BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11560.2
Length=3043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478500 jgi|Araly1|478500|fgenesh2_kg.3__1201__AT3G11560.3 4626 0.0
Ahg487429 jgi|Araly1|487429|fgenesh2_kg.6__563__AT5G06220.1 922 0.0
> Ahg478500 jgi|Araly1|478500|fgenesh2_kg.3__1201__AT3G11560.3
Length=3183
Score = 4626 bits (2505), Expect = 0.0
Identities = 2761/2885 (96%), Gaps = 16/2885 (1%)
Strand=Plus/Plus
Query 70 TTTCTCACCAAACCAAAATCGTGAAAGAATATTTTCCCGCTTCATGTAGATGGCAGCTAG 129
|||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 29 TTTCTCACAAAACTAAAATCGTG-AAGAATAATTTCCCGCTTCATGTAGATGGCAGTTAG 87
Query 130 ACTACAACGACCTGGGCTTGTATCCTCAAGCTCTACTTCAAAACCATGTCTTCCAAGGAT 189
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 88 ACTACAACGACCTGGTCTTGTATCCTCAAGCTCTTCTTCAAAACCATGTCTGCCAAGGAT 147
Query 190 GTCCATTGTTACTTTCATATCCTGCAAAAGGACTGTACACTTGGAGTACTTATCAAATTG 249
||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||
Sbjct 148 GTCCATTGTTACTTTCATATCTTGCAAAAAGACGGTACACTTGGAGTACTTATCTAATTG 207
Query 250 CTTGAGCAATCCGAGGAGCCAATTGTTTGTTAGATATGGTTTTCTGGAAAGGAGC---A- 305
|| ||||||||| ||||||||||||||||| |||||||||||| | ||||||||| |
Sbjct 208 CTGGAGCAATCCCAGGAGCCAATTGTTTGTGAGATATGGTTTTTTCGAAAGGAGCAAAAT 267
Query 306 -------A-CAAGAAGAAATCACAGAGGCTGGTCTTGGCATCTGCTGAAGATGGAGTAGC 357
| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 268 TTGTCTTAGCAAGAAGAAATCACAGAGGCTGGTCTTGGCATCTGCTGAAGATGGAGTGGC 327
Query 358 TATTAATGGAAGTCCTCAGCCAAGATCTAGTAGTAATTTGGAGGACATGAGGACTAGTTT 417
||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 328 TATCAATGGAAGTCCTAAGCCAAGATCTAGTAGTAATTTGGGGGAAATGAGGACTAATTT 387
Query 418 CACCGGATCATTACAAGACGAAAACAATTCTAATGGACTTAACCAGTCTTTGCATGATGC 477
||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 388 CACCGGATCATCACAAGATGAAAACAGCTCTAATGGACTTATCCAGTCTTTGCATGATGC 447
Query 478 TGCTAGATCTATTGAATTGGCTGTTAAAGAGAAGATTACTCCGTCCAGATTTTCGTGGTT 537
||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||
Sbjct 448 TGCTAGATCTATTGAATTGGCAGTTAGAGAGAAGATTACTCCGTCCAGATTTCCATGGTT 507
Query 538 TCCTTCGACTTGGCTTGGTGCTGATAAATATGCATGGGTGAAGACTCTTTCGTATCAGGC 597
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TCCTGCGACCTGGCTTGGTGCTGATAAATATGCATGGGTGAAGACTCTTTCGTATCAGGC 567
Query 598 TTCTCTGTACTCCTTACTGCAAGCAGTAAATGAGATTTCATCTAGAGGCAATTACAGAGA 657
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 568 TTCTCTGTACTCCTTACTACAAGCAGTTAATGAGATTTCATCTAGAGGCAATTACAGAGA 627
Query 658 CGAGGATATTAATGTCTTTGTTCAAAGAAGCTTATCACGCCAAGCTGCTCCCCTTGAGAA 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 628 CGAGGATATTAATGTCTTTGTTCAAAGGAGCTTATCACGCCAAGCTGCTCCCCTTGAGAA 687
Query 718 TATGATGCGAGAGAATCTTTCTTCCAAGCATCCTAAAGCCTATGAATGGTTTTGGTCCGA 777
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 688 TATGATGCGAGAGAATCTATCTTCCAAACATCCTAAAGCCTATGAATGGTTTTGGTCCGA 747
Query 778 GCAAGTTCCTTCCGTGGTGACATCTTTTGTGAATTATCTTGAGGGGGACCAACGTTTTGT 837
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 748 GCAACTTCCTTCCGTGGTGACATCTTTTGTGAATTATATTGAGGGGGACCAACGTTTTGT 807
Query 838 TGCTGCCACTTCTGTCTATGCAAAAGGAAAGTCCGCAGCTGCAAGTAATGAGATTGAAGT 897
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 808 TGCTGCCACTTCTGTCTATGCAAAAGGAAAGTCCGCAGCCGCAAGTAATGAGATTGAGGT 867
Query 898 GTCACTTCTCATGCTTGTACTCAATTGCATTGCAGCAATCACGAAAGTTGGCCCAGCAAA 957
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 868 GTCACTTCTCATGCTTGTGCTCAATTGCATTGCAGCAATCACGAAAGTTGGCCCGGCAAA 927
Query 958 ATTTTCCTGCCCACCCTTCTTCTCTATGATTCCAGATACAACTGGAAGATTGATGGAAAA 1017
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ATTTTCCTGCCCGCCCTTCTTCTCTATGATTCCAGATACAACTGGAAGATTGATGGAAAA 987
Query 1018 ACTTGTAGACTTCGTTCCACTCCCTCAAGCGTATCATTCAATCAAAAGCATAGGCCTACA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ACTTGTAGACTTCGTTCCACTCCCTCAAGCGTATCATTCAATCAAAAGCATAGGCCTACA 1047
Query 1078 AAGAGAATTTCTTACTCATTTTGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT 1137
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AAGAGAGTTTCTTACTCATTTTGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT 1107
Query 1138 TGATACAGATGAAGTTATTTTCTGGGTTGATCTTATACAGAAACAACTGCAGCGGGCTAT 1197
|| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1108 TGCTACAGATGAAGTTGTTTTCTGGATCGATCTTATACAGAAACAACTGCAGCGGGCTAT 1167
Query 1198 AGATAGGGAGAAAATATGGTCAAAGTTAACAACATCCGAAAGTATAGAGGTTTTGGAGAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGATAGGGAGAAAATATGGTCAAAGTTAACAACATCCGAAAGTATAGAGGTTTTGGAGAG 1227
Query 1258 AGATTTAGCAATTTTTGGATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 AGATTTAGCAATTTTTGGATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGC 1287
Query 1318 TGCAAATGGTTTTGATTCTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTTATTGG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGCAAATGGTTTTGATTCTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTTATTGG 1347
Query 1378 AGGCAGCGTCCTGTACTATCCTCAACTTTCAGCCATCAGTTCATACCAGCTGTATGTAGA 1437
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1348 GGGCAGCGTCCTGTACTATCCTCAACTTTCATCCATCAGTTCATACCAGCTGTATGTAGA 1407
Query 1438 GGTTGTTTGCGAAGAACTAGAATGGATTCCTTTCTATCCAAACAATACTGGAACACAGCC 1497
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1408 GGTTGTTTGCGAAGAACTAGAATGGATTCCTTTCTATCCAGACAATACTGGCACACAGCC 1467
Query 1498 ACCAAACCAATCACATGGGCATAAGACCAAACCAGAAGGACCACCCAATTATGAAGTTAT 1557
||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 1468 TCCAAAACAATCACATGGGCATAAGAGCAAAACAGAAGGACCACCTAATTATGAAGTTAT 1527
Query 1558 TCCCCAACTGTTGGATGTTTGTTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATG 1617
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1528 TCCCCAACTGTTGGATGTTTGCTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATG 1587
Query 1618 GCCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCTAAGGGGCACAAGACTTT 1677
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1588 GCCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGGGCACAAAACTTT 1647
Query 1678 GGTTCGGTGTAAAGAAGAACTGGGGATATTAAAGAATGCATCATCAATTGTTAGAGAGTC 1737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GATTCGGTGTAAAGAAGAACTGGGGATATTAAAGAATGCATCATCAATTGTTAGAGAGTC 1707
Query 1738 GAACTCATTTGACAAGGCCCTAGAAAGTGTAGATGAGGCCCTCGTTAGACTGGAAAGCCT 1797
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1708 GAACTCATTTGACAAGGCCCTAGAAAGTGTAGATGAAGCCCTCGTGAGACTGGAAAGCCT 1767
Query 1798 GCTACAGGAGTTGTATGTATCAAACTCATCGTCTGGAAAGGAACAAATAAAAGCCGCGTG 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1768 GCTACAGGAGTTGTATGTATCAAACTCATCGTCTGGAAAGGAACAAATAAAAGCCGCTTG 1827
Query 1858 CTCTGACCTAGAGAAAATACGGAAGCTTAAGAAAGAGGCTGAATTTCTGGAGGCAACTTT 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 CTCTGACCTAGAGAAAATACGGAAGCTTAAGAAAGAGGCTGAATTTCTGGAGGCAACTTT 1887
Query 1918 CAGAGCCAAAGCAGCTTCCTTGCAACAGGGAGGTGACAAAAATGATTCTCAAGAATCCTA 1977
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1888 CAGAGCCAAAGCAGCTTCCTTGCAACAGGGAGGTGACAAAAATGATTCTCAGGAATCCTA 1947
Query 1978 CGAGGTACAAAAACGGTATTTTAAAGGGAAAGACACAAAGAACGCAAATAGTTCTGAGGA 2037
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1948 CGAGGTACAAAAACGGTATTTTAAAGGGAAAGACACAAAAAACGCAATTAGTTCTGAGGA 2007
Query 2038 TCAAGGCAAAAGTATAAGTCGTGGATTCTGGGGATTCTTTGTACGGCCTTCAAGGAAGAA 2097
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2008 TCAAGGCAAAAGTATAAGTCGTGGATTCTGGGGATTCTTTGTACGGCCTCCAAGGAAGAA 2067
Query 2098 GCTTGATCCTGAGTTATCGGGAGATGAATATATTGGGAAATCCAGTGGAAACTTACTTAG 2157
||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 2068 GCTTGATCCTGAGATATCAGGAGGTGAATATATTGGGAAACCCAGTGGAAACTTACTTAG 2127
Query 2158 CATAGACTCGGAACCAATTGAGATCAGCCGATTCGAAATTCTAAGGAACGAGCTAATAGA 2217
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 CATAGACTCAGAACCAAATGAGATCAGCCGATTCGAAATTCTAAGGAACGAGCTAATAGA 2187
Query 2218 ACTCGAAAAGCGGGTCAAAAGAAGCACTGATCAGTCAGTAGATGAGGAGGAATTAATCTC 2277
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 2188 ACTGGAAAAGCGGGTCAAAAGAAGCACTGATCAGTCAGTAGATGAGGAGGAAGTAATATC 2247
Query 2278 TGAGGATACACCTCAATCAAGCAGTAGAACGGAAAGTGTTCAGTTGGTTCAGACTCCCAA 2337
||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2248 TGAGGATACTCCTCAAGCAAGCAGTAGAACGCAAAGTGTTCAGTTGGTTCAGACTCCCAT 2307
Query 2338 GAAGGAAAACATGATGGAGAAAACTCTTCAAAAGCTAAGAGAAGCCACCACGGACGTGTG 2397
|||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 2308 GAAGGAAAACATAATTGAGAAAACTCTTCAAAAGCTAAGAGAAGCCTCCACGGATGTGTG 2367
Query 2398 GCAAGGTACTCAACTTCTTGCCATTGATTCAGCAGCTGCAGTGCAGCTACTTCGGAGGTC 2457
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2368 GCAAGGTACTCAACTTCTTGCCATTGATTCAGCAGCTGCTGTGCAGCTACTTCGGAGATC 2427
Query 2458 TCTGATTGGTGATGAATTAACAGGAAAAGAAAAGAAAGCCCTGCGCAGAACCATGACTGA 2517
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2428 TCTGATTGGTGATGAATTAACAGAAAAAGAAAAGAAAGCCCTGCGCAGAACCATGACTGA 2487
Query 2518 CCTGGCGTCAGTTATTCCCATCGGTATTCTAATGCTTCTTCCTGTTACAGCGGTTGGTCA 2577
| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2488 CTTGGCATCAGTTATTCCCATCGGTATTCTAATGCTTCTTCCGGTTACAGCGGTTGGTCA 2547
Query 2578 CGCTGCCATGCTGGCTGGAATTCAGAGATATGTACC-AGGCCTGATTCCTTCCACATACG 2636
||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 2548 CGCAGCCATGCTGGCTGGAATTCAGAGATATGTACCCAG-CCTGATTCCTTCCACATATG 2606
Query 2637 GGTCCGAAAGGTTGAACCTATTGAGACAGCTTGAGAAAATCAAGGAACTGCAAACAAATG 2696
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 GGTCTGAAAGGTTGAACCTATTGAGACAGCTTGAGAAAATCAAGGAACTGCAAACAAATG 2666
Query 2697 AAACCGAGAGCGAAGAAGGCGTAGAGGAAATAGCATTATGAGTAG-AAGGAAGCAATATA 2755
|||| |||| |||||||||||| ||||| |||||||||||| ||| ||||||||||||||
Sbjct 2667 AAACTGAGACCGAAGAAGGCGTCGAGGAGATAGCATTATGACTAGGAAGGAAGCAATATA 2726
Query 2756 GACTTGTACCTCTATTCACTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCATAGAGAAT 2815
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2727 TACTTGTACCTCTATTCATTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCGTAGAGAAT 2786
Query 2816 CTCGTTCCATGTGTCCGGTACTCCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATC 2875
| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2787 CCCGTTCCATGTGTCAGGTACACCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATC 2846
Query 2876 TTCAGGAGTTCCCGGTTCTCGATACCGCGAAGGATGAGCATCTTTCCTGAACTCGGTCAG 2935
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2847 TTCAGGAGTTCCCGGTTCTCGATACCGTGAAGGATGAGCATCTTTCCTGAACTCGGTCAG 2906
Query 2936 ATATG 2940
|||||
Sbjct 2907 ATATG 2911
> Ahg487429 jgi|Araly1|487429|fgenesh2_kg.6__563__AT5G06220.1
Length=2746
Score = 922 bits (499), Expect = 0.0
Identities = 1045/1301 (80%), Gaps = 67/1301 (5%)
Strand=Plus/Plus
Query 1716 CATCATCAATTGTTAGAGAGTCGAA-CTCATTTGACAAGGCCCTAGAAAGTGTAGATGAG 1774
|||| |||| || | ||||||| || ||||||||||||||| ||||| |||||||||||
Sbjct 1460 CATCCTCAACTGATGGAGAGTC-AAGCTCATTTGACAAGGCTCTAGAGAGTGTAGATGAA 1518
Query 1775 GCCCTCGTTAGACTGGAAAGCCTGCTACAGGAGTTGTATGTATCAAACTCATCGTCTGGA 1834
|| ||||| |||||||||||| |||||||| | ||| ||| ||||| |||| | ||||||
Sbjct 1519 GCTCTCGTGAGACTGGAAAGCTTGCTACAGAAATTGCATGCATCAAGCTCAGCTTCTGGA 1578
Query 1835 AAGGAACAAATAAAAGCCGCGTGCTCTGACCTAGAGAAAATACGGAAGCTTAAGAAAGAG 1894
||||||||||||||||| || |||||||||||||| |||||| ||||||| |||||||||
Sbjct 1579 AAGGAACAAATAAAAGCTGCTTGCTCTGACCTAGAAAAAATAAGGAAGCTCAAGAAAGAG 1638
Query 1895 GCTGAATTTCTGGAGGCAACTTTCAGAGCCAAAGCAGCTTCCTTGCAACAGGGAGGTGAC 1954
||||||||| | |||||| ||||||||||||||||||||||| | ||| |||||||||
Sbjct 1639 GCTGAATTTTTAGAGGCATCTTTCAGAGCCAAAGCAGCTTCCCTCCAAGAGGGAGGTGGT 1698
Query 1955 AAAAATGATTCTCAAGAATCCTAC-GAGGTACAAAAACGGTATTTTAAAGGGAAAGACAC 2013
| | ||| ||||| || | || | |||| ||||| | |||| | ||||| |||||| |
Sbjct 1699 GACAGTGACTCTCAGGAGTACT-CTGAGGAACAAAGCCAGTATCTAAAAGGAAAAGACTC 1757
Query 2014 AAAGAACGCAAAT-AGTTCTG-AGGATCAAGGCA-AAAGTATAAG-TCGTGGATTCTGGG 2069
|||||| | ||| | ||||| | |||||||||| ||| || | ||||||||||||||
Sbjct 1758 AAAGAATTC-AATAAATTCTGTA-GATCAAGGCACAAA-TA-GGGATCGTGGATTCTGGG 1813
Query 2070 GATTCTTTGTACGGC-CTTCAAGGAA-GAAGCTTGATCCTGAGTTATCGGGAGATGAATA 2127
| |||||||| | || || ||| ||| ||||| || || |||| || | |||||||||
Sbjct 1814 GGTTCTTTGTTC-GCACTCCAA-GAAGGAAGCCTGGCCCCGAGTCATTGACAGATGAATA 1871
Query 2128 TATTGGGAAATCCAGTGGAAACT-TACTTAGCATAGACTCGGAA--CCAATTGAGATC-A 2183
| ||| ||||||||| |||| | | ||| | || || || |||| ||||||| |
Sbjct 1872 TTTTGAGAAATCCAG-AGAAAATGTTGATAGTGTGGATTC-CAACCCCAA-TGAGATCTA 1928
Query 2184 GCCGATTCGAAATTCTAAGGAACGAGCTAATAGAACTCGAAAAGCGGGTCAAAAGAAGCA 2243
|| |||||| ||||||||||||| || ||||| || || ||||| ||| || ||||||
Sbjct 1929 -TCGGTTCGAACTTCTAAGGAACGAACTGATAGAGCTGGAGAAGCGTGTCCAAGGAAGCA 1987
Query 2244 CTGATCAGTCAGTAGATGAGGAGGAATTAATCTCTGAGGATAC-ACCTCAATCAAGCAGT 2302
| | | | | || | | || | || |||||| ||| | ||| ||| ||||||
Sbjct 1988 C--A--A---A-T-GA-GTCG-GG-ACGAACCTCTGAAGAT-CTTCCTAAATTAAGCAGC 2034
Query 2303 AGAACGGAAA-GTGTTCAGTTGGTTCAGA-CTCCCAAGAAGGAAAACATGATGGAGAAAA 2360
|| | |||| |||| ||||||||||||| || | ||||| |||| | | || |||||||
Sbjct 2035 AGTA-TGAAAGGTGTGCAGTTGGTTCAGAGCT-CAAAGAAAGAAAGCGTCATTGAGAAAA 2092
Query 2361 CTCTTCA-AAAGC-TAAGAGAAGCCACCACGGACGTGTGGCAAGGTACTCAACTTCTTGC 2418
||||| | || | ||| |||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 2093 CTCTTGACCAA-CTTAA-AGAAACCAGTACGGACGTGTGGCAAGGTACTCAGCTTCTTGC 2150
Query 2419 CATTGATTCAGCAGCTGC-AGTGCAGCTACTTCGGAGGTCTCTGATTGGTGATGAATTAA 2477
|||||||||| ||||| | || |||| |||||||||||| || | || ||||||||||
Sbjct 2151 GTTTGATTCAGCTGCTGCTA-TGGAGCTCCTTCGGAGGTCTGTGGTAGGAGATGAATTAA 2209
Query 2478 CAGGA-AAAGAAAAGAAAGCCCTGCGCAGAACCATGACTGACCTGGCGTCAGTTATTCCC 2536
|| || ||||| ||||||||||| |||||||||||||||||| | || |||||| |||||
Sbjct 2210 CA-GAGAAAGAGAAGAAAGCCCTACGCAGAACCATGACTGACTTAGCATCAGTTGTTCCC 2268
Query 2537 ATCGGTATTCTAATGCTTCTTCCTGTTACAGCGGTTGGTCACGCTGCCATGCTGGCTGGA 2596
|| ||| |||| |||||||||||||| ||||| |||||||| || || ||||| |||| |
Sbjct 2269 ATTGGTGTTCTTATGCTTCTTCCTGTCACAGCAGTTGGTCATGCGGCTATGCTTGCTGCA 2328
Query 2597 ATTCAGAGATATGTACCAGGCCTGATTCCTTCCACATACGG-GTCCGAAAGGTTGAACCT 2655
|||||||||||||| |||||| |||| ||||| || ||||| | ||||||||||||||||
Sbjct 2329 ATTCAGAGATATGTGCCAGGCTTGATACCTTCGACCTACGGAG-CCGAAAGGTTGAACCT 2387
Query 2656 ATTGAGACAGCTTGAGAAAATCAAGGAACTGCAAACAAATGAAACCGAGAG-C-GAAGAA 2713
||||||||||| ||||| ||||| || ||||||||||||||| | |||| | ||||||
Sbjct 2388 GTTGAGACAGCTCGAGAAGGTCAAGCAAATGCAAACAAATGAAA-C-AGAGCCTGAAGAA 2445
Query 2714 GGCGTAGAGGAAATAGCATTATGAGTAGA--AGGAAGCA-ATA-T-AGACTTGTACC-T- 2766
||| | || || | || || |||| |||| | ||| || | | | || | | |||| |
Sbjct 2446 GGCATTGATGATACAGAATCATGACTAGATCAAGAAACATAAATTCAGTC-TATACCTTA 2504
Query 2767 -CTATTCACTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCATAGAGAATCTCGTTCCAT 2825
| ||||||||||| || ||||||| ||| || ||||||||||||||||| ||||||
Sbjct 2505 AGAAATCACTTTGTTCTATAGTTCATTGACAAGAGTTGCGCATAGAGAATCTCATTCCAT 2564
Query 2826 GTGTCCGGTACTCCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATCTTCAGGAGTT 2885
|| || ||||| || |||| ||||||||| || |||||||||||| |||| ||| |||
Sbjct 2565 GTATCTGGTACGCCCGGTAGGCACCAGTGGCTACAGTCTTGAGGAACATCAACAGAAGTG 2624
Query 2886 CCCGGTTCTCGATACCGCGAAGGATGAGCATCTTTCCTGAACTCGGTCAGATATGTAATG 2945
|| | ||||||||||| ||| |||| |||||||||||||||| |||||||||||||||
Sbjct 2625 CCTTGCTCTCGATACCGAGAAATATGACCATCTTTCCTGAACTCTGTCAGATATGTAATG 2684
Query 2946 TTCAGAAACTTAACCTTACTATGTTC-ATATCTCATTTCTT 2985
||||||||||||| |||||||||| | ||||||||||||||
Sbjct 2685 TTCAGAAACTTAAGCTTACTATGT-CGATATCTCATTTCTT 2724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114918269165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5