BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11600.1 Length=751 Score E Sequences producing significant alignments: (Bits) Value Ahg478506 jgi|Araly1|478506|fgenesh2_kg.3__1207__AT3G11600.1 1094 0.0 Ahg487435 jgi|Araly1|487435|fgenesh2_kg.6__569__AT5G06270.1 156 3e-37 > Ahg478506 jgi|Araly1|478506|fgenesh2_kg.3__1207__AT3G11600.1 Length=721 Score = 1094 bits (592), Expect = 0.0 Identities = 695/741 (94%), Gaps = 22/741 (3%) Strand=Plus/Plus Query 2 TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC 60 Query 62 CAAAACCTCTTTCTCAATCCCACATagagagaaagagagagagagagaTGAGTCGGAGGA 121 |||||||||||||||||| |||||| |||| ||| | ||||||||||||| ||||||| Sbjct 61 CAAAACCTCTTTCTCAAT-CCACAT--AGAG--AGA-A-AGAGAGAGATGAGCCGGAGGA 113 Query 122 ACAAGAACGGCCCTAAGCTCGAGCTGAGGCTGAATCTTTCGCCGCCTCCTTCTCAAGCCA 181 ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 114 ACAAGAACGGCTCTAAGCTCGAGCTGAGGCTAAACCTTTCGCCGCCTCCTTCTCAAGCCA 173 Query 182 GCCAGATGAGTCTTGTTCGATCACCAAACCGATCCAACACGACTTCACCAAGCTCATGCG 241 |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| Sbjct 174 GCCAGATGAGTCTTGTTCGATCTCCAAACCGATCCAACACGACTTCACCGACCTCATGCG 233 Query 242 TTTCATCTGAAACTAACCAGGAGGAGAACGAGACAATAACCTCAATGGTTCTTGTGGGTT 301 |||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 234 TTTCTTCTGAAACGAACCAGGAGGAGAACGAGGCAATAACCTCAATGGTTCTTGTCGGTT 293 Query 302 GCCCTCGTTGCCTTATGTACGTTATGCTTTCTGATGATGACCCTAAATGTCCTAAATGCA 361 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 294 GCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGATGACCCTAAATGTCCTAAATGCA 353 Query 362 AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG 413 Query 422 CTGCCAATACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC 481 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 CTGCCAACACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC 473 Query 482 GCGttttttttGTTGTTGTATGTAATCGAGGGATCTCAAAAGTCAAACCGAAATCTAAAC 541 || |||||||| | || ||||||||||||||||| | |||||||||||||||| Sbjct 474 GCATTTTTTTT-T-GT---ATGTAATCGAGGGATCT------T-AAACCGAAATCTAAAC 521 Query 542 TAATCCAACCGTA-TTTTTCTGGTTTCTCCTTTTATTTATCTCTTTAGTTGTTTTGTCTT 600 ||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||| Sbjct 522 TAATCCAACCGTACTTTTT-TGGTTTCTCCTTTGATTTTTCTCTTTAGTTGTTTTGTCTT 580 Query 601 TAGAGTAGTGCTAATCACGCTCCACTTTTAGACCAGACTCGAAGTGTAGCGCGACTAGCA 660 ||||||||||||||||||||||||||||||||| | ||| |||||| ||||| ||||||| Sbjct 581 TAGAGTAGTGCTAATCACGCTCCACTTTTAGACTAAACTTGAAGTGGAGCGCCACTAGCA 640 Query 661 CTAACTTTGCTTAAAATGGAAGAATGATTATTTTTGTTATAACTGGTGATGCTTAGTATG 720 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 641 CTAACTTTGCTTAAAATGGAAGAATGATTATTTTTTTTATAACTGGCGATGCTTAGTATG 700 Query 721 ACGAAACATGTGTTGTTGttt 741 | |||||||||||||||||| Sbjct 701 AT-AAACATGTGTTGTTGTTT 720 > Ahg487435 jgi|Araly1|487435|fgenesh2_kg.6__569__AT5G06270.1 Length=965 Score = 156 bits (84), Expect = 3e-37 Identities = 113/127 (89%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 272 AGACAATAACCTCAATGGTTCTTGTGGGTTGCCCTCGTTGCCTTATGTACGTTATGCTTT 331 ||| || |||||| ||||||||||| || || |||||||| || |||||||||||||| | Sbjct 412 AGA-AACAACCTCGATGGTTCTTGTCGGATGTCCTCGTTGTCTCATGTACGTTATGCTCT 470 Query 332 CTGATGATGACCCTAAATGTCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCAAG 391 | || || ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 471 CAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCATG 530 Query 392 AAAACGC 398 ||||||| Sbjct 531 AAAACGC 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27677237742 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5