BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11530.1

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904035 jgi|Araly1|904035|Al_scaffold_0003_1163                    630    3e-180


> Ahg904035 jgi|Araly1|904035|Al_scaffold_0003_1163
Length=381

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 369/382 (97%), Gaps = 3/382 (1%)
 Strand=Plus/Plus

Query  160  ATGGCGATGACCATCGAAG-ACTTGCTGGACTTGCTTTCATGTTTTCATCTAGTATCCTC  218
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGATGACCATCGAAGTACTTGCTGGACTTGCTTTCATGTTTTCATCTAGTATCCTC  60

Query  219  CTACAGATCCTGGCATGCGCGATATATGGTAACTGGTGGCCAATGCTATCAGCACTCATG  278
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   CTACAGATCCTGGCATGTGCGATATATGGTAATTGGTGGCCAATGCTATCAGCACTCATG  120

Query  279  TATGTAGTGGTGCCTATGCCTTGTATGTTCTTTGGAGGAGGCTCAACCCAATTCCTTATT  338
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  121  TATGTAGTGGTGCCTATGCCTTGTATGTTCTTTGGAGGAGGCTCAACTCAATTCCTTACT  180

Query  339  AGTCGGGACGGTGGAGGGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTG  398
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  181  AGTCGGGACGGTGGAGGGTGGATAGATGCAGCTAAGTTCTTGACCGGAGCATCGACCGTG  240

Query  399  GGAAGCCTTGCTATCCCAATCAT-CTTAAGGCACGCACAGATGATCGAGACAGGTGCAAT  457
            |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  241  GGAAGCCTCGCTATCCCAATCATTCT-AAGGCACGCACAGATGATCGAGACAGGTGCAAT  299

Query  458  GCTCATAGAGTTCACATCATTCTTCATATTCATTTGCACTGTCATGTGTTTTCACCGGGC  517
            ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  300  GCTCATAGAATTCACATCGTTCTTCATATTCATTTGCACTGTCATGTGTTTCCACCGGGC  359

Query  518  TAGTCTCGATGATGACTGGTAA  539
            ||||||||||||||||||||||
Sbjct  360  TAGTCTCGATGATGACTGGTAA  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27486623157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5