BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11590.1
Length=2218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478504 jgi|Araly1|478504|fgenesh2_kg.3__1205__AT3G11590.1 3624 0.0
> Ahg478504 jgi|Araly1|478504|fgenesh2_kg.3__1205__AT3G11590.1
Length=2219
Score = 3624 bits (1962), Expect = 0.0
Identities = 2143/2228 (96%), Gaps = 21/2228 (1%)
Strand=Plus/Plus
Query 3 TCTGATCAAAAAACCTCAAAACACAGCAACCGCCATTTCTTTCCAAATTCCCCCAATTC- 61
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTGATCAAAATACCTCAAAACACAGCAACCGCCATTTCTTTCCAAATTCCCCCAATTCT 60
Query 62 C--CA---TTC-CAACTTTATCTTCTGA-AGTAGAAGAAGAAGCCATAGAAATGCTTTGA 114
| || ||| ||| | | ||| | | | |||||||||||||||||||||||| |
Sbjct 61 CTTCACTTTTCTCAA-TCCAACTT-T-ATCCT-CAAGAAGAAGCCATAGAAATGCTTTAA 116
Query 115 AGTTTCTGTAAAGAGAAAGATCTACAATTGTTTTGAATATGCCGAGGCAGAATCAAAGCG 174
|||||||||||||||| | |||| || |||||||||||||||||| ||||||||||||
Sbjct 117 AGTTTCTGTAAAGAGATCTACCTACGATAGTTTTGAATATGCCGAGGGAGAATCAAAGCG 176
Query 175 TAGAGAATCTACTTCTACTTGGCAAAATCAGGAAACGTGGTTGTTCTTCGCCGACATCGT 234
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 177 TAGAGAATCTACTTCTACTTGGCAAAATCAGGAAACGTGGATGTTCTTCGCCGACATCGT 236
Query 235 CGACTTCTTCGATTCTCCGTGAAGGTTATAGATTCAAAAGAGCGATAGTTGTTGGTAAAA 294
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 237 CGACTTCTTCGATTCTCCGTGAAGGTTATAGATTCAAAAGAGCGATTGTTGTTGGTAAAA 296
Query 295 GAGGAGGATCCACTACTCCTGTACCTACATGGAGACTTATGGGTCGATCTCCTTCTCCAC 354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 GAGGAGGATCCACTACTCCTGTACCTACATGGAGACTTATGGGCCGATCTCCTTCTCCAC 356
Query 355 GAGCTTCCGGTGCTTTACACGCTGCTGCTTCTCCGTCGTCTCACTGCGGGAGCAAAACCG 414
||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 357 GAGCTTCCGGTGCTTTACACGCTGC-G--TCTCCGTCGTCGCACTGCGGGAGCAAAACCG 413
Query 415 GTAAAGTATCAGCTCCTGCTCCTGTTTCAGCTAGGAAGTTAGCTGCGACGCTTTGGGAGA 474
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 414 GTAAAGTATCAGCTCCTGCTCCGGTTTCAGCTAGGAAGTTAGCGGCGACGCTTTGGGAGA 473
Query 475 TGAACGAGATGCCTTCACCTAGAGTTGTGGAGGAGGCTGCGCCAATGATTAGAAAGAGTA 534
||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 474 TGAACGAGATGCCTTCACCTAGAGTGGTGGAGGCGGCGGTGCCAATGATTAGAAAGAGTA 533
Query 535 GAAAGGAGAGAATCGCGCCGCTTCCTCCGCCGAGATCATCGGTTCATTCTGGTTCTCTAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAAAGGAGAGAATCGCGCCGCTTCCTCCGCCGAGATCATCGGTTCATTCTGGTTCTCTAC 593
Query 595 CGCCTCATCTTTCTGATCCGTCGCATAGTCCAGTCTCTGAGAGGATGGAAAGATCAGGGA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CGCCTCATCTTTCTGATCCGTCGCATAGTCCAGTCTCTGAGAGGATGGAAAGATCAGGGA 653
Query 655 CTGGGAGTCGCCAGAGAAGAGCTTCATCAACTGTGCAAAAGCTTAGGCTTGGAGACTGCA 714
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 654 CTGGGAGTCGCCAGAGAAGAGCATCATCAACTGTGCAGAAGCTTAGGCTTGGAGACTGCA 713
Query 715 ATGTGGGGGCTAGGGATCCTATTAACAGTGGCAGCTTCATGGATATTGAGACTCGATCAC 774
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 714 ATGTGGGGGCTAGGGATCCTATTAGCAATGGCAGCTTCATGGATATTGAGACTCGATCAC 773
Query 775 GGGTGGAGACACCGACTGGGTCAACTGTGGGTGTCAAAACACGGTTGAAGGATTGTAGTA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGGTGGAGACACCGACTGGGTCAACTGTGGGTGTCAAAACACGGTTGAAGGATTGTAGTA 833
Query 835 ACGCTCTCACAACATCAAAAGAGCTTCTCAAAATCATTAACAGAATGTGGGGTCAAGACG 894
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 834 ACGCTCTCACAACATCAAAAGAGCTTCTCAAAATCATTAATAGAATGTGGGGTCAAGACG 893
Query 895 ACCGCCCATCTTCTAGCATGTCCCTCGTCTCTGCTTTACATTCTGAGCTCGAAAGAGCTC 954
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATCGCCCATCTTCTAGCATGTCCCTCGTCTCTGCTTTACATTCTGAGCTCGAAAGAGCTC 953
Query 955 GCTTACAGGTCAATCAGTTAATCCACGAACATAAACCGGAAAACAACGACATTAGCTACT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCTTACAGGTCAATCAGTTAATCCACGAACATAAACCGGAAAACAACGACATTAGCTACT 1013
Query 1015 TGATGAAGCGTTTTGCCGAAGAGAAAGCTGTGTGGAAAAGCAACGAGCAAGAAGTTGTTG 1074
|||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 1014 TGATGAAGCGTTTTGCCGAAGAGAAAGCAGCGTGGAAAAGCAACGAGCAAGAAGTCGTTG 1073
Query 1075 AGGCTGCAATCGAATCTGTTGCTGGTGAGCTAGAAGTGGAGAGGAAGCTGAGGAGACGGT 1134
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1074 AGGCTGCAATCGAATCTGTTGCTGGTGAGCTAGAAGTGGAGAGGAAGTTGAGGAGACGGT 1133
Query 1135 TTGAGAGCTTGAACAAGAAATTGGGCAAAGAATTGGCTGAAACAAAATCAGCTCTGATGA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTGAGAGCTTGAACAAGAAATTGGGCAAAGAATTGGCTGAAACAAAATCAGCTCTGATGA 1193
Query 1195 AAGCAGTTAAAGAAATCGAGAACGAGAAGCGAGCGAGAGTGATGGTTGAGAAAGTTTGTG 1254
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1194 AAGCAGTGAAAGAAATCGAGAACGAGAAGCGAGCGAGAGTGATGGTCGAGAAAGTTTGTG 1253
Query 1255 ATGAACTAGCAAGAGACATAAGCGAAGACAAAGCCgaagttgaagaactgaagagagaat 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATGAACTAGCAAGAGACATAAGCGAAGACAAAGCCGAAGTTGAAGAACTGAAGAGAGAAT 1313
Query 1315 cttttaaagtcaaagaagaagtcgaaaaggaaagagagaTGTTGCAGTTAGCAGATGCAT 1374
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTTTTAAAGTCAAAGAAGAAGTGGAAAAGGAAAGAGAGATGTTGCAGTTAGCAGATGCAT 1373
Query 1375 TGCGGGAAGAGAGAGTACAGATGAAACTATCGGAGGCTAAACACCAGCTCGAGGAGAAAA 1434
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1374 TGCGCGAAGAGAGAGTACAGATGAAACTCTCGGAGGCTAAACACCAGCTCGAGGAGAAAA 1433
Query 1435 ACGCAGCTGTTGATAAGCTAAGAAACCAGCTTCAAACTTACCTCAAAGCAAAAAGATGTA 1494
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1434 ACGCAGCTGTTGATAAGCTAAGGAACCAGCTTCAAACTTACCTCAAAGCAAAAAGATGTA 1493
Query 1495 AAGAGAAGACCCGTGAACCACCTCAAACTCAGCTACATAACGAAGAGGCTGGAGATTATT 1554
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1494 AAGAGAAGACCCGTGAACCGCCTCAAACTCAGCTACATAACGAAGAGACTGGAGATTATT 1553
Query 1555 TAAACCATCACATCAGTTTTGGATCATATAACATCGAAGATGGAGAAGTCGAGAATGGAA 1614
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1554 TAAACCATCACATCAGTTTTGGATCATATAACATCGAAGATGGAGAAGTAGAGAATGGAA 1613
Query 1615 ATGAAGAAGG-TTCAGGCGAAAGCGACCTTCATTCCATAGAACTGAACATAGACAACAAG 1673
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 ATGAAG-AGGATTCAGGCGAAAGCGACCTTCATTCCATAGAACTGAACATAGACAACAAG 1672
Query 1674 AGCTATAAATGGCCTTATGGTGAAGAGAACAGAGGAAGAAAATCAACGCCAAGGAAAAGC 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGCTATAAATGGCCTTATGGTGAAGAGAACAGAGGAAGAAAATCAACGCCAAGGAAAAGC 1732
Query 1734 CTTTCTTTACAAAGAAGCATATCGGATTGTGTTGATTGGGTTGTACAGAGCGAGAAGCTT 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CTTTCTTTACAAAGAAGCATATCGGATTGTGTTGATTGGGTTGTACAGAGCGAGAAGCTT 1792
Query 1794 CAAAAAAGTGGAGATGGAGGGTTGGATTGGGGAAGATCTATTGACGTTGAGCCTAAAGGG 1853
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 1793 CAAAAAAGTGGAGATGGAGGATTGGATTGGGGAAGATCAATTGAGGTTGAGCCAAAAGGT 1852
Query 1854 TATATAGATGAAACACAAGCTTATAAACCAAACAAGGCTTCTTCAAAAGATCACCATATC 1913
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1853 TATTTAGATGAAACACAAGCTTATAAACCAAACAAGGCTTCTTCAAAAGATCACCATCTC 1912
Query 1914 CTCTCGGGTTCGAGACTAAGTAACTTCCGCGGTGGATCTGTTTCAAAGTCGCGGTTATCG 1973
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1913 GTCTCGGGTTCGAGACTAAGTAACTTCCGCGGTGGATCCGTGTCAAAGTCGCGGTTATCT 1972
Query 1974 GATGCTTCGAAAGGCGAGAACCAGAATGCCAGAAAATCAAGATGGTAATAT-GATCAAGA 2032
||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 1973 GATGCCTCGAAAGGCGAAAACCAGAATGCTAGAAAATCAAGATGGTAATATTGATCCGGA 2032
Query 2033 AATTTTATTCACATTTT-CAGCGCAGAGATAACAGAATCTAAAGAC-TTTACATCTACAT 2090
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2033 AATTTTATTCACATTTTTCAGCGCAGAGATAACAGAATCTAAAGACATTTACATCTACAT 2092
Query 2091 TTTTTCTCTGTTCGCTCGTTTTGTCAAGAGTGATTCTCTCATCTGTAAGTGACATAAAAC 2150
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 TTTT-CTCTGTTCGCTCGTTTTGTCAAGAGTGATTCTCTCATCTGTAAGTGACATAAAAC 2151
Query 2151 ATGAATTTGAACTGGTAATGATCCAAACATGTAAGAGCATGAATTTACACGAAATCGTCT 2210
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 2152 ATGAATTTGAACTGGTAATGATCCAAACATGTAAGAGCAAGAATTTACACGAAATTATCT 2211
Query 2211 TTTGATTT 2218
|| |||||
Sbjct 2212 TTCGATTT 2219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83493817040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5