BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11500.1

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478489 jgi|Araly1|478489|fgenesh2_kg.3__1190__AT3G11500.1         695    0.0  


> Ahg478489 jgi|Araly1|478489|fgenesh2_kg.3__1190__AT3G11500.1
Length=436

 Score =  695 bits (376),  Expect = 0.0
 Identities = 418/438 (95%), Gaps = 3/438 (1%)
 Strand=Plus/Plus

Query  54   CTGGAATCAATCGAGTAAAGTGTTCGTAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCGT  113
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  1    CTGGAATCAATCGAGTAAAGTGTTCATAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCTT  60

Query  114  CTTCTCCGATTCTGCAAGTATGAGTCGATCAGGTCAGCCTCCAGATCTCAAGAAGTACAT  173
            |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  61   CTTCTCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACAT  120

Query  174  GGACAAGAAACTCCAAATTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGG  233
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  121  GGACAAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGG  180

Query  234  CTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA  293
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA  240

Query  294  AACTGACATTGGGATGGTGGTGATAAGAGGAAACAGCATTGTTACTGTTGAAGCTCTCGA  353
            ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct  241  AACTGACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGA  300

Query  354  ACCAGTTGGAAGATCTTAGCTTATGACTTTTCACCCCCAAGTAATCATCTTCTGTAATAT  413
            |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||
Sbjct  301  ACCAGTTGGAAGATCTTAGCTTATGACTTAGCACCCTCAAGTAATCATCTTCTGTAATAT  360

Query  414  GAGACTTTGACTTACTTTGCTCTCTGTACCGGCATGAATCAATCTTGA-TTTTATTTGAT  472
             ||  ||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct  361  TAG--TTTGACTTAGTTTGCTTTCTGTACCGGCATGAATCGATCTTGAGTTTTATTTGAT  418

Query  473  GAATTCCTCTTCTTTGGC  490
            ||| ||||||||||||||
Sbjct  419  GAAATCCTCTTCTTTGGC  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21557907785


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5