BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11490.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317933 jgi|Araly1|317933|fgenesh1_pm.C_scaffold_3000949 2074 0.0
> Ahg317933 jgi|Araly1|317933|fgenesh1_pm.C_scaffold_3000949
Length=1317
Score = 2074 bits (1123), Expect = 0.0
Identities = 1262/1325 (95%), Gaps = 25/1325 (2%)
Strand=Plus/Plus
Query 1 ATGGCTAAAGTTCTAAAATCGAGCCAATCATGTCATTTCCCTTCACCTTCAAG------- 53
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAAAGTTCTTAAATCGAGCCAATCATGTCATTTCCCTTCACCTTCAAGCTCTTCT 60
Query 54 -C-TCTTCTTCTACATCATGTGGAGGAGGCAATGATGGTAGTAATAGAGACCCACATTCT 111
| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 61 TCTTCTTCTTCTACATCATGT---GGAGGCAATGATGGTGGTAATAGAGACCCACATTCT 117
Query 112 CCTTTTAACATTTCTCGTCGTgaggaagaggaagaagaggaagagagaagcgagaaagag 171
|||||||||||||||||||| |||| | | ||||||||||| ||||||||||||||||||
Sbjct 118 CCTTTTAACATTTCTCGTCGCGAGG-A-A-GAAGAAGAGGAGGAGAGAAGCGAGAAAGAG 174
Query 172 agagaaagaTTCGAGCTTTCATCTGCATTGGAGATTCTT-GTTTCTGCTATTAGAAGGTC 230
|| ||||||||||||||||| || |||||||||||| || ||||||||||||||||||||
Sbjct 175 AGGGAAAGATTCGAGCTTTCTTCGGCATTGGAGATT-TTAGTTTCTGCTATTAGAAGGTC 233
Query 231 TGTGATTGGTGGGTGTGTTGGTGAAGAGGATCTTTGTTCAATGGAGATTGGTGTTCCTAC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 234 TGTGATTGGTGGGTGTGTTGGTGAAGAGGATCTTTGTTCAATGGAGATTGGTGTTCCCAC 293
Query 291 AGATGTTAGACATGTCGCTCATGTTACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCC 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 294 AGATGTTAGACATGTCGCTCATGTCACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCC 353
Query 351 TGTTGAGTTTGAACCTGAAGTCCCTAGACGAGCTCCTAGTGCAAGTGCAACCGTGTTTGG 410
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 354 TGTTGAGTTTGAACCTGAAGTCCCAAGACGAGCTCCTAGTGCAAGTGCTACCGTGTTTGG 413
Query 411 AGTCTCTACTGAATCAATGCAGCTATCTTATGATACTAGAGGGAACATCGTGCCTACGAT 470
||||||||| || |||||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 414 AGTCTCTACCGAGTCAATGCAGCTATCATATGATACTAGAGGGAACGTCGTGCCTACTAT 473
Query 471 ACTTTTGATGATGCAGAGTCACTTGTACAGTAGAGGCGGATTGCGGGTAGAGGGAATTTT 530
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 ACTTTTGATGATGCAGAGTCACTTGTACAGTAGAGGCGGATTGCGGGTAGAAGGAATTTT 533
Query 531 CAGGATTAATGGTGAGAATGGTCAAGAAGAGTACATAAGAGAAGAGTTGAATAAAGGTAT 590
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 534 CAGGATTAATGGTGAGAATGCTCAAGAAGAGTACATAAGGGAAGAGTTGAATAAAGGTAT 593
Query 591 TATACCTGATAACATTGATGTCCACTGCTTAGCAAGTCTCATTAAGGCTTGGTTTAGGGA 650
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TATACCTGATAACATCGATGTCCACTGCTTAGCAAGTCTCATTAAGGCTTGGTTTAGGGA 653
Query 651 ACTTCCTAGTGGCGTTTTGGATTCACTTTCACCAGAGCAAGTAATGGAGTCTGAGAGTGA 710
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 654 ACTTCCTAGTGGCGTTTTGGATTCACTTTCACCAGAACAAGTAATGGAGTCTGAGAGTGA 713
Query 711 AGATGAGTGTGTGGAGCTTGTAAGGCTTCTTCCTTCAACAGAAGCTTCTTTGTTAGATTG 770
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 714 AGATGAGTGTGTGGAACTTGTAAGGCTTCTCCCTTCAACAGAAGCGTCTTTGTTAGATTG 773
Query 771 GGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCG 833
Query 831 AAACATTGCAATGGTTTTTGCACCTAACATGACTCAGATGTTGGATCCATTGACGGCTCT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAACATTGCAATGGTTTTTGCACCTAACATGACTCAGATGTTGGATCCATTGACGGCTCT 893
Query 891 AATGTATGCTGTGCAAGTTATGAACTTTCTGAAAACACTTATTGTGAAGACGCTTAAAGA 950
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 AATGTATGCTGTGCAAGTTATGAACTTTCTTAAAACACTTATTGTGAAGACGCTTAAAGA 953
Query 951 CCGAAAAGAATCTAGAGATAAGTTGGTTCCAGCCTCAAATCCAAGTCCTCGGGACCATAA 1010
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 CCGAAAAGAATCTCGAGATAAGTTGGTTCCAGCCTCAAATCCGAGTCCTCGGGACCATAA 1013
Query 1011 TGGTGATCAGAGCAGCAGTAGACAGTTGTTACATCTCATGAAAGCTAACAAGGAGGAAAC 1070
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 TGGTGATCAGAGCAGCAGTAGACAGTTGTTGCATCTCATGAAAGCTAACAAGGAGGAAAG 1073
Query 1071 TTTAGACAACTTTGAGGCGGAGATGAAAGACAAAGAAGAGTCTGCAGATGAAGAAGAAGA 1130
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTTAGACAACTATGAGGCGGAGATGAAAGACAAAGAAGAGTCTGCAGATGAAGAAGAAGA 1133
Query 1131 AGAA------TGTGCCGAATCT-GTAGAACTTGTTGACATAAAAAAGTCTTCTCTGGTTA 1183
|||| ||||| |||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1134 AGAAGAAGAATGTGCGGAATCTCG-AGAACTTGTTGACATAAAAAATTCTTCTCTGGTTA 1192
Query 1184 ATAACAGCAGTGGAGGTTTTGGACAGAAACACATTGGTTGGGAGGAGCAGAGAACCATGT 1243
| | || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1193 ACAGCAACAATGGAGGTTTTGGACAGAAACACAATGGTTGGGAGGAGCAGAGAACCATGT 1252
Query 1244 CGAAAGCGAGTAGTATTGTGGGACGTGTGAATTACAGAGTTGAGCTATTCGAAGCTTGGC 1303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1253 CGAAAGCGAGTAGTATTGTGGGACGTGTGAACTACAGAGTTGAGCTATTCGAAGCTTGGC 1312
Query 1304 GATGA 1308
|||||
Sbjct 1313 GATGA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5