BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11480.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928863 jgi|Araly1|928863|scaffold_301320.1 1738 0.0
Ahg487217 jgi|Araly1|487217|fgenesh2_kg.6__351__AT5G04370.2 686 0.0
> Ahg928863 jgi|Araly1|928863|scaffold_301320.1
Length=1187
Score = 1738 bits (941), Expect = 0.0
Identities = 1090/1163 (94%), Gaps = 5/1163 (0%)
Strand=Plus/Plus
Query 89 AATAAGTACGATAATTGAAATGGATCCAAGATTCATCAACACCATTCCTTCCTTGAGGTA 148
||| ||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2 AATCAGTACGATACTTAAAATGGATCCAAGATTCATCGACACCATTCCTTCCTTGAGTTA 61
Query 149 TGATGATGATAAGTGTGATGATGAATATGCGTTTGTGAAAGCTCTATGTATGAGTGGTGG 208
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 62 TAATGATGATAAGTGTGATGATGAATATGCATTTGTGAAAGCTCTATGTATGAGTGGTGG 121
Query 209 AGATGGTGCCAACAGTTACTCCGCCAATTCTCGCCTTCAGAAAAAAGTTTTATCAATGGC 268
|||||| |||||||||||||| |||||||||| ||||||| |||||||||| |||||||
Sbjct 122 AGATGGAACCAACAGTTACTCCACCAATTCTCGTCTTCAGAGAAAAGTTTTAACAATGGC 181
Query 269 CAAACCAGTCTTGGTAAGAAA-CACAGAAGAAATGATGATGAACTTAGACTTTCCTACGT 327
||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 182 CAAACCAGTCTTGGTAA-AAACCACAGAAGAAATGATGATGAGCTTAGACTTTCCTACGT 240
Query 328 ACATCAAAGTTGCTGAATTGGGTTGTTCTTCGGGACAAAACTCTTTTTTGGCTATCTTTG 387
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct 241 ACATCAAAGTTGCTGAATTGGGTTGTTCTTCGGGACAAAACACGTTTTTGGCTATCTCTG 300
Query 388 AGATCATCAACACCATTAATGTGTTGTGCCAACATGTGAACAAAAACTCACCAGAGATCG 447
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |
Sbjct 301 AGATCATCAACACCATTAGTGTGTTGTGCCAACATGTGAACAAAAACCCACCAGAAATAG 360
Query 448 ATTGTTGTCTAAACGATCTCCCGGAAAATGATTTCAACACGACCTTTAAGTTCGTACCTT 507
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 361 ATTGTTGTCTGAACGATCTCCCGGAAAACGATTTCAACACGACCTTCAAGTTCGTACCAT 420
Query 508 TCTTCAACAAGGAGCTCATGATCACAAACAAATCATCATGTTTCGTCTATGGAGCTCCAG 567
||||||||||||||||||||||||||| |||| |||| || |||||||||||||||||||
Sbjct 421 TCTTCAACAAGGAGCTCATGATCACAAGCAAAGCATCGTGCTTCGTCTATGGAGCTCCAG 480
Query 568 GTTCCTTCTATTCCAGGCTCTTCTCTCGCAATAGCCTCCATTTAATACATTCCTCTTATG 627
|||||||||||||||| |||||||| ||||||||||||||| | ||||||||||| ||||
Sbjct 481 GTTCCTTCTATTCCAGACTCTTCTCCCGCAATAGCCTCCATATCATACATTCCTCGTATG 540
Query 628 CACTCCATTGGCTCTCTAAGGTTCCCGAGAAACTTGAGAATAATAAGGGGAATCTGTACA 687
| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 541 CCCTCCATTGGCTCTCTAAGGTTCCCGAAAAACTTGAGAATAATAAGGGGAATGTGTACA 600
Query 688 TAACAAGTTCAAGTCCTCAAAGTGCATACAAGGCCTACTTGAATCAATTCCAAAAAGACT 747
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 601 TAACAAGTTCAAGTCCTCAAAGTGCATACAAAGCTTACTTGAATCAATTCCAAAAAGATT 660
Query 748 TCACCATGTTTCTAAGGTTACGTTCTGAAGAAATTGTCTCTAATGGACGTATGGTTCTCA 807
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTCCATGTTTCTAAGGTTACGTTCTGAAGAAATTGTCTCTAATGGACGTATGGTTCTCA 720
Query 808 CCTTCATCGGAAGAAACACTCTTAACGATCCATTGTATAGAGATTGTTGTCACTTTTGGA 867
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTTCATCGGGAGAAACACTCTGAACGATCCATTGTATAGAGATTGTTGTCACTTTTGGA 780
Query 868 CATTGCTATCAAACTCTCTCCGTGACCTAGTCTTTGAGGGTCTTGTGAGTGAGTCAAAGC 927
||||||||||||| |||||||| |||||| |||| ||||||||||||||||| |||||||
Sbjct 781 CATTGCTATCAAAATCTCTCCGCGACCTACTCTTCGAGGGTCTTGTGAGTGAATCAAAGC 840
Query 928 TGGACGCATTCAACATGCCGTTTTATGATCCGAACGTACAAGAACTCAAAGAAGTGATAC 987
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TGGATGCATTCAACATGCCGTTTTATGATCCGAACGTACAAGAACTCAAACAAGTGATAC 900
Query 988 AAAAAGAGGGCTCTTTTGAAATCAATGAATTGGAGTCACATGGATTTGATCTTGGTCAC- 1046
||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 901 GAAACGAGGGCTCTTTTGAAATCAATGAATTGGAGACGCATGGATTCGATCTTGGTCATA 960
Query 1047 -TA-CTACGAAGAAGATGACTTTGAAGCAGGACGCAATGAAGCTAATGGCATAAGAGCTG 1104
|| ||||||||||||||||| ||||||||||| | ||||||| ||| | ||||||||||
Sbjct 961 GTAACTACGAAGAAGATGACTATGAAGCAGGACACGATGAAGCCAATTGTATAAGAGCTG 1020
Query 1105 TTAGTGAACCAATGCTCATTGCTCATTTTGGAGAAGAAATTATCGATACCTTGTTCGATA 1164
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 TTAGTGAACCAATGCTCGTTGCTCATTTTGGAGAAGACATTATCGATACCTTGTTCGATA 1080
Query 1165 AGTATGCATACCATGTGACTCAACATGCCAACTGCAGGAACAAAACGACTGTCAGTCTTG 1224
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGTATGCACACCATGTGACTCAGCATGCCAACTGCAGGAACAAAACGACTGTCAGTCTTG 1140
Query 1225 TCGTTTCCTTGACTAAGAAGTAA 1247
||||||| ||||||||||| |||
Sbjct 1141 TCGTTTCGTTGACTAAGAAATAA 1163
> Ahg487217 jgi|Araly1|487217|fgenesh2_kg.6__351__AT5G04370.2
Length=1379
Score = 686 bits (371), Expect = 0.0
Identities = 848/1076 (79%), Gaps = 41/1076 (4%)
Strand=Plus/Plus
Query 190 CTCTATGTATGAGTGGTGGAGATGG-TGCCAACAGTTACTCCGCCAATTCTCGCCTTCAG 248
|||||||||||||||| |||||||| | ||||||||||||| ||||||||| ||||||
Sbjct 294 CTCTATGTATGAGTGGAGGAGATGGAT-ACAACAGTTACTCCACCAATTCTCTTCTTCAG 352
Query 249 AAAAAAGTTTTATCAATGGCCAAACCAGTCTTGG-TAAGAAACACAGAA-GAAATGATGA 306
| || ||| ||||||| ||| ||||| || |||| |||| |||||| || ||| ||||||
Sbjct 353 AGAAGAGTGTTATCAAAGGCTAAACCGGTATTGGTTAAG-AACACA-AAGGAACTGATGA 410
Query 307 TGAACTTAGACTTTCCTACGTACATCAAAGTTGCTGAATTGGGTTGTTCTTCGGGACAAA 366
| |||||| |||||||||| ||||| ||||| ||||| ||||||||||| || |||||||
Sbjct 411 TAAACTTAAACTTTCCTACATACATTAAAGTAGCTGATTTGGGTTGTTCATCTGGACAAA 470
Query 367 ACTCTTTTTTGGCTATCTTTGAGATCATCAACACCA-TTAATGTGTTGTGCCAACATG-T 424
|| | || ||||| || | ||| || ||||| | || | |||||||| || ||||| |
Sbjct 471 ACACATTCTTGGCGATGTCTGAAATTATCAATA-CAGTCAATGTGTTATGTCAACA-GAG 528
Query 425 GAACAAAAACTCACCAGAGATCGATTGTTGTCTAAACGATCTCCCGGAA-AATGATTTCA 483
|||| ||||| ||||||| || |||||||||||||| |||||||| || || ||||| |
Sbjct 529 GAACCAAAACCCACCAGAAATAGATTGTTGTCTAAATGATCTCCC-TAATAACGATTTTA 587
Query 484 ACACGACCTTTAAGTTCGTACCTTTCTTCAACAAGGAGCTCATGATCACAAACAAATCAT 543
|||| || || || ||| ||| ||||||||| || || | ||||| | |||| ||
Sbjct 588 ACACAACGTTCAAATTCATACAATTCTTCAACGAGAAG---AACATCACGAGCAAAGAAT 644
Query 544 CAT-GTTTCGTCTATGGAGCT-CCAGGTTCCTTCTATTCCAGGCTCTTCTCTCGCAATAG 601
||| ||| |||| ||||| | || ||||| ||||| || ||||||||| |||| | ||
Sbjct 645 CATACTTT-GTCTCTGGAG-TCCCCGGTTCTTTCTACTCGAGGCTCTTCCCTCGGAGGAG 702
Query 602 CCTCCATTTAATACATTCCTCTTATGCACTCCATTGGCTCTCTAAGGTTCCCG-AGAAAC 660
|| ||||| ||||||||||||||| ||||||||||||||||||||||| | || |
Sbjct 703 TCTTCATTTCGTACATTCCTCTTATGGTCTCCATTGGCTCTCTAAGGTTCCTGAAG-GGC 761
Query 661 TTGAGAATAATAAGGGGAATCTGTACATAACAAGTTCAAGTCCTCAAAGTGCATACAAGG 720
|| |||| | |||| || | ||||||| |||| ||||||||||| |||| |||| ||||
Sbjct 762 TTAAGAAGAGTAAGATGAGTGTGTACATCACAAATTCAAGTCCTCTAAGTACATATAAGG 821
Query 721 CCTACTTGAATCAATTCCAAAAAGACTTCACCATGTTTC-TAAGGTTACGTTCTGAAGAA 779
| ||||| ||||||||||||| ||| ||| | | |||| ||| | |||||||||||
Sbjct 822 CTTACTTAAATCAATTCCAAACAGATTTCGCGACATTTCTTAA-ACTGCGTTCTGAAGAG 880
Query 780 ATTGTCTCTAATGGACGTATGGTTCTCACCTTCATCGGAAGAAACACTCTTAACGATCCA 839
|| || ||||||||||| ||||||||||| ||||| || |||||||| || | |||||
Sbjct 881 ATGGTTTCTAATGGACGCATGGTTCTCACTTTCATTGGTCGAAACACTATTGATAATCCA 940
Query 840 TTGTATAGAGATTGTTGTCACTTTTGGACATTGCTATCAA-ACTCTCTCCGTGACCTAGT 898
||| |||||||||||||||||||||||||||| |||| | | |||||||||||||||||
Sbjct 941 TTGCATAGAGATTGTTGTCACTTTTGGACATTATTATCCAGA-TCTCTCCGTGACCTAGT 999
Query 899 CTTTGAGGGTCTTGTGAGTG-AGTCAAAGCTGGACGCATTCAACATGCCGTTTTATGATC 957
| | ||||||||||||||| | || ||| | || | ||| |||| || |||||||| |
Sbjct 1000 CGTCGAGGGTCTTGTGAGTCCA-TCGAAGGTAGATTCGTTCTACATTCCATTTTATGACC 1058
Query 958 CGAACGTACAAGAACTCAAAGAAG-TGATACAAAAAGAGGGCTCTTTTGAAATCAATGAA 1016
| |||| | ||||| | |||| || || |||| ||||| || || ||||||||||| ||
Sbjct 1059 CCAACGAAAAAGAAGT-AAAGGAGGTGGTACAGAAAGAAGGTTCCTTTGAAATCAAAGAC 1117
Query 1017 TTGGAGTCACATGGATTTGATCTTGGTCACTACTA-CGAAGAAGA-TGACTTTGAAG--- 1071
|||||| ||||||||| ||| ||||| || | || | |||| || | | ||||
Sbjct 1118 TTGGAGACACATGGATATGACCTTGGCCATTG-TAACCAAGACGAGTCAAAGAGAAGTAA 1176
Query 1072 --CAGG-ACGCAATGAAGCTAATGGCATAAGAGCTGTTAGTGAACCAATGCTCATTGCTC 1128
|||| | |||||||| ||| ||| ||||| || ||||||||| ||||| | ||||
Sbjct 1177 ATCAGGGAAA-AATGAAGCCAATTACATCAGAGCGGTGAGTGAACCACTGCTCGTAGCTC 1235
Query 1129 ATTTTGGAGAAGAAATTATCGATACCTTGTTCGATAAGTATGCATACCATGTGACTCAAC 1188
| |||||||| | || | | | | ||||| | |||| ||||| |||||| ||||||
Sbjct 1236 ACTTTGGAGATGCCATCACCAACATATTGTTTAACAAGTTTGCATGTCATGTGTCTCAAC 1295
Query 1189 ATGCCAACTGCAGGAACAAAACGACTGTCAGTCTT-GTCGTTTCCTTGACTAAGAA 1243
|||| | ||||||||||||||||| ||||| | | |||||||| |||||||||||
Sbjct 1296 ATGCTAGTTGCAGGAACAAAACGACCGTCAG-CATAGTCGTTTCATTGACTAAGAA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5