BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11580.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928873 jgi|Araly1|928873|scaffold_301330.1 1312 0.0
> Ahg928873 jgi|Araly1|928873|scaffold_301330.1
Length=833
Score = 1312 bits (710), Expect = 0.0
Identities = 809/853 (95%), Gaps = 21/853 (2%)
Strand=Plus/Plus
Query 39 ACTCCAAGAAACCaaaaaaaaaGATGTCAGTCAACCATTACCACAACACTCTCTCGTTGC 98
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCCAAGAAA--AAAAAAAAA-ATGTCAGTCAACCATTACCACAACACTCTCTCGTTGC 57
Query 99 ATCATCACCACCAAAACGACGTAGCTATAGCACAACGAGAGTCTTTGTTCGAGAAATCAC 158
|||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 58 ATCAACACCACCAAAACGACGTAGCCATAGCACAAAGAGAGTCTTTGTTCGAGAAATCAC 117
Query 159 TCACACCAAGCGACGTCGGAAAGCTAAACCGCTTAGTCATACCAAAACAACACGCCGAGA 218
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 TCACACCAAGCGACGTCGGAAAACTAAACCGCTTAGTCATACCAAAACAACACGCCGAGA 177
Query 219 AATACTTCCCTCTCaataataataataataatGGCGGCAGCGGA-GATGACGTGGCGACG 277
|||||||||||||| |||||||||||| | || || |||||||||||||||
Sbjct 178 AATACTTCCCTCTC---------AATAATAATGGC-G--GC-GACGATGACGTGGCGACG 224
Query 278 ACGGAGAAAGGGATGCTTCTTAGCTTCGAGGATGAGTCAGGCAAGTGTTGGAAATTCAGA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ACGGAGAAAGGGATGCTTCTTAGCTTCGAGGATGAGTCAGGCAAGTGTTGGAAATTCAGA 284
Query 338 TACTCTTATTGGAACAGTAGCCAAAGCTACGTGTTGACCAAAGGATGGAGCAGGTACGTC 397
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 285 TACTCTTATTGGAACAGTAGCCAGAGCTACGTGTTGACCAAAGGATGGAGCAGGTACGTC 344
Query 398 AAAGACAAACACCTCGACGCAGGCGACGTTGTTTTCTTTCAACGTCACCGTTTTGATCTC 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AAAGACAAACACCTCGACGCAGGCGACGTTGTTTTCTTTCAACGTCACCGTTTTGATCTC 404
Query 458 CATAGACTCTTCATTGGCTGGCGGAGACGCGGTGAAGCTTCTTCCTCTCCCGCTGTCTCC 517
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 405 CATAGACTCTTCATTGGCTGGCGGAGACGCGGTGAAGCTTCTTCCTCTCCCGCCGTCTCC 464
Query 518 GTTGTGTCTCAAGAAGCTCTAGTTAATACGACGGCGTATTGGAGCGGCTTGACTACACCT 577
| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 465 GCCGTGTCTCAAGAAGCTTTAGTTAATACGACGGCGTATTGGAGCGGCTTGACCACACCT 524
Query 578 TATCGTCAAGTACACGCGTCAACTACTTACCCTAATATTCACCAAGAGTATTCACACTAT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TATCGTCAAGTACACGCGTCAACTACTTACCCTAATATTCACCAAGAGTATTCACACTAT 584
Query 638 GGCGCCGTCGTTGATCATGCTCAGTCGATACCACCGGTGGTCGCAGGTAGCTCGAGGACG 697
|||||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 585 GGCGCCGTCGCTGATCAGGCTCAGTCGATACCACCGGTGGTCGCAGGGAGTTCGAGGACG 644
Query 698 GTGAGGCTTTTTGGCGTGAACCTCGAATGTCATGGTGATGCCGTCGAGCCACCACCGCGT 757
|||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 645 GTGAGGCTATTTGGCGTGAACCTTGAATGCCACGGTGATGCCGTCGAGCCACCACCACGT 704
Query 758 CCTGATGTCTATAATGACCAACACATTTACTATTACTCAACTCCTCATCCCATGAATATA 817
|| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CCGGACGGCTATAATGGCCAACACATTTACTATTACTCAACTCCTCATCCCATGAATATA 764
Query 818 TCATTTGCTGGGGAAGCATTGGAGCAGGTAGGAGATGGACGAGGTTGATGACTGACATTC 877
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 765 TCATTTGCTGGGGAAGCATTGGAGCAGGTAGGAGATGGACGAGGTTGATGAC--A--TTC 820
Query 878 AAAAAGAAGTGAC 890
|||||||||||||
Sbjct 821 AAAAAGAAGTGAC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5