BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11591.1

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928875 jgi|Araly1|928875|scaffold_301332.1                        350    6e-96
  Ahg478504 jgi|Araly1|478504|fgenesh2_kg.3__1205__AT3G11590.1         309    1e-83


> Ahg928875 jgi|Araly1|928875|scaffold_301332.1
Length=233

 Score =  350 bits (189),  Expect = 6e-96
 Identities = 214/226 (95%), Gaps = 1/226 (0%)
 Strand=Plus/Plus

Query  1    GCGGTAAACGATAA-GATGGTGTTTTTTATGTCGTATCCGCCGACACGGCGGCAGTTAGT  59
            |||||||| || || |||||||||||||||||||||||||||||||||||||||||||  
Sbjct  5    GCGGTAAAAGAGAAGGATGGTGTTTTTTATGTCGTATCCGCCGACACGGCGGCAGTTAAC  64

Query  60   AGTGTCGGTGGGTTTTTTCGCGGCGGGCGTTTCTCTCTTCGTCGCCGGAGCGTATCTCTC  119
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   GGTGTCGGTGGGTTTTTTCGCGGCGGGCGTTTCTCTCTTCGTCGCCGGAGCGTATCTCTC  124

Query  120  ACTCGCCAACATCTCACCGCAACAAGCTCGCGTCAAAGCTCGTAATGATTTCGTCAAGGA  179
            ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  125  ACTCGCCAACATCGCACCTCAACAAGCTCGCGTCAAAGCTCGGAATGATTTCGTCAAGGA  184

Query  180  TCGAATCAGGAAATGGCTCGACGATTAGTGTCtttttttCGATCTT  225
            ||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct  185  TCGAATCAGGAAATGGCTCGATGATTAGTGTTTTTTTTTCGGTCTT  230


> Ahg478504 jgi|Araly1|478504|fgenesh2_kg.3__1205__AT3G11590.1
Length=2219

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 183/190 (96%), Gaps = 3/190 (2%)
 Strand=Plus/Minus

Query  253   AAATCAAAAGACGATTTCGTGTAAATTCATGCTCTTACATGTTTGGATCATTACCAGTTC  312
             ||||| |||||  ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  2219  AAATCGAAAGATAATTTCGTGTAAATTCTTGCTCTTACATGTTTGGATCATTACCAGTTC  2160

Query  313   AAATTCATGTTTTATGTCACTTACAGATGAGAGAATCACTCTTGACAAAACGAGCGAACA  372
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2159  AAATTCATGTTTTATGTCACTTACAGATGAGAGAATCACTCTTGACAAAACGAGCGAACA  2100

Query  373   GAGAAAAAATGTAGATGTAAA-GTCTTTAGATTCTGTTATCTCTGCGCTGAAAA-TGTGA  430
             |||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  2099  GAGAAAAA-TGTAGATGTAAATGTCTTTAGATTCTGTTATCTCTGCGCTGAAAAATGTGA  2041

Query  431   ATAAAATTTC  440
             ||||||||||
Sbjct  2040  ATAAAATTTC  2031



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15987191791


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5