BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11500.1 Length=589 Score E Sequences producing significant alignments: (Bits) Value Ahg478489 jgi|Araly1|478489|fgenesh2_kg.3__1190__AT3G11500.1 695 0.0 > Ahg478489 jgi|Araly1|478489|fgenesh2_kg.3__1190__AT3G11500.1 Length=436 Score = 695 bits (376), Expect = 0.0 Identities = 418/438 (95%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 54 CTGGAATCAATCGAGTAAAGTGTTCGTAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCGT 113 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1 CTGGAATCAATCGAGTAAAGTGTTCATAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCTT 60 Query 114 CTTCTCCGATTCTGCAAGTATGAGTCGATCAGGTCAGCCTCCAGATCTCAAGAAGTACAT 173 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 61 CTTCTCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACAT 120 Query 174 GGACAAGAAACTCCAAATTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGG 233 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 GGACAAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGG 180 Query 234 CTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA 293 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA 240 Query 294 AACTGACATTGGGATGGTGGTGATAAGAGGAAACAGCATTGTTACTGTTGAAGCTCTCGA 353 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 241 AACTGACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGA 300 Query 354 ACCAGTTGGAAGATCTTAGCTTATGACTTTTCACCCCCAAGTAATCATCTTCTGTAATAT 413 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 301 ACCAGTTGGAAGATCTTAGCTTATGACTTAGCACCCTCAAGTAATCATCTTCTGTAATAT 360 Query 414 GAGACTTTGACTTACTTTGCTCTCTGTACCGGCATGAATCAATCTTGA-TTTTATTTGAT 472 || ||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||| Sbjct 361 TAG--TTTGACTTAGTTTGCTTTCTGTACCGGCATGAATCGATCTTGAGTTTTATTTGAT 418 Query 473 GAATTCCTCTTCTTTGGC 490 ||| |||||||||||||| Sbjct 419 GAAATCCTCTTCTTTGGC 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21557907785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5