BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11550.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478496 jgi|Araly1|478496|fgenesh2_kg.3__1197__AT3G11550.1 985 0.0
Ahg892543 jgi|Araly1|892543|Al_scaffold_0006_539 475 2e-133
> Ahg478496 jgi|Araly1|478496|fgenesh2_kg.3__1197__AT3G11550.1
Length=710
Score = 985 bits (533), Expect = 0.0
Identities = 618/659 (94%), Gaps = 5/659 (1%)
Strand=Plus/Plus
Query 65 AAAATGAAGAACGAATCTACCTTCATTGATGTCCCTGCAGAATCCAGCTCAGCCATGAAA 124
|||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1 AAAATGAAAAACGAATCTACCACCATTGATGTCCCTGCAGAATCCAGCTCAGCTATGAAA 60
Query 125 GGCAAAGCTCCTCTAATCGGTGTAGCAAGAGACCACACTACTAGTGGCTCAGGTGGATAC 184
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 61 GGCAAAGCTCCTCTAATCGGTGTGGCTAGAGACCATACCACTAGTGGCTCAGGTGGATAC 120
Query 185 AACAGAGGACTCGCCATCTTTGACTTCCTCCTCCGTTTAGCTGCCATTGTTGCAGCTTTA 244
|||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AACAGAGGTCTCTCCATCTTCGACTTCCTCCTCCGTCTAGCTGCCATTGTTGCAGCTTTA 180
Query 245 GCTGCTGCCGCCACGATGGGAACAAGCGACGAGACTCTTCCCTTCTTCACACAGTTCTTA 304
|| ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GCCGCTGCTGCAACTATGGGAACAAGCGACGAGACTCTTCCATTCTTCACACAGTTCTTA 240
Query 305 CAGTTCGAAGCTAGCTACGACGATCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCC 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGTTCGAAGCTAGCTACGATGATCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCC 300
Query 365 CTTGTAGGAGGATATCTCGTTCTGTCTCTTCCAATCTCCGTCGTCACAATCCTTCGCCCT 424
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTAGTAGGAGGATATCTCGTTCTGTCTCTTCCAATCTCCGTCGTGACAATCCTTCGCCCT 360
Query 425 CTCGCCACCGCCCCAAGACTCCTCTTGCTCGTTCTTGACACTGGGGTCCTGGCGTTGAAC 484
|| ||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||||||
Sbjct 361 CTAGCCACCGCCCCAAGATTACTCTTGCTCGTTCTTGACACTGCGGTTCTGGCTTTGAAC 420
Query 485 ACGGCGGCTGCATCATCGGCGGCAGCAATATCATATCTAGCACACAGTGGTAACCAGAAC 544
|||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 421 ACGGCGGCTGCATCATCGGCAGCAGCAATATCGTATCTAGCGCACAGTGGAAACCAGAAC 480
Query 545 ACGAACTGGCTCCCCATTTGCCAACAGTTTGGAGACTTCTGTCAAAAATCCAGCGGAGCT 604
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 481 ACGAACTGGCTCCCCATTTGCCAACAGTTTGGGGACTTCTGTCAGAAATCCAGTGGAGCT 540
Query 605 GTTGTCTCTGCCTTTGTCTCCGTCGTATTCTTCACCATCCTCGTTGTCATCTCCGGCGTC 664
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTGTCTCTGCCTTTATCTCCGTCGTATTCTTCACCATCCTCGTTGTCATCTCCGGCGTC 600
Query 665 GCTCTGAAAAGACACTAATCAAAA-CCTTATATG--TGTGT--TCATCATTATTGTAAA 718
||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 601 GCTCTAAAAAGACACTAATCAAAAACCTTATATACATGTGTGCTCATCATTATTGTAAA 659
Score = 73.1 bits (39), Expect = 3e-12
Identities = 44/46 (96%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 779 ATCTTTTTAAAAAGGAAAATGAAAGTGTGATTGTAGCTCTGCTTTT 824
||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 666 ATCCTTTT-AAAAGGAAAATGAAAGTGTGATTGTAGCTCTGCTTTT 710
> Ahg892543 jgi|Araly1|892543|Al_scaffold_0006_539
Length=609
Score = 475 bits (257), Expect = 2e-133
Identities = 493/604 (82%), Gaps = 28/604 (5%)
Strand=Plus/Plus
Query 90 TTGATGTCCCTGCAGAATCCAGCTCAGCCATGAAAGGCAAAGCTCCTCTAATCGGTGTAG 149
|||||||||||||||| || ||||||||||| ||||||||||||||||| | ||| |||
Sbjct 23 TTGATGTCCCTGCAGAGTCTAGCTCAGCCATCAAAGGCAAAGCTCCTCTCCTTGGTTTAG 82
Query 150 CAAGAGACCACACTACTAGTGGCTCAGGTGGATACAACAGAGGACTCGCCATCTTT-GAC 208
| ||||| | ||| || | |||||||| || ||||| ||||| || |||| ||| ||
Sbjct 83 CCAGAGA-C-CAC-AC--G-GGCTCAGGGGGTTACAAGAGAGGTCTTTCCAT-TTTCGAT 135
Query 209 TTCCTCCTCCGTTTAGCTGCCATTGTTGCAGCTTTAGCTGCTGCCGCCACGATGGGAACA 268
||||| ||||||||||| |||||||| || || ||||||||||| ||||| ||||| ||
Sbjct 136 TTCCTTCTCCGTTTAGCCGCCATTGTAGCTGCCTTAGCTGCTGCTGCCACAATGGGGACT 195
Query 269 AGCGACGAGACTCTTCCC-TTCTTCACACAGTTCTTACAGTTCGAAGCTAGCTACGACGA 327
|| |||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 196 AGTGACGAGACTC-TCCCTTTCTTCACTCAGTTTTTACAGTTCGAAGCTAGCTACGACGA 254
Query 328 TCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCCCTTGTAGGAGGATATCTCGTTCT 387
||| ||||||||||||||||||||| ||||||| || | || | ||| || || || ||
Sbjct 255 TCTTCCAACTTTCCAGTTCTTTGTGGTTGCCATTGCAATAGTCGCAGGTTACCTTGTCCT 314
Query 388 GTCTCTTCCAATCTCCGTCGTCACAATCCTTCGCCCTCTCGCCACCGCCCCAAGACTCCT 447
||||||||| |||| |||||||| || |||| ||||| ||| || || || |||||
Sbjct 315 GTCTCTTCCCTTCTCAGTCGTCACGATTGTTCGTCCTCTAGCCGTTGCTCCGAGGCTCCT 374
Query 448 CTTGCTCGTTCTTGACACTGGGG-TCCTGGCGT-TGAACACGGCGGCTGCATCAT-CGGC 504
|||||| ||||||||||||| || || |||| | || |||| |||||||| || | ||||
Sbjct 375 CTTGCTTGTTCTTGACACTGCGGCTC-TGGC-TCTGGACACTGCGGCTGCTTC-TGCGGC 431
Query 505 GGCAGCAATA-TCATATCTAGCACACAGTGGTAAC-CAGAACACGAACTGGCTCCCCATT 562
|| || ||| | ||| | ||||||| ||| || | |||||| |||||||| || ||
Sbjct 432 AGCGGCTATAGTG-TATTTGGCACACAATGGGAATAC-GAACACAAACTGGCTTCCAATC 489
Query 563 TGCCAACAGTTTGGAGACTTCTGTCA-AAAATCCAGCGGAGCTGTTGTCTCTGCCTTTGT 621
||||||||||||||||| |||||||| |||| | ||||||||||| |||||||||||||
Sbjct 490 TGCCAACAGTTTGGAGATTTCTGTCAGAAAA-CGAGCGGAGCTGTCGTCTCTGCCTTTGC 548
Query 622 CTCCGTC--GTATTCTTCA-CCATCCTCGTTGTCATCTCCGGCGTCGCTCTGAAAAGACA 678
||| ||| || || || | ||||||| || ||||||||||| ||| |||| ||| |||
Sbjct 549 CTCTGTCACGT-TT-TT-AGCCATCCTTGTCGTCATCTCCGGTGTCTCTCTCAAACGACC 605
Query 679 CTAA 682
||||
Sbjct 606 CTAA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5