BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11600.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478506 jgi|Araly1|478506|fgenesh2_kg.3__1207__AT3G11600.1 1094 0.0
Ahg487435 jgi|Araly1|487435|fgenesh2_kg.6__569__AT5G06270.1 156 3e-37
> Ahg478506 jgi|Araly1|478506|fgenesh2_kg.3__1207__AT3G11600.1
Length=721
Score = 1094 bits (592), Expect = 0.0
Identities = 695/741 (94%), Gaps = 22/741 (3%)
Strand=Plus/Plus
Query 2 TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC 60
Query 62 CAAAACCTCTTTCTCAATCCCACATagagagaaagagagagagagagaTGAGTCGGAGGA 121
|||||||||||||||||| |||||| |||| ||| | ||||||||||||| |||||||
Sbjct 61 CAAAACCTCTTTCTCAAT-CCACAT--AGAG--AGA-A-AGAGAGAGATGAGCCGGAGGA 113
Query 122 ACAAGAACGGCCCTAAGCTCGAGCTGAGGCTGAATCTTTCGCCGCCTCCTTCTCAAGCCA 181
||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 114 ACAAGAACGGCTCTAAGCTCGAGCTGAGGCTAAACCTTTCGCCGCCTCCTTCTCAAGCCA 173
Query 182 GCCAGATGAGTCTTGTTCGATCACCAAACCGATCCAACACGACTTCACCAAGCTCATGCG 241
|||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 174 GCCAGATGAGTCTTGTTCGATCTCCAAACCGATCCAACACGACTTCACCGACCTCATGCG 233
Query 242 TTTCATCTGAAACTAACCAGGAGGAGAACGAGACAATAACCTCAATGGTTCTTGTGGGTT 301
|||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 234 TTTCTTCTGAAACGAACCAGGAGGAGAACGAGGCAATAACCTCAATGGTTCTTGTCGGTT 293
Query 302 GCCCTCGTTGCCTTATGTACGTTATGCTTTCTGATGATGACCCTAAATGTCCTAAATGCA 361
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 294 GCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGATGACCCTAAATGTCCTAAATGCA 353
Query 362 AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG 413
Query 422 CTGCCAATACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTGCCAACACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC 473
Query 482 GCGttttttttGTTGTTGTATGTAATCGAGGGATCTCAAAAGTCAAACCGAAATCTAAAC 541
|| |||||||| | || ||||||||||||||||| | ||||||||||||||||
Sbjct 474 GCATTTTTTTT-T-GT---ATGTAATCGAGGGATCT------T-AAACCGAAATCTAAAC 521
Query 542 TAATCCAACCGTA-TTTTTCTGGTTTCTCCTTTTATTTATCTCTTTAGTTGTTTTGTCTT 600
||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 522 TAATCCAACCGTACTTTTT-TGGTTTCTCCTTTGATTTTTCTCTTTAGTTGTTTTGTCTT 580
Query 601 TAGAGTAGTGCTAATCACGCTCCACTTTTAGACCAGACTCGAAGTGTAGCGCGACTAGCA 660
||||||||||||||||||||||||||||||||| | ||| |||||| ||||| |||||||
Sbjct 581 TAGAGTAGTGCTAATCACGCTCCACTTTTAGACTAAACTTGAAGTGGAGCGCCACTAGCA 640
Query 661 CTAACTTTGCTTAAAATGGAAGAATGATTATTTTTGTTATAACTGGTGATGCTTAGTATG 720
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 641 CTAACTTTGCTTAAAATGGAAGAATGATTATTTTTTTTATAACTGGCGATGCTTAGTATG 700
Query 721 ACGAAACATGTGTTGTTGttt 741
| ||||||||||||||||||
Sbjct 701 AT-AAACATGTGTTGTTGTTT 720
> Ahg487435 jgi|Araly1|487435|fgenesh2_kg.6__569__AT5G06270.1
Length=965
Score = 156 bits (84), Expect = 3e-37
Identities = 113/127 (89%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 272 AGACAATAACCTCAATGGTTCTTGTGGGTTGCCCTCGTTGCCTTATGTACGTTATGCTTT 331
||| || |||||| ||||||||||| || || |||||||| || |||||||||||||| |
Sbjct 412 AGA-AACAACCTCGATGGTTCTTGTCGGATGTCCTCGTTGTCTCATGTACGTTATGCTCT 470
Query 332 CTGATGATGACCCTAAATGTCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCAAG 391
| || || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 471 CAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCATG 530
Query 392 AAAACGC 398
|||||||
Sbjct 531 AAAACGC 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5