BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11470.2
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928862 jgi|Araly1|928862|scaffold_301319.1 1288 0.0
> Ahg928862 jgi|Araly1|928862|scaffold_301319.1
Length=952
Score = 1288 bits (697), Expect = 0.0
Identities = 862/941 (92%), Gaps = 13/941 (1%)
Strand=Plus/Plus
Query 121 AAGAATTTG-TTGGAGCTGATGAGAATCAGAGTCATGTCTCAATTGCAGCGAAGCTTATC 179
|||| |||| |||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 11 AAGACTTTGTTTGGAGCTGATGAGAATCAGTGTCATTTCGCAATTGCAGCGAAGCTTCTC 70
Query 180 GATCGAATTGCCTTCACTGGTTCCTCTGC-AACTTCCATCTCGGATGGAGACTCATCTAT 238
|| ||||| || ||||| ||| |||| | |||||||||||| ||||||||||||||||
Sbjct 71 AATGGAATTTCCATCACTCGTTTCTCT-CAAACTTCCATCTCCAATGGAGACTCATCTAT 129
Query 239 GGTTTATTCGACCAGATGAAGTGAAGAGTACATCTCTTCTAAAACACTACTCTCAACTTC 298
||| ||||||||||||||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 130 GGTATATTCGACCAGATGAAGTGAAAATTCCATCTCTTTTAAAACACTACTCTCAACTTC 189
Query 299 TGTCACCAACCGAGAAAGAGAAAG-TTCTTCAGATGCGAGGCGATGAGCTTAAGAAGAAT 357
|||||||| | |||| ||| |||| ||| |||| | |||||||||| |||||||||||||
Sbjct 190 TGTCACCATCTGAGATAGATAAAGTTTC-TCAGCTTCGAGGCGATGCGCTTAAGAAGAAT 248
Query 358 GCTTTGCTTGCTCGAACCTTGGTTCGGACCACCATTGCTAGATGT-ATGACAAACAATGA 416
|||||||||||||||||||||||||| ||||||||||| |||| | | |||||||||||
Sbjct 249 GCTTTGCTTGCTCGAACCTTGGTTCGCACCACCATTGCAAGATATCA-GACAAACAATGC 307
Query 417 AGTCGATCCTAAGG-CCTTGATGTTCAAGAAGAATATGTATGGGAAGCCTGAGGTAGATT 475
|||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 308 AGTCGATCCTC-GGTCCTTGATGTTTAAGAAGAATACATATGGGAAGCCTGAGGTAGATT 366
Query 476 GGCAGAATTATACGAACTGTAATAATCCACCATTGCATTTCAACATTTCTCACACAGATT 535
|||||||||||| |||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 367 GGCAGAATTATAAGAACTGTAATAACCCACCATTGCATTTCAATATCTCCCACACAGATT 426
Query 536 CATTAATTGCCTGTGGGGTGACTGTACACGTTCCGGTTGGTATCGATGTTGAAGACAAGG 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 427 CATTAATTGCCTGTGGGGTGACTGTACATGTTCCGGTTGGTATCGATGTTGAAGACAAGG 486
Query 596 AAAGGAAGATTAAACATGATATCTTAGCATTTGCAGAAAGATTTTACTCTGCTGATGAAG 655
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 487 AAAGGAAGATTAAACATGACGTCTTAGCATTTGCAGAAAGATTCTACTCTGCTGATGAAG 546
Query 656 TCAAGTTTTTGTCAACTTTACCGGACCCTGAA-GTTCAGAGAAAGGAATTTATTAAGTTA 714
| ||||||||||||||| |||||||||| ||| || ||| ||||||| ||||||||||||
Sbjct 547 TGAAGTTTTTGTCAACTATACCGGACCCGGAAAGT-CAGCGAAAGGAGTTTATTAAGTTA 605
Query 715 TGGACCCTAAAGGAGGCATATGTGAAAGCATTAGGAAAAGGCTTTTCTGCTGCACCTTTT 774
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 606 TGGACTCTAAAGGAGGCATATGTGAAAGCATTAGGAAAAGGGTTTTCTGCTGCACCTTTT 665
Query 775 AATACCTTCACAATCCAGTCCAAGGTTGGAACAAAAGGAGAATACAATCTTTGCAAGATG 834
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 666 AATACCTTCACAATCCAATCTAAGGCTGGAACAAAAGGAGAATACAATCTTTGCAAGAC- 724
Query 835 A-CTGAAATGACTGCAAGTTCGCTGGAGGAGACAAACAAATGCGATGGAGAATGGAAGTT 893
| ||||||||||| | ||||| |||||| |||||||||| ||| | |||| |||||||||
Sbjct 725 ATCTGAAATGACTACCAGTTCACTGGAGAAGACAAACAATTGCAACGGAGGATGGAAGTT 784
Query 894 TTCCCTTTTGGAGTTGGATGATTCTCATTATGCTGCAATCTGTATTGAAGATGATGAAGC 953
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 785 TTCCCTTTTGGAGTTGGCTGATTCTCATTATGCTGCAATCTGTATTGAAGATGATCAAGC 844
Query 954 TAGTGGAGGAGCTCCTATGAGGGTGATTGTCCGAAAAACCATCCCGTTTGTAGAAGATGA 1013
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 845 TAGTGGAGGAGCTCCTATGAGGGTGATTGTTCGAAAAACCATCCCGTTTGTAGAAGATGA 904
Query 1014 ACTTATATCTGAAAGCAAACTTCTTTAGTTAGTGTAGCCTT 1054
|||||| ||||||||||||||||||||| ||||||||||||
Sbjct 905 ACTTATTTCTGAAAGCAAACTTCTTTAGGTAGTGTAGCCTT 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5