTTACCGGACCCTGAA-GTTCAGAGAAAGGAATTTATTAAGTTA 714 | ||||||||||||||| |||||||||| ||| || ||| ||||||| |||||||||||| Sbjct 547 TGAAGTTTTTGTCAACTATACCGGACCCGGAAAGT-CAGCGAAAGGAGTTTATTAAGTTA 605 Query 715 TGGACCCTAAAGGAGGCATATGTGAAAGCATTAGGAAAAGGCTTTTCTGCTGCACCTTTT 774 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 606 TGGACTCTAAAGGAGGCATATGTGAAAGCATTAGGAAAAGGGTTTTCTGCTGCACCTTTT 665 Query 775 AATACCTTCACAATCCAGTCCAAGGTTGGAACAAAAGGAGAATACAATCTTTGCAAGATG 834 ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 666 AATACCTTCACAATCCAATCTAAGGCTGGAACAAAAGGAGAATACAATCTTTGCAAGAC- 724 Query 835 A-CTGAAATGACTGCAAGTTCGCTGGAGGAGACAAACAAATGCGATGGAGAATGGAAGTT 893 | ||||||||||| | ||||| |||||| |||||||||| ||| | |||| ||||||||| Sbjct 725 ATCTGAAATGACTACCAGTTCACTGGAGAAGACAAACAATTGCAACGGAGGATGGAAGTT 784 Query 894 TTCCCTTTTGGAGTTGGATGATTCTCATTATGCTGCAATCTGTATTGAAGATGATGAAGC 953 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 785 TTCCCTTTTGGAGTTGGCTGATTCTCATTATGCTGCAATCTGTATTGAAGATGATCAAGC 844 Query 954 TAGTGGAGGAGCTCCTATGAGGGTGATTGTCCGAAAAACCATCCCGTTTGTAGAAGATGA 1013 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 845 TAGTGGAGGAGCTCCTATGAGGGTGATTGTTCGAAAAACCATCCCGTTTGTAGAAGATGA 904 Query 1014 ACTTATATCTGAAAGCAAACTTCTTTAGTTAGTGTAGCCTT 1054 |||||| ||||||||||||||||||||| |||||||||||| Sbjct 905 ACTTATTTCTGAAAGCAAACTTCTTTAGGTAGTGTAGCCTT 945 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43078896210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5