BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11520.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478491 jgi|Araly1|478491|fgenesh2_kg.3__1192__AT3G11520.1 1855 0.0
> Ahg478491 jgi|Araly1|478491|fgenesh2_kg.3__1192__AT3G11520.1
Length=1418
Score = 1855 bits (1004), Expect = 0.0
Identities = 1215/1315 (92%), Gaps = 21/1315 (2%)
Strand=Plus/Plus
Query 211 ATCGTCGTGCTCTTGGCGACATTGGAAACGTCGATTCTCTTATTGGAGTCGAAGGAGGAA 270
|||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 120 ATCGTCGTGCTCTTGGAGACATTGGAAACATCGATTCTCTTCTTGGAGTCGAAGGAGGAA 179
Query 271 AGCTTAACCGCCCCATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 330
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGATTAATCGCCCAATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 239
Query 331 CAGCCGCCGCTAACAAAAAGGCTCCGATTCTTGATGGAGTTACTAAGAAACAAGAAGTTG 390
|||||||||||||||| |||| ||| ||||||||||||| ||| ||||||||||||||||
Sbjct 240 CAGCCGCCGCTAACAATAAGGATCCAATTCTTGATGGAGCTACCAAGAAACAAGAAGTTG 299
Query 391 TAAGAGCGGTTCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCGTCAAAACCAATCGAAG 450
||||||||| ||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 300 TAAGAGCGGATCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCATCAAAACCTATTGAAG 359
Query 451 TGATTGTGATAAGTCCTGATACAAACGAGGTTGCTAAAGCTAAAGAGAACAAGAAG---A 507
|||||||||||||||||||||| ||||||||||| |||||||||||||| | | |
Sbjct 360 TGATTGTGATAAGTCCTGATACGAACGAGGTTGCAAAAGCTAAAGAGAATGTGTCGTCTA 419
Query 508 A-AGTGACATACTCTTCGGTTCTTGATGCTCGAAGCAAGGCTGCTTCTAAGACTTTGGAT 566
| | || ||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 420 ATA-AGA-ATACTCTTCTGTTCTTGATGCT-----C---GCTGCTTCTAAGACTTTGGAT 469
Query 567 ATTGATTATGTCGACAAAGAAAATGATCTTGCTGCTGTGGAATACGTTGAGGATATGTAC 626
|| |||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 470 ATCGATTATGTGGACAAAGATAATGAACTTGCTGCTGTGGAATATGTAGAGGATATGTAC 529
Query 627 ATTTTCTACAAAGAAGTTGTGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 686
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ACTTTCTACAAAGAAGTTGAGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 589
Query 687 GAGATTGATGAGAAGATGAGATCAATCCTTATTGATTGGCTTGTAGAAGTTCATGTCAAG 746
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 590 GAGATTAATGAGAAGATGAGATCAATCCTTATAGATTGGCTTGTAGAAGTTCATGTCAAG 649
Query 747 TTTGATCTCTCCCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTTCTTTCT 806
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 650 TTTGATCTCTCTCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTCCTATCT 709
Query 807 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTATAGCT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 710 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTACAGCT 769
Query 867 TCGAAGTACGAAGAAATCTGGCCTCCTCAGGTCAATGATTTGGTATATGTGACTGATAAC 926
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 770 TCGAAATACGAAGAAATTTGGCCTCCTCAGGTCAATGACTTGGTATATGTGACAGATAAC 829
Query 927 TCCTACAACAGCAGACAGATTCTAGTGATGGAGAAAACCATTTTGGGGAATCTTGAATGG 986
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 830 TCCTACAACAGCAAACAGATTCTAGTGATGGAGAAAACCATTTTGGGAAATCTTGAATGG 889
Query 987 TACTTGACAGTTCCAACACAGTATGTGTTCCTTGTGAGGTTTATTAAAGCCTCGGGTTCT 1046
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 890 TACTTGACAGTTCCAACACAGTATGTGTTTCTTGTGAGGTTCATTAAAGCCTCGGGTTCT 949
Query 1047 GACCAGAAACTGGAGAACTTGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCATCACGAC 1106
|||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 950 GACCCGAAAGTGGAGAACATGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCACCACGAC 1009
Query 1107 AGTTTAATGTTCTGTCCTTCCATGCTTG-CTGCATCAGCGGTCTACACAGCAAGGTGTTG 1165
||||| |||||||||||||||||| ||| |||||||||| || |||||||| || |||||
Sbjct 1010 AGTTTGATGTTCTGTCCTTCCATG-TTGGCTGCATCAGCAGTATACACAGCCAGATGTTG 1068
Query 1166 CTTGAACAAGACTCCTACTTGGACTGATACACTGAAATTCCACACAGGCTACTCCGAATC 1225
||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1069 CTTGAACAAGAGTCCTACTTGGACTGATACACTGAAATTCCACACCGGCTATTCCGAATC 1128
Query 1226 TCAGCTCATGGATTGCTCAAAGCTTTTAGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1285
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1129 TCAGCTCATGGATTGCTCAAAGCTTTTGGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1188
Query 1286 GCTACGTGGTGTGTTGAAGAAGTATTCGAAACTTGGAAGAGGTGCTGTTGCTCTGATTTC 1345
|||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1189 GCTACGCGGTGTGTTTAAGAAGTATTCGAAACTGGGAAGAGGTGCTGTTGCTTTGATTTC 1248
Query 1346 ACCAGCCAAGTCTCTTATGTCATCTGCTCCATGAACAAGGCTTGAAAGATGGCTCTCTTG 1405
||||||||||| |||| |||| ||||||||||||||||||||||| ||| | | | |||
Sbjct 1249 ACCAGCCAAGTGTCTTTTGTCGTCTGCTCCATGAACAAGGCTTGAGAGAAGT-TGTATTG 1307
Query 1406 CAAACTCTGCATTTTAGATTCTCTATCTTTTATCGTTTTATATGTAAAGGTATTGGTTCT 1465
|||||||||||| |||| | | ||| | ||| |||||||||||||||| ||||||||
Sbjct 1308 CAAACTCTGCATCTTAG-TAGA-T-TCTAT-ATCTTTTTATATGTAAAGGTTTTGGTTCT 1363
Query 1466 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAATTCTTCT 1520
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1364 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAACTCTTCT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5