BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11510.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478490 jgi|Araly1|478490|fgenesh2_kg.3__1191__AT3G11510.1 974 0.0
Ahg325233 jgi|Araly1|325233|fgenesh1_pm.C_scaffold_6000453 357 7e-98
> Ahg478490 jgi|Araly1|478490|fgenesh2_kg.3__1191__AT3G11510.1
Length=656
Score = 974 bits (527), Expect = 0.0
Identities = 617/660 (93%), Gaps = 7/660 (1%)
Strand=Plus/Plus
Query 8 CTTGTTTACACTGAGCAGAATCTAAAAACACTTATCGTTTCGTCTCTTCTCTGATCCATT 67
||||||| |||||||||| ||| |||||||| ||||| ||| ||||||||||||||||||
Sbjct 1 CTTGTTTCCACTGAGCAGCATCCAAAAACAC-TATCGCTTCTTCTCTTCTCTGATCCATT 59
Query 68 GTTGAAGATGTCGAAGAGAAAAACTAAGGAGCCAAAGGTTGAGACTGTGACTCTTGGACC 127
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 60 GTTGAAGATGTCGAAGAGAAAGACTAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACC 119
Query 128 TTCTGTTCGTGAAGGAGAGCAAGTTTTTGGTGTTGTTCACATCTTTGCATCTTTCAATGA 187
| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 120 TACTGTTCGTGAAGGAGAGCAAGTTTTCGGTGTTGTTCACATCTTTGCTTCTTTCAATGA 179
Query 188 CACTTTCATTCATGTGACTGATCTCTCCGGTAGAGAAACTCTCGTCCGCATCACCGGTGG 247
||||||||||| ||||||||||| || || |||||||||||||| || |||||||||||
Sbjct 180 TACTTTCATTCACGTGACTGATCTGTCTGGCAGAGAAACTCTCGTTCGTATCACCGGTGG 239
Query 248 CATGAAGGTGAAGGCTGACCGTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCTCA 307
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CATGAAGGTGAAGGCTGATCGTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCACA 299
Query 308 AGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCATGCACGTGAAGCTCCGTGC 367
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 AGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACAGCCATTCACGTGAAGCTCCGTGC 359
Query 368 TACTGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTTAGAGCCCT 427
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 TACTGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTCAGAGCCCT 419
Query 428 TGCTCGTTCTGGCATGAAGATTGGTCGTATTGAGGATGTGACTCCGATTCCCACAGACAG 487
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 420 TGCTCGTTCTGGCATGAAGATTGGTCGTATAGAGGATGTGACCCCGATTCCCACAGACAG 479
Query 488 TACACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTCTGATTGCACGATGAGGCTCATCA 547
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TACACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTGTGATTGCACGATGAGGCTCATCA 539
Query 548 TCGTTGCAA-TGTGCTCTTGAG-AC-TGTGGGTATTTTCTTGGGTACACTTCGAAGTTAG 604
|||| ||| ||| | ||||| || | || ||||||||||||||||||||||||||||
Sbjct 540 TCGTC-CAAATGTCCCCTTGAATACCTATG--TATTTTCTTGGGTACACTTCGAAGTTAG 596
Query 605 TTTTGTCTCTCTCCAATTTATCTTTCCAGTTGCTTTGAGAACATTATAAGCTGTGttttt 664
||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 597 TTTTGTCTCTCTCCAATTTATCTTTTGAGTTGCTTCAAGAATATTATAAGCTGTGTTTTT 656
> Ahg325233 jgi|Araly1|325233|fgenesh1_pm.C_scaffold_6000453
Length=375
Score = 357 bits (193), Expect = 7e-98
Identities = 268/302 (89%), Gaps = 14/302 (5%)
Strand=Plus/Plus
Query 113 TGTGACTCTTGGACCTTCTGTTCGTGAAGGAGAGCAAGTTTTTGGTGTTGTTCACATCTT 172
||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2 TGTCACTCTTGGACCATCTGTTCTTGAGGGAGAGCAAGTTTTTGGTGTTGTTCACATCTT 61
Query 173 TGCATCTTTCAATGACACTTTCA----TTCATGTGACTGATCTCTCCGGTAGAGAAACTC 228
|||||| |||||||||||||||| |||| ||||||||||| || || ||||||||||
Sbjct 62 TGCATCATTCAATGACACTTTCATTTCTTCACGTGACTGATCTGTCTGGCAGAGAAACTC 121
Query 229 TCGTCCGCATCACCGGTGGCATGAAGGTGAAGGCTGACCGTGATGAGTCCTCTCCTTATG 288
|||| || |||| | | | | || |||||||| ||||||||||| ||||||||||
Sbjct 122 TCGTTCGTATCA-C--T-G--T---TGTAAAGGCTGATCGTGATGAGTCTTCTCCTTATG 172
Query 289 CTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCA 232
Query 349 TGCACGTGAAGCTCCGTGCTACTGGAGGAAACAAAACCAAGACTCC-AGGTCCTGGTGCT 407
|||| |||||||||||||| || || |||||||| ||||||||||| |||||||||||||
Sbjct 233 TGCATGTGAAGCTCCGTGCCACCGGTGGAAACAAGACCAAGACTCCCAGGTCCTGGTGCT 292
Query 408 CA 409
||
Sbjct 293 CA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5