BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11620.2
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928877 jgi|Araly1|928877|scaffold_301334.1 1546 0.0
> Ahg928877 jgi|Araly1|928877|scaffold_301334.1
Length=982
Score = 1546 bits (837), Expect = 0.0
Identities = 934/982 (95%), Gaps = 2/982 (0%)
Strand=Plus/Plus
Query 144 GTTGAATCGCGTGACCGGAGACATGGAGACTCAAAACAAATTGATGAATGAAACTAAAAG 203
||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||
Sbjct 2 GTTGAATCGCGTGACCGCAAATATGGAGACTCAAAACAAATTGATGAATGAAGCTAAAAG 61
Query 204 ACATGTTAAATCCAGATTGTGCAGAGTTTCTGGTTCGATGACGGAGATGATGGAAATTCA 263
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 62 ACATGTTGATTCCAGATTGTGCAGAGTTTCTGGCTCGATGACGGAGATAATGGAAATTCA 121
Query 264 AGCTGAGAATCCCACATTCCATGTATTGTTTATTCCGGGAAATCCAGGAGTTGTGTCATT 323
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGCTGAGGATCCCACATTCTATGTATTGTTTATTCCGGGAAATCCAGGAGTTGTGTCATT 181
Query 324 TTACAAGGACTTTTTGGAATCTTTATACGAGTTTCTTGGTGGAAATGCTTCTGTAATTGC 383
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 182 TTACAAGGAGTTTTTGGAATCTTTATACGAGTTTCTTGATGGAAATGCTTCTGTAATTGC 241
Query 384 TATTGGGCAAATATCTCACACGAGCAAGGACTGGGAGTCTGGGAGGCTATTTTCATTTCA 443
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 242 TATTGGGCAAATATCTCACACGAGCAAGGACTGGGAATCTGGGAGGCTATTTTCGTTTCA 301
Query 444 AGAACAAATTGATCATAAGATTGATTTTATCAGACAGGAGTTGGAGAGTGTGAAAGTTCC 503
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 302 AGAACAAATTGATCATAAGATTGATTTTATCAGACAGGAGCTGGAGAGCGTGAAAGTTCC 361
Query 504 AATAATATTGGTTGGGCATTCTATTGGGTCTTATATATCCCTTGAGTTATTGAAGAAATT 563
||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||
Sbjct 362 AATAATATTGGTTGGGCATTCTATTGGATCTTATATATCCCTTGAAATATTGAGGAAGTT 421
Query 564 CTCGGACAAGGTGGTATATTGCATTGGCCTATATCCATTTTTGACTTTGAACCAACAATC 623
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 422 CTCGGAGAAGGTGGTATATTGCATTGGTCTGTATCCATTTTTGACTTTGAACCAACAATC 481
Query 624 AACAAAGCAATCATTAATTGGCAAACTTGCAGCGTCTTCTGTTCTGTCGGCTACAGCAAG 683
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 482 GACAAAGCAATCATTAATTGGGAAACTTGCAGCGTCTTCTGTTCTGTCGGCTACAGCAAG 541
Query 684 TTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCTAA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 542 TTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCCAA 601
Query 744 ATCCATTGGAGCTTCATGGTCTGATACTGCTGTTCAAGCTACCTGCACTCACTTGAGGCA 803
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 602 CTCCATTGGAGCTTCATGGTCTGATACTGCTGTTCAAGCTACTTGCACTCACTTGAGACA 661
Query 804 GTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGCTTGCAGC 863
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 662 GTATCACACCATGCGCAATGTCCTCTTCATGGCAAAGTCAGAGTTTAGAGAGCTCGCAGC 721
Query 864 AGAGCCAGATTGGGATTTCATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCAT 923
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGAGCCAGATTGGGATTTTATGAGAGAAAACCAGAGCAAGCTTGCATTTTTATTTGGCAT 781
Query 924 TGATGATCATTGGGGTCCACTGCAACTCTTTGAAGAGATTTCAAAGCAAGCTCC-GCATA 982
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | ||
Sbjct 782 AGATGATCATTGGGGTCCACTGCAACTCTTTGAAAAGATTTCGAAGCAGGCTCCAGG-TA 840
Query 983 CTTCCTTATCTATCGAGAGGGAAGGTCACACGCACGGATTCTGCTGCACGGTGGCTGGCT 1042
| ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 CATCCTTGGCCATCGAGAGGGAAGGTCACATGCACGGATTCTGCTGCACGGTGGCTGGCT 900
Query 1043 CGGCATGGGTTGCGCAGCACGTAGCCACTCTAATCAAGAACCGGTTTTCACAGCTCCAGT 1102
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 CAGCATGGGTTGCGCAGCACGTAGCCACTCTGATCAAGAACCGGTTTTCACAGCTCCAGT 960
Query 1103 AAAGTACATTCCCCTGTCTCTT 1124
||||||||||||||| ||||||
Sbjct 961 AAAGTACATTCCCCTTTCTCTT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5