BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11520.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg478491 jgi|Araly1|478491|fgenesh2_kg.3__1192__AT3G11520.1 1855 0.0 > Ahg478491 jgi|Araly1|478491|fgenesh2_kg.3__1192__AT3G11520.1 Length=1418 Score = 1855 bits (1004), Expect = 0.0 Identities = 1215/1315 (92%), Gaps = 21/1315 (2%) Strand=Plus/Plus Query 211 ATCGTCGTGCTCTTGGCGACATTGGAAACGTCGATTCTCTTATTGGAGTCGAAGGAGGAA 270 |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| Sbjct 120 ATCGTCGTGCTCTTGGAGACATTGGAAACATCGATTCTCTTCTTGGAGTCGAAGGAGGAA 179 Query 271 AGCTTAACCGCCCCATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 330 || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AGATTAATCGCCCAATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 239 Query 331 CAGCCGCCGCTAACAAAAAGGCTCCGATTCTTGATGGAGTTACTAAGAAACAAGAAGTTG 390 |||||||||||||||| |||| ||| ||||||||||||| ||| |||||||||||||||| Sbjct 240 CAGCCGCCGCTAACAATAAGGATCCAATTCTTGATGGAGCTACCAAGAAACAAGAAGTTG 299 Query 391 TAAGAGCGGTTCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCGTCAAAACCAATCGAAG 450 ||||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 300 TAAGAGCGGATCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCATCAAAACCTATTGAAG 359 Query 451 TGATTGTGATAAGTCCTGATACAAACGAGGTTGCTAAAGCTAAAGAGAACAAGAAG---A 507 |||||||||||||||||||||| ||||||||||| |||||||||||||| | | | Sbjct 360 TGATTGTGATAAGTCCTGATACGAACGAGGTTGCAAAAGCTAAAGAGAATGTGTCGTCTA 419 Query 508 A-AGTGACATACTCTTCGGTTCTTGATGCTCGAAGCAAGGCTGCTTCTAAGACTTTGGAT 566 | | || ||||||||| |||||||||||| | ||||||||||||||||||||| Sbjct 420 ATA-AGA-ATACTCTTCTGTTCTTGATGCT-----C---GCTGCTTCTAAGACTTTGGAT 469 Query 567 ATTGATTATGTCGACAAAGAAAATGATCTTGCTGCTGTGGAATACGTTGAGGATATGTAC 626 || |||||||| |||||||| ||||| ||||||||||||||||| || |||||||||||| Sbjct 470 ATCGATTATGTGGACAAAGATAATGAACTTGCTGCTGTGGAATATGTAGAGGATATGTAC 529 Query 627 ATTTTCTACAAAGAAGTTGTGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 686 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 530 ACTTTCTACAAAGAAGTTGAGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 589 Query 687 GAGATTGATGAGAAGATGAGATCAATCCTTATTGATTGGCTTGTAGAAGTTCATGTCAAG 746 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 590 GAGATTAATGAGAAGATGAGATCAATCCTTATAGATTGGCTTGTAGAAGTTCATGTCAAG 649 Query 747 TTTGATCTCTCCCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTTCTTTCT 806 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 650 TTTGATCTCTCTCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTCCTATCT 709 Query 807 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTATAGCT 866 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 710 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTACAGCT 769 Query 867 TCGAAGTACGAAGAAATCTGGCCTCCTCAGGTCAATGATTTGGTATATGTGACTGATAAC 926 ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 770 TCGAAATACGAAGAAATTTGGCCTCCTCAGGTCAATGACTTGGTATATGTGACAGATAAC 829 Query 927 TCCTACAACAGCAGACAGATTCTAGTGATGGAGAAAACCATTTTGGGGAATCTTGAATGG 986 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 830 TCCTACAACAGCAAACAGATTCTAGTGATGGAGAAAACCATTTTGGGAAATCTTGAATGG 889 Query 987 TACTTGACAGTTCCAACACAGTATGTGTTCCTTGTGAGGTTTATTAAAGCCTCGGGTTCT 1046 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 890 TACTTGACAGTTCCAACACAGTATGTGTTTCTTGTGAGGTTCATTAAAGCCTCGGGTTCT 949 Query 1047 GACCAGAAACTGGAGAACTTGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCATCACGAC 1106 |||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 950 GACCCGAAAGTGGAGAACATGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCACCACGAC 1009 Query 1107 AGTTTAATGTTCTGTCCTTCCATGCTTG-CTGCATCAGCGGTCTACACAGCAAGGTGTTG 1165 ||||| |||||||||||||||||| ||| |||||||||| || |||||||| || ||||| Sbjct 1010 AGTTTGATGTTCTGTCCTTCCATG-TTGGCTGCATCAGCAGTATACACAGCCAGATGTTG 1068 Query 1166 CTTGAACAAGACTCCTACTTGGACTGATACACTGAAATTCCACACAGGCTACTCCGAATC 1225 ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1069 CTTGAACAAGAGTCCTACTTGGACTGATACACTGAAATTCCACACCGGCTATTCCGAATC 1128 Query 1226 TCAGCTCATGGATTGCTCAAAGCTTTTAGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1285 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1129 TCAGCTCATGGATTGCTCAAAGCTTTTGGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1188 Query 1286 GCTACGTGGTGTGTTGAAGAAGTATTCGAAACTTGGAAGAGGTGCTGTTGCTCTGATTTC 1345 |||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1189 GCTACGCGGTGTGTTTAAGAAGTATTCGAAACTGGGAAGAGGTGCTGTTGCTTTGATTTC 1248 Query 1346 ACCAGCCAAGTCTCTTATGTCATCTGCTCCATGAACAAGGCTTGAAAGATGGCTCTCTTG 1405 ||||||||||| |||| |||| ||||||||||||||||||||||| ||| | | | ||| Sbjct 1249 ACCAGCCAAGTGTCTTTTGTCGTCTGCTCCATGAACAAGGCTTGAGAGAAGT-TGTATTG 1307 Query 1406 CAAACTCTGCATTTTAGATTCTCTATCTTTTATCGTTTTATATGTAAAGGTATTGGTTCT 1465 |||||||||||| |||| | | ||| | ||| |||||||||||||||| |||||||| Sbjct 1308 CAAACTCTGCATCTTAG-TAGA-T-TCTAT-ATCTTTTTATATGTAAAGGTTTTGGTTCT 1363 Query 1466 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAATTCTTCT 1520 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1364 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAACTCTTCT 1418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5